Wall clock time and date at job start Mon Mar 30 2020 07:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00073 * 2 1 4 4 H 1.48502 * 109.46913 * 269.99638 * 3 2 1 5 5 H 1.48501 * 109.47034 * 29.99244 * 3 2 1 6 6 H 1.48500 * 109.47318 * 149.99522 * 3 2 1 7 7 C 1.37874 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00085 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00221 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47376 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47273 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47251 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00525 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47267 * 180.02562 * 13 12 11 15 15 H 1.08997 * 109.93567 * 305.98389 * 14 13 12 16 16 C 1.54538 * 109.84481 * 184.99720 * 14 13 12 17 17 C 1.56087 * 101.98945 * 218.63462 * 16 14 13 18 18 H 1.08998 * 112.96964 * 155.29699 * 17 16 14 19 19 C 1.53004 * 106.56613 * 280.18560 * 17 16 14 20 20 C 1.52682 * 110.66810 * 162.52248 * 19 17 16 21 21 C 1.53240 * 108.70215 * 298.07854 * 20 19 17 22 22 C 1.52876 * 108.44516 * 63.11359 * 21 20 19 23 23 C 1.51197 * 111.20909 * 300.76615 * 22 21 20 24 24 H 1.09001 * 108.43544 * 173.69403 * 23 22 21 25 25 O 1.42700 * 113.23099 * 293.19446 * 23 22 21 26 26 H 0.97001 * 119.99780 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47311 * 60.00350 * 9 7 2 28 28 H 1.09009 * 109.47263 * 300.00199 * 9 7 2 29 29 H 1.09003 * 109.47174 * 59.99926 * 10 9 7 30 30 H 1.08999 * 109.46676 * 300.00209 * 10 9 7 31 31 H 1.09003 * 109.46871 * 59.99998 * 11 10 9 32 32 H 1.08995 * 109.47055 * 300.00276 * 11 10 9 33 33 H 1.00908 * 111.00188 * 303.95970 * 12 11 10 34 34 H 1.08996 * 109.47035 * 59.99780 * 13 12 11 35 35 H 1.09001 * 109.46454 * 300.00259 * 13 12 11 36 36 H 1.08997 * 110.92813 * 100.46387 * 16 14 13 37 37 H 1.08996 * 110.92722 * 336.80879 * 16 14 13 38 38 H 1.08996 * 109.23803 * 282.83186 * 19 17 16 39 39 H 1.08998 * 109.23422 * 42.21279 * 19 17 16 40 40 H 1.09004 * 109.59945 * 178.31546 * 20 19 17 41 41 H 1.09005 * 109.60124 * 57.84091 * 20 19 17 42 42 H 1.09007 * 109.63526 * 303.43218 * 21 20 19 43 43 H 1.08997 * 109.82025 * 182.90904 * 21 20 19 44 44 H 1.09004 * 109.13055 * 180.31775 * 22 21 20 45 45 H 1.08995 * 109.07878 * 61.18001 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 7 6.0412 -4.0214 0.0014 13 6 7.5097 -4.0607 0.0020 14 6 7.9810 -5.5163 0.0019 15 1 7.5223 -6.0555 0.8307 16 6 9.5202 -5.5694 0.1291 17 6 9.8843 -6.7463 -0.8294 18 1 10.9024 -6.6826 -1.2135 19 6 9.6122 -8.0385 -0.0566 20 6 9.5175 -9.2270 -1.0103 21 6 8.3407 -8.9985 -1.9649 22 6 8.6311 -7.7520 -2.8009 23 6 8.8200 -6.5359 -1.9225 24 1 9.1339 -5.7023 -2.5507 25 8 7.6290 -6.1428 -1.2418 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6803 -0.8889 29 1 3.6585 -3.1502 -0.8893 30 1 3.6578 -3.1505 0.8907 31 1 5.9149 -2.1227 0.8910 32 1 5.9148 -2.1226 -0.8890 33 1 5.6657 -4.5375 0.7830 34 1 7.8863 -3.5566 0.8920 35 1 7.8869 -3.5569 -0.8880 36 1 9.8187 -5.7946 1.1529 37 1 9.9713 -4.6370 -0.2103 38 1 10.4221 -8.2104 0.6523 39 1 8.6736 -7.9398 0.4887 40 1 9.3534 -10.1413 -0.4400 41 1 10.4414 -9.3111 -1.5826 42 1 7.4265 -8.8494 -1.3902 43 1 8.2243 -9.8609 -2.6211 44 1 7.7974 -7.5756 -3.4807 45 1 9.5378 -7.9166 -3.3829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379022962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:05 Heat of formation + Delta-G solvation = -77.890725 kcal Electronic energy + Delta-G solvation = -20502.931287 eV Core-core repulsion = 17518.683106 eV Total energy + Delta-G solvation = -2984.248180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74667 -36.88668 -35.65947 -33.58117 -32.90684 -31.54183 -30.23549 -29.28755 -26.69019 -24.45507 -23.01809 -22.13385 -21.65342 -21.16711 -19.95019 -19.71114 -16.75153 -16.67446 -16.13192 -15.49605 -15.28167 -14.90427 -14.46995 -14.40739 -13.87577 -13.75824 -13.53539 -13.05007 -12.83813 -12.59747 -12.20496 -12.17252 -12.10722 -11.79700 -11.71337 -11.63812 -11.49160 -11.03176 -10.87993 -10.86689 -10.74481 -10.43747 -10.27471 -9.89848 -9.66678 -9.55816 -9.36701 -9.11301 -8.48899 -8.11220 -5.99193 -3.96574 3.34049 3.40754 3.44827 3.61782 4.10880 4.29778 4.32398 4.49561 4.56214 4.77555 4.81931 4.86533 4.97224 5.03433 5.15113 5.18844 5.27027 5.30591 5.34706 5.40888 5.47415 5.49396 5.57904 5.62162 5.74116 5.76129 5.83771 5.85436 5.92783 5.97046 5.99911 6.04127 6.19388 6.23905 6.61744 6.63919 6.98401 7.05299 7.29988 7.41663 7.51144 7.66459 7.85852 8.60836 9.06847 9.63570 11.14495 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040830 B = 0.002871 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.602467 B = 9751.280143 C =10043.912794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.057 3.943 12 N -0.681 5.681 13 C 0.049 3.951 14 C 0.086 3.914 15 H 0.077 0.923 16 C -0.151 4.151 17 C -0.117 4.117 18 H 0.095 0.905 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.114 4.114 23 C 0.084 3.916 24 H 0.052 0.948 25 O -0.346 6.346 26 H 0.262 0.738 27 H 0.013 0.987 28 H 0.011 0.989 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.021 0.979 32 H 0.065 0.935 33 H 0.337 0.663 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.811 -16.722 -0.972 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.071 4.071 12 N -0.312 5.312 13 C -0.081 4.081 14 C 0.028 3.972 15 H 0.094 0.906 16 C -0.189 4.189 17 C -0.136 4.136 18 H 0.113 0.887 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.151 4.151 23 C 0.026 3.974 24 H 0.070 0.930 25 O -0.265 6.265 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.029 0.971 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.155 0.845 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 24.385 -16.682 -1.730 29.595 hybrid contribution 0.765 1.394 1.007 1.882 sum 25.150 -15.288 -0.723 29.441 Atomic orbital electron populations 1.69922 1.06290 1.26779 1.51482 1.25046 0.94739 0.99164 0.94696 0.86761 0.80292 0.83632 0.78473 1.20305 1.21459 1.19114 1.21169 0.89566 0.94471 1.50356 0.91002 1.19546 0.97131 0.92369 0.96034 1.21436 0.91114 0.99539 1.01613 1.22146 0.97686 0.87685 0.99595 1.60425 1.06099 1.14784 1.49882 1.22337 0.89754 0.95363 1.00600 1.22779 0.93453 0.93228 0.87719 0.90558 1.23432 0.95550 0.99133 1.00807 1.22870 0.99693 0.95227 0.95803 0.88718 1.21508 1.02053 0.93633 0.97762 1.21525 0.98670 0.97728 0.97756 1.21530 0.98848 0.97105 0.98138 1.21185 1.02396 0.93751 0.97776 1.22055 0.85361 0.96435 0.93536 0.93038 1.88548 1.27935 1.77619 1.32431 0.92814 0.96912 0.97090 0.91894 0.93066 0.96058 0.91631 0.84528 0.94798 0.90842 0.90055 0.90517 0.92101 0.91391 0.91964 0.92104 0.91100 0.91992 0.91005 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.66 13.96 55.43 0.77 -27.89 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.30 27.47 -169.99 -4.67 17.64 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.52 -15.31 9.66 -34.44 -0.33 -15.65 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.07 5.41 -26.73 -0.14 -2.22 16 11 C 0.06 0.99 5.69 -3.83 -0.02 0.97 16 12 N -0.68 -10.40 6.48 -113.79 -0.74 -11.13 16 13 C 0.05 0.61 5.23 -3.83 -0.02 0.59 16 14 C 0.09 0.93 2.94 -25.93 -0.08 0.86 16 15 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 16 C -0.15 -1.22 5.90 -24.27 -0.14 -1.36 16 17 C -0.12 -0.91 3.73 -88.44 -0.33 -1.24 16 18 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 19 C -0.11 -0.83 4.91 -26.89 -0.13 -0.96 16 20 C -0.12 -0.83 5.92 -26.77 -0.16 -0.99 16 21 C -0.12 -0.97 5.93 -26.67 -0.16 -1.13 16 22 C -0.11 -0.98 5.63 -27.70 -0.16 -1.14 16 23 C 0.08 0.83 3.06 -27.11 -0.08 0.75 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 O -0.35 -4.45 10.68 -35.23 -0.38 -4.83 16 26 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 27 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 28 H 0.01 0.27 7.57 -51.92 -0.39 -0.13 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.34 4.82 8.73 -39.29 -0.34 4.48 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.56 7.96 -51.93 -0.41 0.15 16 37 H 0.08 0.59 7.86 -51.93 -0.41 0.19 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.59 6.97 -51.93 -0.36 0.22 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -32.03 345.43 -10.40 -42.43 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -8.63 Total: -1.30 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -1.97 Total: -20.11 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.04 Total: -39.02 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.38 Total: -4.83 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.03 -10.40 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379022962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.465 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds