Wall clock time and date at job start Mon Mar 30 2020 07:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00073 * 2 1 4 4 H 1.48502 * 109.46913 * 269.99638 * 3 2 1 5 5 H 1.48501 * 109.47034 * 29.99244 * 3 2 1 6 6 H 1.48500 * 109.47318 * 149.99522 * 3 2 1 7 7 C 1.37874 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00085 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00221 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47376 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47273 * 179.97438 * 10 9 7 12 12 N 1.46894 * 109.47251 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00525 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47267 * 180.02562 * 13 12 11 15 15 H 1.08997 * 109.93567 * 305.98389 * 14 13 12 16 16 C 1.54538 * 109.84481 * 184.99720 * 14 13 12 17 17 C 1.56087 * 101.98945 * 218.63462 * 16 14 13 18 18 H 1.08998 * 112.96964 * 155.29699 * 17 16 14 19 19 C 1.53004 * 106.56613 * 280.18560 * 17 16 14 20 20 C 1.52682 * 110.66810 * 162.52248 * 19 17 16 21 21 C 1.53240 * 108.70215 * 298.07854 * 20 19 17 22 22 C 1.52876 * 108.44516 * 63.11359 * 21 20 19 23 23 C 1.51197 * 111.20909 * 300.76615 * 22 21 20 24 24 H 1.09001 * 108.43544 * 173.69403 * 23 22 21 25 25 O 1.42700 * 113.23099 * 293.19446 * 23 22 21 26 26 H 0.97001 * 119.99780 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47311 * 60.00350 * 9 7 2 28 28 H 1.09009 * 109.47263 * 300.00199 * 9 7 2 29 29 H 1.09003 * 109.47174 * 59.99926 * 10 9 7 30 30 H 1.08999 * 109.46676 * 300.00209 * 10 9 7 31 31 H 1.09003 * 109.46871 * 59.99998 * 11 10 9 32 32 H 1.08995 * 109.47055 * 300.00276 * 11 10 9 33 33 H 1.00908 * 111.00188 * 303.95970 * 12 11 10 34 34 H 1.08996 * 109.47035 * 59.99780 * 13 12 11 35 35 H 1.09001 * 109.46454 * 300.00259 * 13 12 11 36 36 H 1.08997 * 110.92813 * 100.46387 * 16 14 13 37 37 H 1.08996 * 110.92722 * 336.80879 * 16 14 13 38 38 H 1.08996 * 109.23803 * 282.83186 * 19 17 16 39 39 H 1.08998 * 109.23422 * 42.21279 * 19 17 16 40 40 H 1.09004 * 109.59945 * 178.31546 * 20 19 17 41 41 H 1.09005 * 109.60124 * 57.84091 * 20 19 17 42 42 H 1.09007 * 109.63526 * 303.43218 * 21 20 19 43 43 H 1.08997 * 109.82025 * 182.90904 * 21 20 19 44 44 H 1.09004 * 109.13055 * 180.31775 * 22 21 20 45 45 H 1.08995 * 109.07878 * 61.18001 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5515 -2.6365 0.0009 12 7 6.0412 -4.0214 0.0014 13 6 7.5097 -4.0607 0.0020 14 6 7.9810 -5.5163 0.0019 15 1 7.5223 -6.0555 0.8307 16 6 9.5202 -5.5694 0.1291 17 6 9.8843 -6.7463 -0.8294 18 1 10.9024 -6.6826 -1.2135 19 6 9.6122 -8.0385 -0.0566 20 6 9.5175 -9.2270 -1.0103 21 6 8.3407 -8.9985 -1.9649 22 6 8.6311 -7.7520 -2.8009 23 6 8.8200 -6.5359 -1.9225 24 1 9.1339 -5.7023 -2.5507 25 8 7.6290 -6.1428 -1.2418 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6803 -0.8889 29 1 3.6585 -3.1502 -0.8893 30 1 3.6578 -3.1505 0.8907 31 1 5.9149 -2.1227 0.8910 32 1 5.9148 -2.1226 -0.8890 33 1 5.6657 -4.5375 0.7830 34 1 7.8863 -3.5566 0.8920 35 1 7.8869 -3.5569 -0.8880 36 1 9.8187 -5.7946 1.1529 37 1 9.9713 -4.6370 -0.2103 38 1 10.4221 -8.2104 0.6523 39 1 8.6736 -7.9398 0.4887 40 1 9.3534 -10.1413 -0.4400 41 1 10.4414 -9.3111 -1.5826 42 1 7.4265 -8.8494 -1.3902 43 1 8.2243 -9.8609 -2.6211 44 1 7.7974 -7.5756 -3.4807 45 1 9.5378 -7.9166 -3.3829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379022962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:04 Heat of formation + Delta-G solvation = -98.472018 kcal Electronic energy + Delta-G solvation = -20503.823759 eV Core-core repulsion = 17518.683106 eV Total energy + Delta-G solvation = -2985.140652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47773 -37.99987 -36.68468 -35.35477 -33.90285 -33.22726 -30.94701 -30.42036 -28.21012 -25.63978 -23.70385 -23.62921 -22.50612 -22.12972 -21.55923 -20.38904 -18.91724 -17.53127 -17.11347 -16.51438 -16.34542 -16.02617 -15.94128 -15.22374 -15.12811 -14.99637 -14.72924 -14.37586 -13.95776 -13.78239 -13.53309 -13.22979 -12.87132 -12.82793 -12.78301 -12.54272 -12.53120 -12.47658 -12.34356 -11.88570 -11.77983 -11.51703 -11.47856 -11.42064 -11.29727 -11.01348 -10.89822 -10.77443 -10.23446 -9.29108 -8.30258 -6.34958 1.35250 1.37434 1.49796 2.35941 2.85070 3.04678 3.25727 3.46698 3.70019 3.82575 4.03526 4.11891 4.19147 4.21963 4.24073 4.31139 4.36987 4.47912 4.53352 4.56442 4.65092 4.66129 4.66842 4.76524 4.84295 4.88700 4.94066 4.96168 5.01845 5.08321 5.11079 5.22739 5.24783 5.31485 5.36729 5.39235 5.49267 5.56948 5.59404 5.65132 6.07378 6.27300 6.31230 6.51082 6.73229 7.29567 8.86970 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040830 B = 0.002871 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.602467 B = 9751.280143 C =10043.912794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.536 4.536 8 H 0.028 0.972 9 C -0.009 4.009 10 C -0.091 4.091 11 C 0.072 3.928 12 N -0.695 5.695 13 C 0.051 3.949 14 C 0.084 3.916 15 H 0.075 0.925 16 C -0.144 4.144 17 C -0.109 4.109 18 H 0.115 0.885 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.114 4.114 23 C 0.075 3.925 24 H 0.045 0.955 25 O -0.379 6.379 26 H 0.267 0.733 27 H 0.022 0.978 28 H 0.018 0.982 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.341 0.659 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.312 -16.266 -0.528 32.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.168 1.168 7 C -0.574 4.574 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.129 4.129 11 C -0.057 4.057 12 N -0.326 5.326 13 C -0.078 4.078 14 C 0.026 3.974 15 H 0.093 0.907 16 C -0.182 4.182 17 C -0.127 4.127 18 H 0.133 0.867 19 C -0.149 4.149 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.151 4.151 23 C 0.017 3.983 24 H 0.063 0.937 25 O -0.298 6.298 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.159 0.841 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 27.906 -16.251 -1.285 32.319 hybrid contribution -0.426 1.146 0.838 1.482 sum 27.481 -15.105 -0.447 31.362 Atomic orbital electron populations 1.70083 1.08409 1.28241 1.52682 1.26104 0.95707 1.03801 0.94002 0.85566 0.79468 0.77765 0.79264 1.19127 1.20778 1.16799 1.21524 0.92305 0.93073 1.50488 0.95410 1.19483 0.93779 0.94908 0.96513 1.21264 0.94101 0.96967 1.00551 1.21870 0.94560 0.89151 1.00162 1.60355 1.08249 1.13523 1.50470 1.22396 0.87690 0.96745 1.00970 1.22830 0.95519 0.91920 0.87093 0.90743 1.23416 0.93160 0.99658 1.01943 1.22879 0.99842 0.95213 0.94773 0.86655 1.21509 1.01813 0.93604 0.97977 1.21520 0.98486 0.97837 0.97529 1.21510 0.98521 0.97213 0.98316 1.21217 1.02683 0.93662 0.97587 1.22246 0.85291 0.96553 0.94179 0.93682 1.88519 1.29989 1.77954 1.33378 0.92444 0.95966 0.96368 0.93765 0.93459 0.94806 0.91644 0.84058 0.93071 0.91542 0.88379 0.89889 0.90394 0.93088 0.91402 0.90655 0.93532 0.91118 0.92790 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.77 13.96 21.45 0.30 -61.47 16 2 C 0.00 0.01 5.47 84.65 0.46 0.47 16 3 Si 0.96 45.42 27.47 68.60 1.88 47.31 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.24 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.54 -32.49 9.66 25.60 0.25 -32.24 16 8 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.81 5.41 30.60 0.17 -3.64 16 11 C 0.07 2.38 5.69 86.30 0.49 2.87 16 12 N -0.69 -20.64 6.48 -513.91 -3.33 -23.97 16 13 C 0.05 1.19 5.23 86.30 0.45 1.65 16 14 C 0.08 1.72 2.94 31.12 0.09 1.82 16 15 H 0.07 1.52 7.85 -2.39 -0.02 1.51 16 16 C -0.14 -1.96 5.90 32.19 0.19 -1.77 16 17 C -0.11 -1.41 3.73 -9.38 -0.03 -1.45 16 18 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 19 C -0.11 -1.39 4.91 30.49 0.15 -1.24 16 20 C -0.12 -1.38 5.92 30.57 0.18 -1.20 16 21 C -0.12 -1.85 5.93 30.63 0.18 -1.66 16 22 C -0.11 -1.90 5.63 29.96 0.17 -1.73 16 23 C 0.07 1.41 3.06 30.35 0.09 1.50 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 25 O -0.38 -9.70 10.68 -148.98 -1.59 -11.29 16 26 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 27 H 0.02 1.04 7.20 -2.39 -0.02 1.03 16 28 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.34 9.58 8.73 -89.69 -0.78 8.79 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.03 7.96 -2.39 -0.02 1.01 16 37 H 0.08 1.05 7.86 -2.39 -0.02 1.03 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 0.82 6.97 -2.39 -0.02 0.80 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -70.61 345.43 0.31 -70.30 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.09 Total: 16.07 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 2.96 Total: -36.95 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -3.03 Total: -85.44 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -1.59 Total: -11.29 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -70.61 0.31 -70.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379022962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.175 kcal (2) G-P(sol) polarization free energy of solvation -70.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds