Wall clock time and date at job start Mon Mar 30 2020 07:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99729 * 2 1 4 4 H 1.48497 * 109.47148 * 269.99880 * 3 2 1 5 5 H 1.48500 * 109.46971 * 30.00407 * 3 2 1 6 6 H 1.48501 * 109.46821 * 149.99926 * 3 2 1 7 7 C 1.37873 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00357 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99766 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47285 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47313 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47121 * 179.97438 * 11 10 9 13 13 C 1.46904 * 110.99810 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46861 * 180.02562 * 13 12 11 15 15 H 1.08993 * 109.86523 * 305.98930 * 14 13 12 16 16 C 1.55376 * 109.87025 * 184.99760 * 14 13 12 17 17 C 1.53884 * 101.15134 * 218.86039 * 16 14 13 18 18 H 1.08998 * 111.43043 * 279.01537 * 17 16 14 19 19 C 1.52016 * 114.90635 * 151.23617 * 17 16 14 20 20 C 1.53672 * 107.31215 * 185.30806 * 19 17 16 21 21 C 1.52584 * 111.48826 * 58.30883 * 20 19 17 22 22 C 1.53780 * 111.32477 * 305.09938 * 21 20 19 23 23 C 1.51312 * 107.41414 * 57.16562 * 22 21 20 24 24 H 1.08999 * 108.35252 * 53.04542 * 23 22 21 25 25 O 1.42203 * 119.47496 * 177.23268 * 23 22 21 26 26 H 0.97011 * 120.00027 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47251 * 59.99967 * 9 7 2 28 28 H 1.09004 * 109.47286 * 300.00039 * 9 7 2 29 29 H 1.08999 * 109.47286 * 59.99641 * 10 9 7 30 30 H 1.09004 * 109.46706 * 300.00046 * 10 9 7 31 31 H 1.08999 * 109.47304 * 59.99570 * 11 10 9 32 32 H 1.08997 * 109.46832 * 299.99758 * 11 10 9 33 33 H 1.00892 * 111.00173 * 303.95306 * 12 11 10 34 34 H 1.08998 * 109.47260 * 59.99888 * 13 12 11 35 35 H 1.09006 * 109.47122 * 300.00119 * 13 12 11 36 36 H 1.08996 * 111.08615 * 100.88727 * 16 14 13 37 37 H 1.09001 * 111.11976 * 336.84437 * 16 14 13 38 38 H 1.09005 * 109.88592 * 304.75961 * 19 17 16 39 39 H 1.09000 * 109.88877 * 65.85578 * 19 17 16 40 40 H 1.08997 * 109.07881 * 178.82627 * 20 19 17 41 41 H 1.08998 * 109.07959 * 297.79046 * 20 19 17 42 42 H 1.09004 * 109.11112 * 184.62411 * 21 20 19 43 43 H 1.09000 * 109.05842 * 65.53939 * 21 20 19 44 44 H 1.09006 * 109.87042 * 297.69248 * 22 21 20 45 45 H 1.09002 * 109.93061 * 176.67958 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4350 -6.1036 -0.0018 13 6 1.7346 -7.3949 -0.0018 14 6 2.7596 -8.5309 -0.0018 15 1 3.4549 -8.4023 -0.8312 16 6 2.0326 -9.8982 -0.1291 17 6 2.8683 -10.7696 0.8250 18 1 3.7820 -11.1211 0.3459 19 6 2.1098 -11.9151 1.4756 20 6 3.0611 -12.5796 2.4831 21 6 3.5497 -11.5838 3.5309 22 6 4.1976 -10.3535 2.8740 23 6 3.1695 -9.7403 1.9485 24 1 2.2552 -9.5688 2.5166 25 8 3.4838 -8.5428 1.2489 26 1 -0.4851 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6043 0.8894 30 1 2.8720 -3.6042 -0.8906 31 1 0.8539 -5.0445 -0.8913 32 1 0.8535 -5.0450 0.8886 33 1 3.0697 -6.0361 -0.7831 34 1 1.1094 -7.4692 -0.8915 35 1 1.1100 -7.4696 0.8884 36 1 2.0830 -10.2755 -1.1505 37 1 0.9989 -9.8264 0.2093 38 1 1.2307 -11.5311 1.9932 39 1 1.8085 -12.6382 0.7176 40 1 2.5379 -13.3947 2.9830 41 1 3.9203 -12.9844 1.9483 42 1 4.2822 -12.0725 4.1734 43 1 2.7032 -11.2605 4.1367 44 1 5.0753 -10.6573 2.3033 45 1 4.4848 -9.6320 3.6388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379022964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:10 Heat of formation + Delta-G solvation = -79.605848 kcal Electronic energy + Delta-G solvation = -20250.800290 eV Core-core repulsion = 17266.477736 eV Total energy + Delta-G solvation = -2984.322554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.59257 -37.08736 -35.83444 -33.53324 -32.74947 -31.36699 -29.99967 -29.22912 -26.48311 -24.49509 -22.57779 -22.21194 -21.50100 -21.28754 -20.28425 -19.81822 -16.82671 -16.26437 -15.99144 -15.50317 -15.21501 -14.85209 -14.54978 -14.29848 -14.09089 -13.68525 -13.37256 -13.26552 -12.94003 -12.41289 -12.26954 -12.10151 -12.05131 -11.72600 -11.42018 -11.30558 -11.17009 -11.12817 -10.91275 -10.79999 -10.77115 -10.51046 -10.40757 -10.15192 -9.62519 -9.47374 -9.25157 -8.98841 -8.29410 -8.02889 -5.94678 -3.96409 3.35908 3.41671 3.46095 3.47303 4.22279 4.27265 4.30904 4.50690 4.58206 4.69244 4.77107 4.88244 4.98717 5.07441 5.09127 5.15241 5.23228 5.34768 5.40732 5.41186 5.47714 5.53055 5.61591 5.62675 5.75032 5.79546 5.81909 5.83716 5.88953 5.97555 5.99300 6.09181 6.15262 6.39631 6.79925 6.83471 7.04757 7.21406 7.43883 7.72853 7.75306 7.90440 8.06335 8.50065 9.10928 9.67278 11.16851 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044583 B = 0.002608 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.897119 B =10735.365537 C =11007.672656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.683 5.683 13 C 0.049 3.951 14 C 0.087 3.913 15 H 0.080 0.920 16 C -0.145 4.145 17 C -0.128 4.128 18 H 0.086 0.914 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.110 4.110 23 C 0.076 3.924 24 H 0.054 0.946 25 O -0.350 6.350 26 H 0.260 0.740 27 H 0.013 0.987 28 H 0.016 0.984 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.336 0.664 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.740 -27.766 2.298 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.314 5.314 13 C -0.081 4.081 14 C 0.029 3.971 15 H 0.098 0.902 16 C -0.183 4.183 17 C -0.146 4.146 18 H 0.105 0.895 19 C -0.145 4.145 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.148 4.148 23 C 0.018 3.982 24 H 0.071 0.929 25 O -0.269 6.269 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.153 0.847 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.797 -27.474 3.074 28.058 hybrid contribution -0.146 0.815 -1.051 1.337 sum 4.650 -26.659 2.023 27.138 Atomic orbital electron populations 1.69974 1.06063 1.26491 1.51202 1.25037 0.94856 0.99264 0.95449 0.86590 0.79894 0.83469 0.78040 1.20722 1.21258 1.19835 1.21273 0.93089 0.91071 1.50113 0.92647 1.19071 0.94039 0.91424 0.97057 1.21614 0.99144 0.92930 1.00758 1.22126 0.94104 0.90966 0.99684 1.60448 1.20132 1.00993 1.49785 1.22326 0.95289 0.89756 1.00703 1.23163 0.93166 0.93638 0.87144 0.90176 1.22988 0.99973 0.94678 1.00623 1.22733 0.99584 0.96201 0.96108 0.89533 1.21438 0.98103 0.96955 0.98019 1.21562 0.99260 0.98058 0.96967 1.21513 1.00599 0.95349 0.97861 1.21366 0.98013 0.96772 0.98658 1.22403 0.97721 0.84402 0.93695 0.92853 1.88534 1.68296 1.38267 1.31836 0.93087 0.96862 0.96600 0.92491 0.93706 0.95998 0.91612 0.84675 0.94644 0.90839 0.90096 0.90252 0.91458 0.91565 0.91842 0.92017 0.91364 0.91824 0.91299 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.34 5.41 -26.73 -0.14 -2.48 16 11 C 0.06 1.10 5.69 -3.83 -0.02 1.08 16 12 N -0.68 -10.99 6.49 -113.78 -0.74 -11.73 16 13 C 0.05 0.65 5.26 -3.82 -0.02 0.63 16 14 C 0.09 1.00 3.71 -25.47 -0.09 0.90 16 15 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 16 C -0.14 -1.25 6.15 -25.01 -0.15 -1.40 16 17 C -0.13 -1.06 2.71 -89.43 -0.24 -1.31 16 18 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 19 C -0.11 -0.72 5.58 -26.88 -0.15 -0.87 16 20 C -0.12 -0.74 5.84 -26.60 -0.16 -0.90 16 21 C -0.12 -0.79 5.83 -26.54 -0.15 -0.94 16 22 C -0.11 -0.98 6.01 -27.18 -0.16 -1.14 16 23 C 0.08 0.80 2.88 -26.35 -0.08 0.73 16 24 H 0.05 0.59 7.80 -51.93 -0.41 0.19 16 25 O -0.35 -4.84 11.05 -35.23 -0.39 -5.23 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.34 5.03 8.73 -39.30 -0.34 4.69 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.66 7.85 -51.93 -0.41 0.26 16 38 H 0.07 0.47 7.95 -51.93 -0.41 0.06 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -31.79 351.21 -10.76 -42.56 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -8.72 Total: -1.91 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -1.93 Total: -19.25 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.00 Total: -38.68 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.39 Total: -5.23 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.79 -10.76 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379022964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.046 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds