Wall clock time and date at job start Mon Mar 30 2020 07:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99729 * 2 1 4 4 H 1.48497 * 109.47148 * 269.99880 * 3 2 1 5 5 H 1.48500 * 109.46971 * 30.00407 * 3 2 1 6 6 H 1.48501 * 109.46821 * 149.99926 * 3 2 1 7 7 C 1.37873 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00357 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99766 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47285 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47313 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47121 * 179.97438 * 11 10 9 13 13 C 1.46904 * 110.99810 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.46861 * 180.02562 * 13 12 11 15 15 H 1.08993 * 109.86523 * 305.98930 * 14 13 12 16 16 C 1.55376 * 109.87025 * 184.99760 * 14 13 12 17 17 C 1.53884 * 101.15134 * 218.86039 * 16 14 13 18 18 H 1.08998 * 111.43043 * 279.01537 * 17 16 14 19 19 C 1.52016 * 114.90635 * 151.23617 * 17 16 14 20 20 C 1.53672 * 107.31215 * 185.30806 * 19 17 16 21 21 C 1.52584 * 111.48826 * 58.30883 * 20 19 17 22 22 C 1.53780 * 111.32477 * 305.09938 * 21 20 19 23 23 C 1.51312 * 107.41414 * 57.16562 * 22 21 20 24 24 H 1.08999 * 108.35252 * 53.04542 * 23 22 21 25 25 O 1.42203 * 119.47496 * 177.23268 * 23 22 21 26 26 H 0.97011 * 120.00027 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47251 * 59.99967 * 9 7 2 28 28 H 1.09004 * 109.47286 * 300.00039 * 9 7 2 29 29 H 1.08999 * 109.47286 * 59.99641 * 10 9 7 30 30 H 1.09004 * 109.46706 * 300.00046 * 10 9 7 31 31 H 1.08999 * 109.47304 * 59.99570 * 11 10 9 32 32 H 1.08997 * 109.46832 * 299.99758 * 11 10 9 33 33 H 1.00892 * 111.00173 * 303.95306 * 12 11 10 34 34 H 1.08998 * 109.47260 * 59.99888 * 13 12 11 35 35 H 1.09006 * 109.47122 * 300.00119 * 13 12 11 36 36 H 1.08996 * 111.08615 * 100.88727 * 16 14 13 37 37 H 1.09001 * 111.11976 * 336.84437 * 16 14 13 38 38 H 1.09005 * 109.88592 * 304.75961 * 19 17 16 39 39 H 1.09000 * 109.88877 * 65.85578 * 19 17 16 40 40 H 1.08997 * 109.07881 * 178.82627 * 20 19 17 41 41 H 1.08998 * 109.07959 * 297.79046 * 20 19 17 42 42 H 1.09004 * 109.11112 * 184.62411 * 21 20 19 43 43 H 1.09000 * 109.05842 * 65.53939 * 21 20 19 44 44 H 1.09006 * 109.87042 * 297.69248 * 22 21 20 45 45 H 1.09002 * 109.93061 * 176.67958 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4350 -6.1036 -0.0018 13 6 1.7346 -7.3949 -0.0018 14 6 2.7596 -8.5309 -0.0018 15 1 3.4549 -8.4023 -0.8312 16 6 2.0326 -9.8982 -0.1291 17 6 2.8683 -10.7696 0.8250 18 1 3.7820 -11.1211 0.3459 19 6 2.1098 -11.9151 1.4756 20 6 3.0611 -12.5796 2.4831 21 6 3.5497 -11.5838 3.5309 22 6 4.1976 -10.3535 2.8740 23 6 3.1695 -9.7403 1.9485 24 1 2.2552 -9.5688 2.5166 25 8 3.4838 -8.5428 1.2489 26 1 -0.4851 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6043 0.8894 30 1 2.8720 -3.6042 -0.8906 31 1 0.8539 -5.0445 -0.8913 32 1 0.8535 -5.0450 0.8886 33 1 3.0697 -6.0361 -0.7831 34 1 1.1094 -7.4692 -0.8915 35 1 1.1100 -7.4696 0.8884 36 1 2.0830 -10.2755 -1.1505 37 1 0.9989 -9.8264 0.2093 38 1 1.2307 -11.5311 1.9932 39 1 1.8085 -12.6382 0.7176 40 1 2.5379 -13.3947 2.9830 41 1 3.9203 -12.9844 1.9483 42 1 4.2822 -12.0725 4.1734 43 1 2.7032 -11.2605 4.1367 44 1 5.0753 -10.6573 2.3033 45 1 4.4848 -9.6320 3.6388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379022964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:09 Heat of formation + Delta-G solvation = -99.160106 kcal Electronic energy + Delta-G solvation = -20251.648226 eV Core-core repulsion = 17266.477736 eV Total energy + Delta-G solvation = -2985.170490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36904 -38.11118 -37.02564 -35.43793 -33.75168 -32.99021 -30.65765 -30.41247 -28.08560 -25.85569 -23.89304 -23.30401 -22.38140 -22.12282 -21.67644 -20.80468 -18.50158 -17.71852 -16.86190 -16.66686 -16.53751 -16.04192 -15.81556 -15.43468 -15.11963 -14.76364 -14.48300 -14.29915 -14.03469 -13.71602 -13.62067 -13.27658 -13.06111 -12.88652 -12.77250 -12.61016 -12.50021 -12.33838 -12.14599 -11.97943 -11.79134 -11.55774 -11.48255 -11.46515 -11.33713 -11.04834 -10.81293 -10.56463 -10.35943 -9.31909 -8.21198 -6.32470 1.39132 1.41150 1.52620 2.40440 2.67154 3.11596 3.20962 3.54469 3.66364 3.75883 4.02752 4.07633 4.14286 4.21282 4.25287 4.33542 4.37608 4.40305 4.48823 4.53899 4.56195 4.67009 4.70175 4.77045 4.84953 4.94320 4.95979 4.98980 5.07615 5.11935 5.17972 5.21485 5.22359 5.25396 5.32125 5.37795 5.50404 5.52816 5.73047 5.84149 6.01482 6.20804 6.27019 6.51155 6.84058 7.36697 8.90874 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.044583 B = 0.002608 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.897119 B =10735.365537 C =11007.672656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.073 3.927 12 N -0.691 5.691 13 C 0.050 3.950 14 C 0.084 3.916 15 H 0.086 0.914 16 C -0.137 4.137 17 C -0.118 4.118 18 H 0.090 0.910 19 C -0.106 4.106 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.110 4.110 23 C 0.065 3.935 24 H 0.041 0.959 25 O -0.384 6.384 26 H 0.264 0.736 27 H -0.007 1.007 28 H -0.010 1.010 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.343 0.657 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -29.076 1.741 29.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.323 5.323 13 C -0.079 4.079 14 C 0.027 3.973 15 H 0.104 0.896 16 C -0.175 4.175 17 C -0.137 4.137 18 H 0.108 0.892 19 C -0.143 4.143 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.148 4.148 23 C 0.008 3.992 24 H 0.059 0.941 25 O -0.304 6.304 26 H 0.073 0.927 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.663 -28.810 2.514 29.468 hybrid contribution -0.429 1.213 -0.855 1.545 sum 5.233 -27.597 1.660 28.138 Atomic orbital electron populations 1.70102 1.07815 1.27823 1.51705 1.26020 0.95837 1.03481 0.94658 0.85410 0.78593 0.78216 0.78608 1.19525 1.20559 1.18881 1.21695 0.93529 0.92431 1.50565 0.92323 1.18970 0.94390 0.93094 0.94749 1.21369 0.98023 0.92999 1.00597 1.21820 0.93937 0.90332 0.99475 1.60361 1.20001 1.01461 1.50456 1.22389 0.95810 0.88822 1.00882 1.23236 0.92996 0.94439 0.86646 0.89647 1.22984 0.99719 0.92875 1.01950 1.22696 0.99894 0.96004 0.95062 0.89176 1.21448 0.97857 0.96580 0.98411 1.21563 0.99462 0.97985 0.96665 1.21509 1.00664 0.94672 0.98146 1.21402 0.97966 0.97310 0.98127 1.22588 0.97728 0.84357 0.94562 0.94097 1.88491 1.68848 1.40151 1.32905 0.92709 0.98874 0.99185 0.93362 0.92955 0.95546 0.92558 0.83825 0.92984 0.91955 0.88026 0.90002 0.91848 0.90077 0.90529 0.91440 0.90162 0.92168 0.91061 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.40 13.29 21.45 0.28 -58.11 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 3 Si 0.97 45.55 29.54 68.60 2.03 47.57 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -32.39 9.11 25.60 0.23 -32.15 16 8 H 0.06 3.37 7.74 -2.92 -0.02 3.34 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -4.08 5.41 30.59 0.17 -3.92 16 11 C 0.07 2.73 5.69 86.30 0.49 3.22 16 12 N -0.69 -21.96 6.49 -513.88 -3.33 -25.30 16 13 C 0.05 1.29 5.26 86.30 0.45 1.74 16 14 C 0.08 1.85 3.71 31.41 0.12 1.97 16 15 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 16 C -0.14 -2.10 6.15 31.71 0.20 -1.91 16 17 C -0.12 -1.76 2.71 -10.02 -0.03 -1.79 16 18 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 19 C -0.11 -1.18 5.58 30.50 0.17 -1.01 16 20 C -0.12 -1.19 5.84 30.68 0.18 -1.01 16 21 C -0.11 -1.39 5.83 30.72 0.18 -1.21 16 22 C -0.11 -1.92 6.01 30.31 0.18 -1.73 16 23 C 0.07 1.36 2.88 30.84 0.09 1.45 16 24 H 0.04 0.93 7.80 -2.39 -0.02 0.91 16 25 O -0.38 -10.59 11.05 -148.98 -1.65 -12.24 16 26 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.34 9.99 8.73 -89.70 -0.78 9.20 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.22 7.85 -2.39 -0.02 1.20 16 38 H 0.06 0.77 7.95 -2.38 -0.02 0.76 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -68.65 351.21 0.51 -68.14 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.14 Total: 14.39 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 3.04 Total: -34.46 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -3.05 Total: -83.41 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -1.65 Total: -12.24 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -68.65 0.51 -68.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379022964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.016 kcal (2) G-P(sol) polarization free energy of solvation -68.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds