Wall clock time and date at job start Mon Mar 30 2020 07:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99654 * 2 1 4 4 H 1.48503 * 109.47089 * 240.00192 * 3 2 1 5 5 H 1.48505 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47127 * 119.99912 * 3 2 1 7 7 C 1.37869 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00333 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46935 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47086 * 180.02562 * 11 10 9 13 13 C 1.46897 * 111.00309 * 179.97438 * 12 11 10 14 14 C 1.52992 * 109.47582 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.90334 * 306.09317 * 14 13 12 16 16 C 1.55076 * 109.91557 * 185.00368 * 14 13 12 17 17 C 1.53237 * 103.23205 * 242.21307 * 16 14 13 18 18 H 1.09000 * 110.83194 * 91.01214 * 17 16 14 19 19 C 1.51427 * 115.88895 * 218.71935 * 17 16 14 20 20 C 1.53723 * 107.36037 * 175.83716 * 19 17 16 21 21 C 1.52572 * 111.47692 * 302.01420 * 20 19 17 22 22 C 1.53765 * 111.41056 * 54.73841 * 21 20 19 23 23 C 1.51484 * 107.34737 * 302.55196 * 22 21 20 24 24 H 1.09007 * 109.68418 * 305.75803 * 23 22 21 25 25 O 1.42309 * 117.59425 * 179.54778 * 23 22 21 26 26 H 0.97008 * 120.00681 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46730 * 60.00566 * 9 7 2 28 28 H 1.08995 * 109.47528 * 300.00425 * 9 7 2 29 29 H 1.08998 * 109.46910 * 60.00623 * 10 9 7 30 30 H 1.08995 * 109.47233 * 300.00552 * 10 9 7 31 31 H 1.08998 * 109.47046 * 60.00421 * 11 10 9 32 32 H 1.09002 * 109.47006 * 300.00050 * 11 10 9 33 33 H 1.00897 * 111.00667 * 303.95780 * 12 11 10 34 34 H 1.09004 * 109.46680 * 60.00363 * 13 12 11 35 35 H 1.09001 * 109.47191 * 300.00613 * 13 12 11 36 36 H 1.09002 * 110.69448 * 0.69812 * 16 14 13 37 37 H 1.08997 * 110.69841 * 123.73286 * 16 14 13 38 38 H 1.09006 * 109.87889 * 56.35915 * 19 17 16 39 39 H 1.08999 * 109.83379 * 295.29645 * 19 17 16 40 40 H 1.09002 * 109.07501 * 181.49654 * 20 19 17 41 41 H 1.08995 * 109.01798 * 62.49483 * 20 19 17 42 42 H 1.08996 * 109.09396 * 294.23505 * 21 20 19 43 43 H 1.09004 * 109.08910 * 175.22799 * 21 20 19 44 44 H 1.09000 * 109.87947 * 183.08897 * 22 21 20 45 45 H 1.09004 * 109.94160 * 62.04443 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 6 1.4805 -4.9870 0.0033 12 7 2.4352 -6.1035 0.0049 13 6 1.7350 -7.3949 0.0061 14 6 2.7599 -8.5308 0.0084 15 1 3.4574 -8.4029 -0.8194 16 6 2.0355 -9.8962 -0.1175 17 6 2.3983 -10.6077 1.1902 18 1 1.6548 -10.4049 1.9611 19 6 2.6764 -12.0921 1.0802 20 6 3.1184 -12.5802 2.4693 21 6 4.3483 -11.8235 2.9620 22 6 4.1158 -10.3036 2.9463 23 6 3.7522 -9.9169 1.5275 24 1 4.5197 -10.2750 0.8412 25 8 3.4792 -8.5446 1.2677 26 1 -0.4851 0.8401 -0.0004 27 1 0.6242 -2.5575 -0.8881 28 1 0.6248 -2.5564 0.8919 29 1 2.8720 -3.6034 0.8927 30 1 2.8722 -3.6049 -0.8872 31 1 0.8542 -5.0454 -0.8869 32 1 0.8535 -5.0443 0.8931 33 1 3.0707 -6.0371 -0.7760 34 1 1.1105 -7.4704 -0.8842 35 1 1.1097 -7.4684 0.8958 36 1 0.9573 -9.7547 -0.1928 37 1 2.4104 -10.4534 -0.9760 38 1 3.4713 -12.2676 0.3552 39 1 1.7712 -12.6162 0.7736 40 1 3.3520 -13.6435 2.4155 41 1 2.3014 -12.4303 3.1750 42 1 5.1949 -12.0614 2.3181 43 1 4.5765 -12.1387 3.9802 44 1 5.0259 -9.7863 3.2500 45 1 3.2999 -10.0454 3.6215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379022965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:13 Heat of formation + Delta-G solvation = -79.521306 kcal Electronic energy + Delta-G solvation = -20231.708272 eV Core-core repulsion = 17247.389384 eV Total energy + Delta-G solvation = -2984.318888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63511 -37.08081 -35.86429 -33.56499 -32.77079 -31.37045 -29.97083 -29.23081 -26.44693 -24.45194 -22.43370 -22.21428 -21.75382 -21.18468 -20.34635 -19.89002 -16.46780 -16.20138 -16.01322 -15.80420 -15.12674 -14.92816 -14.60034 -14.37934 -14.06057 -13.74354 -13.38615 -13.14546 -12.92460 -12.47880 -12.27320 -12.16658 -12.02580 -11.63671 -11.41225 -11.31751 -11.17665 -11.01752 -10.83868 -10.76974 -10.76414 -10.50872 -10.44623 -10.18710 -9.62876 -9.59145 -9.26286 -9.00319 -8.28957 -8.04367 -5.94325 -3.96195 3.37767 3.41333 3.44600 3.53524 4.25420 4.28839 4.36440 4.51212 4.55072 4.67604 4.77931 4.85963 5.00824 5.03776 5.11318 5.16541 5.23736 5.33139 5.41244 5.44208 5.47955 5.53401 5.62551 5.65006 5.75922 5.77809 5.82430 5.87193 5.90485 5.97318 5.99336 6.07403 6.11131 6.39544 6.79670 6.82551 6.93531 7.21295 7.42788 7.71885 7.74996 7.90592 8.06521 8.50155 9.10866 9.67407 11.17161 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046477 B = 0.002587 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.299668 B =10820.316743 C =11131.282869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.684 5.684 13 C 0.061 3.939 14 C 0.082 3.918 15 H 0.068 0.932 16 C -0.145 4.145 17 C -0.127 4.127 18 H 0.085 0.915 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.109 4.109 23 C 0.070 3.930 24 H 0.057 0.943 25 O -0.342 6.342 26 H 0.260 0.740 27 H 0.013 0.987 28 H 0.016 0.984 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.022 0.978 32 H 0.066 0.934 33 H 0.336 0.664 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.487 -27.830 1.808 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.315 5.315 13 C -0.069 4.069 14 C 0.024 3.976 15 H 0.086 0.914 16 C -0.183 4.183 17 C -0.146 4.146 18 H 0.104 0.896 19 C -0.144 4.144 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.147 4.147 23 C 0.011 3.989 24 H 0.075 0.925 25 O -0.261 6.261 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.153 0.847 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.470 -27.513 2.629 28.174 hybrid contribution -0.015 0.778 -1.105 1.352 sum 5.456 -26.735 1.524 27.328 Atomic orbital electron populations 1.69960 1.06057 1.26614 1.51093 1.25032 0.94857 0.99248 0.95436 0.86650 0.79559 0.83116 0.78625 1.20285 1.21341 1.20207 1.21236 0.93045 0.91087 1.50271 0.92710 1.19064 0.94030 0.91397 0.97064 1.21615 0.99153 0.92937 1.00748 1.22126 0.94089 0.90911 0.99738 1.60458 1.20161 1.01061 1.49819 1.22121 0.94844 0.89025 1.00914 1.23169 0.93131 0.94188 0.87158 0.91416 1.22776 1.01716 0.95724 0.98100 1.22508 0.98590 0.95562 0.97907 0.89642 1.21330 1.01219 0.94531 0.97326 1.21569 0.98112 0.99467 0.96694 1.21502 0.98108 0.94145 1.01547 1.21352 1.02615 0.95432 0.95266 1.22625 0.95867 0.83023 0.97351 0.92508 1.88974 1.75311 1.22833 1.38965 0.93023 0.96858 0.96590 0.92490 0.93717 0.95954 0.91540 0.84703 0.94395 0.90467 0.90252 0.90665 0.91657 0.91598 0.91870 0.91918 0.91980 0.91396 0.90994 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.33 5.41 -26.73 -0.14 -2.48 16 11 C 0.06 1.10 5.69 -3.82 -0.02 1.08 16 12 N -0.68 -10.98 6.49 -113.78 -0.74 -11.72 16 13 C 0.06 0.80 5.17 -3.83 -0.02 0.78 16 14 C 0.08 0.94 3.60 -25.64 -0.09 0.85 16 15 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 16 C -0.14 -1.28 6.31 -25.51 -0.16 -1.44 16 17 C -0.13 -1.10 2.67 -89.86 -0.24 -1.34 16 18 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 19 C -0.11 -0.71 5.57 -27.15 -0.15 -0.86 16 20 C -0.12 -0.75 5.85 -26.57 -0.16 -0.91 16 21 C -0.12 -0.77 5.84 -26.55 -0.16 -0.93 16 22 C -0.11 -0.97 5.97 -27.10 -0.16 -1.14 16 23 C 0.07 0.72 2.76 -26.06 -0.07 0.65 16 24 H 0.06 0.56 7.93 -51.93 -0.41 0.15 16 25 O -0.34 -4.72 11.17 -35.23 -0.39 -5.12 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.34 5.01 8.73 -39.29 -0.34 4.67 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16 37 H 0.07 0.56 8.04 -51.93 -0.42 0.15 16 38 H 0.06 0.42 8.00 -51.93 -0.42 0.01 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.68 8.10 -51.93 -0.42 0.25 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -31.69 350.98 -10.76 -42.45 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -8.71 Total: -1.90 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -1.92 Total: -19.27 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.00 Total: -38.66 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.39 Total: -5.12 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.69 -10.76 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379022965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.067 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds