Wall clock time and date at job start Mon Mar 30 2020 07:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99654 * 2 1 4 4 H 1.48503 * 109.47089 * 240.00192 * 3 2 1 5 5 H 1.48505 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47127 * 119.99912 * 3 2 1 7 7 C 1.37869 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00333 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46935 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47086 * 180.02562 * 11 10 9 13 13 C 1.46897 * 111.00309 * 179.97438 * 12 11 10 14 14 C 1.52992 * 109.47582 * 180.02562 * 13 12 11 15 15 H 1.09003 * 109.90334 * 306.09317 * 14 13 12 16 16 C 1.55076 * 109.91557 * 185.00368 * 14 13 12 17 17 C 1.53237 * 103.23205 * 242.21307 * 16 14 13 18 18 H 1.09000 * 110.83194 * 91.01214 * 17 16 14 19 19 C 1.51427 * 115.88895 * 218.71935 * 17 16 14 20 20 C 1.53723 * 107.36037 * 175.83716 * 19 17 16 21 21 C 1.52572 * 111.47692 * 302.01420 * 20 19 17 22 22 C 1.53765 * 111.41056 * 54.73841 * 21 20 19 23 23 C 1.51484 * 107.34737 * 302.55196 * 22 21 20 24 24 H 1.09007 * 109.68418 * 305.75803 * 23 22 21 25 25 O 1.42309 * 117.59425 * 179.54778 * 23 22 21 26 26 H 0.97008 * 120.00681 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46730 * 60.00566 * 9 7 2 28 28 H 1.08995 * 109.47528 * 300.00425 * 9 7 2 29 29 H 1.08998 * 109.46910 * 60.00623 * 10 9 7 30 30 H 1.08995 * 109.47233 * 300.00552 * 10 9 7 31 31 H 1.08998 * 109.47046 * 60.00421 * 11 10 9 32 32 H 1.09002 * 109.47006 * 300.00050 * 11 10 9 33 33 H 1.00897 * 111.00667 * 303.95780 * 12 11 10 34 34 H 1.09004 * 109.46680 * 60.00363 * 13 12 11 35 35 H 1.09001 * 109.47191 * 300.00613 * 13 12 11 36 36 H 1.09002 * 110.69448 * 0.69812 * 16 14 13 37 37 H 1.08997 * 110.69841 * 123.73286 * 16 14 13 38 38 H 1.09006 * 109.87889 * 56.35915 * 19 17 16 39 39 H 1.08999 * 109.83379 * 295.29645 * 19 17 16 40 40 H 1.09002 * 109.07501 * 181.49654 * 20 19 17 41 41 H 1.08995 * 109.01798 * 62.49483 * 20 19 17 42 42 H 1.08996 * 109.09396 * 294.23505 * 21 20 19 43 43 H 1.09004 * 109.08910 * 175.22799 * 21 20 19 44 44 H 1.09000 * 109.87947 * 183.08897 * 22 21 20 45 45 H 1.09004 * 109.94160 * 62.04443 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 6 1.4805 -4.9870 0.0033 12 7 2.4352 -6.1035 0.0049 13 6 1.7350 -7.3949 0.0061 14 6 2.7599 -8.5308 0.0084 15 1 3.4574 -8.4029 -0.8194 16 6 2.0355 -9.8962 -0.1175 17 6 2.3983 -10.6077 1.1902 18 1 1.6548 -10.4049 1.9611 19 6 2.6764 -12.0921 1.0802 20 6 3.1184 -12.5802 2.4693 21 6 4.3483 -11.8235 2.9620 22 6 4.1158 -10.3036 2.9463 23 6 3.7522 -9.9169 1.5275 24 1 4.5197 -10.2750 0.8412 25 8 3.4792 -8.5446 1.2677 26 1 -0.4851 0.8401 -0.0004 27 1 0.6242 -2.5575 -0.8881 28 1 0.6248 -2.5564 0.8919 29 1 2.8720 -3.6034 0.8927 30 1 2.8722 -3.6049 -0.8872 31 1 0.8542 -5.0454 -0.8869 32 1 0.8535 -5.0443 0.8931 33 1 3.0707 -6.0371 -0.7760 34 1 1.1105 -7.4704 -0.8842 35 1 1.1097 -7.4684 0.8958 36 1 0.9573 -9.7547 -0.1928 37 1 2.4104 -10.4534 -0.9760 38 1 3.4713 -12.2676 0.3552 39 1 1.7712 -12.6162 0.7736 40 1 3.3520 -13.6435 2.4155 41 1 2.3014 -12.4303 3.1750 42 1 5.1949 -12.0614 2.3181 43 1 4.5765 -12.1387 3.9802 44 1 5.0259 -9.7863 3.2500 45 1 3.2999 -10.0454 3.6215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379022965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:12 Heat of formation + Delta-G solvation = -98.995665 kcal Electronic energy + Delta-G solvation = -20232.552743 eV Core-core repulsion = 17247.389384 eV Total energy + Delta-G solvation = -2985.163359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.40950 -38.10794 -37.03196 -35.45354 -33.79978 -32.98376 -30.62867 -30.41736 -28.05742 -25.79296 -23.87241 -23.09403 -22.70165 -22.09125 -21.63989 -20.90906 -18.49440 -17.42319 -16.89461 -16.67505 -16.50528 -16.18366 -15.80142 -15.48200 -15.14449 -14.84774 -14.50105 -14.32322 -13.84174 -13.82529 -13.57290 -13.22253 -13.17827 -12.87794 -12.74018 -12.57106 -12.51840 -12.34288 -12.09700 -12.01224 -11.66482 -11.54925 -11.46871 -11.40174 -11.34506 -11.07415 -10.88119 -10.55694 -10.44290 -9.32911 -8.20646 -6.32038 1.39328 1.43162 1.51071 2.40771 2.74271 3.12027 3.19048 3.60318 3.66361 3.83581 3.91511 4.09942 4.15650 4.20224 4.28433 4.33650 4.35557 4.39904 4.51587 4.52347 4.58444 4.67986 4.70789 4.80288 4.87231 4.94976 4.97861 4.98828 5.06995 5.11892 5.14900 5.22693 5.23598 5.26772 5.30468 5.38136 5.50537 5.51545 5.73555 5.84504 5.99119 6.13866 6.26786 6.49875 6.84289 7.37037 8.91197 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046477 B = 0.002587 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.299668 B =10820.316743 C =11131.282869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.074 3.926 12 N -0.693 5.693 13 C 0.061 3.939 14 C 0.080 3.920 15 H 0.073 0.927 16 C -0.138 4.138 17 C -0.121 4.121 18 H 0.073 0.927 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.111 4.111 23 C 0.061 3.939 24 H 0.062 0.938 25 O -0.378 6.378 26 H 0.264 0.736 27 H -0.007 1.007 28 H -0.010 1.010 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.057 0.943 33 H 0.343 0.657 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.462 -29.125 1.212 29.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.055 4.055 12 N -0.324 5.324 13 C -0.068 4.068 14 C 0.022 3.978 15 H 0.091 0.909 16 C -0.176 4.176 17 C -0.139 4.139 18 H 0.092 0.908 19 C -0.140 4.140 20 C -0.158 4.158 21 C -0.148 4.148 22 C -0.148 4.148 23 C 0.003 3.997 24 H 0.080 0.920 25 O -0.298 6.298 26 H 0.073 0.927 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.162 0.838 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.456 -28.835 2.030 29.619 hybrid contribution -0.329 1.166 -0.897 1.508 sum 6.127 -27.669 1.133 28.362 Atomic orbital electron populations 1.70092 1.07810 1.27893 1.51624 1.26017 0.95837 1.03470 0.94652 0.85469 0.78264 0.77901 0.79225 1.19029 1.20630 1.19258 1.21671 0.93529 0.92444 1.50686 0.92314 1.18964 0.94389 0.93076 0.94754 1.21369 0.98028 0.93010 1.00591 1.21819 0.93920 0.90257 0.99552 1.60366 1.20033 1.01515 1.50494 1.22184 0.95360 0.88103 1.01121 1.23233 0.92956 0.94907 0.86683 0.90883 1.22764 1.01824 0.94174 0.98867 1.22467 0.97180 0.96859 0.97429 0.90811 1.21334 1.01981 0.92888 0.97819 1.21579 0.97661 1.00236 0.96319 1.21485 0.98688 0.92256 1.02391 1.21398 1.01765 0.97220 0.94463 1.22829 0.96995 0.81787 0.98102 0.92041 1.88931 1.75794 1.25128 1.39949 0.92706 0.98866 0.99184 0.93354 0.92967 0.95463 0.92483 0.83849 0.92657 0.91618 0.89659 0.88745 0.90975 0.90504 0.90286 0.92211 0.91366 0.90477 0.91848 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.37 13.29 21.44 0.28 -58.09 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.55 -32.42 9.11 25.60 0.23 -32.18 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -4.07 5.41 30.59 0.17 -3.91 16 11 C 0.07 2.73 5.69 86.30 0.49 3.22 16 12 N -0.69 -21.91 6.49 -513.90 -3.33 -25.25 16 13 C 0.06 1.57 5.17 86.30 0.45 2.02 16 14 C 0.08 1.76 3.60 31.30 0.11 1.87 16 15 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 16 C -0.14 -2.16 6.31 31.38 0.20 -1.97 16 17 C -0.12 -1.92 2.67 -10.30 -0.03 -1.94 16 18 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 19 C -0.10 -1.13 5.57 30.32 0.17 -0.96 16 20 C -0.12 -1.23 5.85 30.70 0.18 -1.05 16 21 C -0.11 -1.30 5.84 30.71 0.18 -1.12 16 22 C -0.11 -1.95 5.97 30.36 0.18 -1.76 16 23 C 0.06 1.21 2.76 31.03 0.09 1.29 16 24 H 0.06 1.14 7.93 -2.38 -0.02 1.13 16 25 O -0.38 -10.40 11.17 -148.98 -1.66 -12.06 16 26 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.34 9.93 8.73 -89.70 -0.78 9.15 16 34 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.24 7.73 -2.39 -0.02 1.23 16 37 H 0.09 1.14 8.04 -2.39 -0.02 1.12 16 38 H 0.07 0.72 8.00 -2.38 -0.02 0.70 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.18 8.10 -2.38 -0.02 1.16 16 Total: -1.00 -68.37 350.98 0.48 -67.90 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.14 Total: 14.57 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: 3.02 Total: -34.59 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -3.05 Total: -83.33 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -1.66 Total: -12.06 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.37 0.48 -67.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379022965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.099 kcal (2) G-P(sol) polarization free energy of solvation -68.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds