Wall clock time and date at job start Mon Mar 30 2020 07:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99890 * 2 1 4 4 H 1.48504 * 109.46679 * 240.00232 * 3 2 1 5 5 H 1.48498 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47509 * 120.00237 * 3 2 1 7 7 C 1.38812 * 120.00464 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00398 * 181.75327 * 7 2 1 9 9 N 1.36940 * 119.99616 * 1.76023 * 7 2 1 10 10 C 1.46494 * 120.00049 * 177.19466 * 9 7 2 11 11 C 1.53004 * 109.47007 * 277.16572 * 10 9 7 12 12 C 1.52998 * 109.47259 * 294.72097 * 11 10 9 13 13 C 1.52997 * 109.47032 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47419 * 59.99650 * 13 12 11 15 15 O 1.42901 * 109.47058 * 180.02562 * 14 13 12 16 16 C 1.53005 * 109.46974 * 299.99862 * 14 13 12 17 17 C 1.52997 * 109.46636 * 60.00305 * 16 14 13 18 18 C 1.46503 * 120.00118 * 357.18715 * 9 7 2 19 19 C 1.54968 * 110.92374 * 169.67143 * 18 9 7 20 20 C 1.54263 * 104.15842 * 156.29927 * 19 18 9 21 21 C 1.53877 * 106.64216 * 336.44905 * 20 19 18 22 22 C 1.54266 * 106.59838 * 359.97438 * 21 20 19 23 23 H 0.97003 * 120.00040 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47616 * 37.16587 * 10 9 7 25 25 H 1.09001 * 109.47588 * 157.17039 * 10 9 7 26 26 H 1.09000 * 109.46566 * 54.72001 * 11 10 9 27 27 H 1.09003 * 109.46756 * 299.99576 * 12 11 10 28 28 H 1.08991 * 109.47471 * 59.99835 * 12 11 10 29 29 H 1.09011 * 109.47006 * 299.99637 * 13 12 11 30 30 H 1.08998 * 109.47374 * 179.97438 * 13 12 11 31 31 H 1.08995 * 109.46794 * 60.00250 * 14 13 12 32 32 H 0.96704 * 113.99747 * 299.99486 * 15 14 13 33 33 H 1.09003 * 109.47183 * 300.00230 * 16 14 13 34 34 H 1.09000 * 109.46880 * 179.97438 * 16 14 13 35 35 H 1.09004 * 109.46679 * 179.97438 * 17 16 14 36 36 H 1.08998 * 109.47785 * 59.99820 * 17 16 14 37 37 H 1.09010 * 110.67056 * 46.36983 * 18 9 7 38 38 H 1.09000 * 110.47351 * 37.64481 * 19 18 9 39 39 H 1.08995 * 110.52847 * 274.97875 * 19 18 9 40 40 H 1.08997 * 110.03365 * 217.14361 * 20 19 18 41 41 H 1.08999 * 110.03328 * 95.75431 * 20 19 18 42 42 H 1.09001 * 110.03719 * 119.25931 * 21 20 19 43 43 H 1.09002 * 110.03397 * 240.64400 * 21 20 19 44 44 H 1.08999 * 110.48881 * 142.28845 * 22 21 20 45 45 H 1.09002 * 110.48436 * 264.79911 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0899 -1.2023 0.0292 9 7 1.3261 -2.3878 -0.0354 10 6 2.0589 -3.6548 -0.0969 11 6 2.4472 -3.9494 -1.5472 12 6 1.1826 -4.1795 -2.3771 13 6 1.5709 -4.4748 -3.8272 14 6 2.4477 -5.7278 -3.8754 15 8 2.8108 -6.0032 -5.2298 16 6 3.7123 -5.4976 -3.0456 17 6 3.3239 -5.2024 -1.5955 18 6 -0.1387 -2.3892 -0.0121 19 6 -0.6957 -3.8025 -0.3187 20 6 -2.0998 -3.8015 0.3202 21 6 -2.0808 -2.7298 1.4242 22 6 -0.6653 -2.1165 1.4188 23 1 -0.4850 0.8401 -0.0004 24 1 2.9595 -3.5837 0.5131 25 1 1.4270 -4.4588 0.2805 26 1 3.0000 -3.1028 -1.9544 27 1 0.6298 -5.0261 -1.9698 28 1 0.5578 -3.2871 -2.3424 29 1 2.1240 -3.6284 -4.2348 30 1 0.6701 -4.6392 -4.4183 31 1 1.8946 -6.5740 -3.4679 32 1 2.0571 -6.1597 -5.8151 33 1 4.2653 -4.6512 -3.4531 34 1 4.3367 -6.3904 -3.0796 35 1 4.2249 -5.0389 -1.0041 36 1 2.7709 -6.0487 -1.1879 37 1 -0.5355 -1.6573 -0.7158 38 1 -0.0685 -4.5672 0.1395 39 1 -0.7664 -3.9602 -1.3949 40 1 -2.3140 -4.7790 0.7524 41 1 -2.8509 -3.5522 -0.4292 42 1 -2.8221 -1.9599 1.2101 43 1 -2.2866 -3.1870 2.3921 44 1 -0.7133 -1.0444 1.6097 45 1 -0.0342 -2.6071 2.1597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380112844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:59 Heat of formation + Delta-G solvation = -38.645108 kcal Electronic energy + Delta-G solvation = -22368.031772 eV Core-core repulsion = 19385.485410 eV Total energy + Delta-G solvation = -2982.546363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.09021 -37.53009 -35.58312 -33.83618 -31.61408 -30.53546 -29.10516 -27.50717 -26.71987 -24.98022 -22.40884 -22.38826 -20.83447 -19.69992 -19.06470 -18.30814 -17.09762 -16.77902 -15.31876 -15.07863 -14.58571 -14.29063 -13.99923 -13.70910 -13.47059 -13.21482 -12.99237 -12.32472 -12.17106 -11.92430 -11.77402 -11.58726 -11.28743 -10.94477 -10.91199 -10.78684 -10.56090 -10.45659 -10.26043 -10.11043 -10.03851 -9.88105 -9.72268 -9.62343 -9.55510 -9.34248 -9.21976 -9.18499 -8.25330 -6.72526 -5.50467 -3.00976 3.42594 3.48063 3.48582 4.30776 4.54033 4.97309 5.01656 5.28977 5.37748 5.48304 5.55337 5.60161 5.65431 5.73117 5.76195 5.80266 5.90335 5.91810 6.05711 6.19108 6.20435 6.32432 6.40155 6.41859 6.45196 6.49318 6.59797 6.66537 6.71763 6.75805 6.81136 6.83230 6.88393 6.97638 7.04863 7.17374 7.35475 7.48464 7.70980 7.72561 8.07119 8.23287 8.52791 9.39507 9.99829 10.41713 11.39226 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016313 B = 0.007103 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.017461 B = 3941.237901 C = 4998.329198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.227 4.227 8 H 0.071 0.929 9 N -0.597 5.597 10 C 0.149 3.851 11 C -0.108 4.108 12 C -0.106 4.106 13 C -0.151 4.151 14 C 0.105 3.895 15 O -0.575 6.575 16 C -0.108 4.108 17 C -0.110 4.110 18 C 0.207 3.793 19 C -0.163 4.163 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.121 4.121 23 H 0.248 0.752 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.373 0.627 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.115 0.885 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.037 0.963 44 H 0.093 0.907 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.113 -10.398 -4.118 11.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.357 4.357 8 H 0.089 0.911 9 N -0.317 5.317 10 C 0.021 3.979 11 C -0.129 4.129 12 C -0.143 4.143 13 C -0.188 4.188 14 C 0.047 3.953 15 O -0.380 6.380 16 C -0.146 4.146 17 C -0.149 4.149 18 C 0.101 3.899 19 C -0.201 4.201 20 C -0.156 4.156 21 C -0.161 4.161 22 C -0.160 4.160 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.219 0.781 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.132 0.868 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.111 0.889 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.397 -10.141 -3.852 10.855 hybrid contribution -0.161 0.768 -0.118 0.793 sum 0.237 -9.373 -3.970 10.182 Atomic orbital electron populations 1.69991 1.04492 1.23908 1.57782 1.24733 0.95636 0.97446 1.02866 0.86283 0.78499 0.83770 0.77714 1.21453 1.21778 1.21542 1.19279 0.90731 0.83741 1.41901 0.91087 1.44084 1.01652 1.00578 1.85402 1.20866 0.95067 0.89272 0.92662 1.21838 0.95337 0.96108 0.99594 1.21775 0.98356 1.01877 0.92320 1.22301 0.98980 0.98417 0.99150 1.21888 0.95955 0.95848 0.81635 1.86491 1.37233 1.93666 1.20619 1.21459 0.96222 1.01706 0.95199 1.21538 0.99968 0.98751 0.94599 1.21833 0.81160 0.90657 0.96224 1.23486 0.95573 1.01457 0.99555 1.22032 0.97793 0.97803 0.97969 1.22116 1.00288 0.97240 0.96471 1.23191 0.91506 1.02250 0.99095 0.94084 0.94751 0.93149 0.91150 0.92652 0.89814 0.91470 0.92688 0.93249 0.78067 0.91505 0.92219 0.91843 0.92483 0.86766 0.92409 0.92001 0.93844 0.93154 0.93057 0.94390 0.88911 0.95600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.64 7.31 55.49 0.41 -24.23 16 2 C -0.01 -0.33 5.39 -17.43 -0.09 -0.42 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -5.93 9.72 -15.06 -0.15 -6.07 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.60 -13.93 2.35 -163.35 -0.38 -14.31 16 10 C 0.15 2.90 4.87 -4.04 -0.02 2.88 16 11 C -0.11 -1.84 2.34 -90.62 -0.21 -2.05 16 12 C -0.11 -1.72 3.25 -26.73 -0.09 -1.81 16 13 C -0.15 -2.15 5.54 -26.73 -0.15 -2.30 16 14 C 0.11 1.39 3.47 -26.73 -0.09 1.30 16 15 O -0.57 -7.46 13.32 -35.23 -0.47 -7.93 16 16 C -0.11 -1.49 5.57 -26.73 -0.15 -1.64 16 17 C -0.11 -1.56 5.20 -26.73 -0.14 -1.70 16 18 C 0.21 4.69 1.90 -65.89 -0.12 4.56 16 19 C -0.16 -3.04 4.10 -25.03 -0.10 -3.15 16 20 C -0.12 -2.05 6.80 -25.61 -0.17 -2.23 16 21 C -0.12 -2.34 6.80 -25.61 -0.17 -2.52 16 22 C -0.12 -2.75 5.91 -25.07 -0.15 -2.90 16 23 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 24 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 25 H 0.05 0.94 5.31 -51.93 -0.28 0.66 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.05 0.85 6.69 -51.93 -0.35 0.50 16 28 H 0.08 1.61 5.76 -51.93 -0.30 1.32 16 29 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.37 3.26 9.08 45.56 0.41 3.67 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.12 3.00 5.90 -51.92 -0.31 2.69 16 38 H 0.06 1.06 5.31 -51.93 -0.28 0.78 16 39 H 0.06 1.10 5.08 -51.93 -0.26 0.84 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 324.02 15.07 4.88 4.88 Total: -1.00 -27.25 324.02 -9.53 -36.78 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.13 Total: 6.27 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -1.81 Total: -18.05 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.02 Total: -38.55 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.47 Total: -7.93 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.25 -9.53 -36.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380112844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.861 kcal (2) G-P(sol) polarization free energy of solvation -27.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds