Wall clock time and date at job start Mon Mar 30 2020 07:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99890 * 2 1 4 4 H 1.48504 * 109.46679 * 240.00232 * 3 2 1 5 5 H 1.48498 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47509 * 120.00237 * 3 2 1 7 7 C 1.38812 * 120.00464 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00398 * 181.75327 * 7 2 1 9 9 N 1.36940 * 119.99616 * 1.76023 * 7 2 1 10 10 C 1.46494 * 120.00049 * 177.19466 * 9 7 2 11 11 C 1.53004 * 109.47007 * 277.16572 * 10 9 7 12 12 C 1.52998 * 109.47259 * 294.72097 * 11 10 9 13 13 C 1.52997 * 109.47032 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47419 * 59.99650 * 13 12 11 15 15 O 1.42901 * 109.47058 * 180.02562 * 14 13 12 16 16 C 1.53005 * 109.46974 * 299.99862 * 14 13 12 17 17 C 1.52997 * 109.46636 * 60.00305 * 16 14 13 18 18 C 1.46503 * 120.00118 * 357.18715 * 9 7 2 19 19 C 1.54968 * 110.92374 * 169.67143 * 18 9 7 20 20 C 1.54263 * 104.15842 * 156.29927 * 19 18 9 21 21 C 1.53877 * 106.64216 * 336.44905 * 20 19 18 22 22 C 1.54266 * 106.59838 * 359.97438 * 21 20 19 23 23 H 0.97003 * 120.00040 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47616 * 37.16587 * 10 9 7 25 25 H 1.09001 * 109.47588 * 157.17039 * 10 9 7 26 26 H 1.09000 * 109.46566 * 54.72001 * 11 10 9 27 27 H 1.09003 * 109.46756 * 299.99576 * 12 11 10 28 28 H 1.08991 * 109.47471 * 59.99835 * 12 11 10 29 29 H 1.09011 * 109.47006 * 299.99637 * 13 12 11 30 30 H 1.08998 * 109.47374 * 179.97438 * 13 12 11 31 31 H 1.08995 * 109.46794 * 60.00250 * 14 13 12 32 32 H 0.96704 * 113.99747 * 299.99486 * 15 14 13 33 33 H 1.09003 * 109.47183 * 300.00230 * 16 14 13 34 34 H 1.09000 * 109.46880 * 179.97438 * 16 14 13 35 35 H 1.09004 * 109.46679 * 179.97438 * 17 16 14 36 36 H 1.08998 * 109.47785 * 59.99820 * 17 16 14 37 37 H 1.09010 * 110.67056 * 46.36983 * 18 9 7 38 38 H 1.09000 * 110.47351 * 37.64481 * 19 18 9 39 39 H 1.08995 * 110.52847 * 274.97875 * 19 18 9 40 40 H 1.08997 * 110.03365 * 217.14361 * 20 19 18 41 41 H 1.08999 * 110.03328 * 95.75431 * 20 19 18 42 42 H 1.09001 * 110.03719 * 119.25931 * 21 20 19 43 43 H 1.09002 * 110.03397 * 240.64400 * 21 20 19 44 44 H 1.08999 * 110.48881 * 142.28845 * 22 21 20 45 45 H 1.09002 * 110.48436 * 264.79911 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0899 -1.2023 0.0292 9 7 1.3261 -2.3878 -0.0354 10 6 2.0589 -3.6548 -0.0969 11 6 2.4472 -3.9494 -1.5472 12 6 1.1826 -4.1795 -2.3771 13 6 1.5709 -4.4748 -3.8272 14 6 2.4477 -5.7278 -3.8754 15 8 2.8108 -6.0032 -5.2298 16 6 3.7123 -5.4976 -3.0456 17 6 3.3239 -5.2024 -1.5955 18 6 -0.1387 -2.3892 -0.0121 19 6 -0.6957 -3.8025 -0.3187 20 6 -2.0998 -3.8015 0.3202 21 6 -2.0808 -2.7298 1.4242 22 6 -0.6653 -2.1165 1.4188 23 1 -0.4850 0.8401 -0.0004 24 1 2.9595 -3.5837 0.5131 25 1 1.4270 -4.4588 0.2805 26 1 3.0000 -3.1028 -1.9544 27 1 0.6298 -5.0261 -1.9698 28 1 0.5578 -3.2871 -2.3424 29 1 2.1240 -3.6284 -4.2348 30 1 0.6701 -4.6392 -4.4183 31 1 1.8946 -6.5740 -3.4679 32 1 2.0571 -6.1597 -5.8151 33 1 4.2653 -4.6512 -3.4531 34 1 4.3367 -6.3904 -3.0796 35 1 4.2249 -5.0389 -1.0041 36 1 2.7709 -6.0487 -1.1879 37 1 -0.5355 -1.6573 -0.7158 38 1 -0.0685 -4.5672 0.1395 39 1 -0.7664 -3.9602 -1.3949 40 1 -2.3140 -4.7790 0.7524 41 1 -2.8509 -3.5522 -0.4292 42 1 -2.8221 -1.9599 1.2101 43 1 -2.2866 -3.1870 2.3921 44 1 -0.7133 -1.0444 1.6097 45 1 -0.0342 -2.6071 2.1597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380112844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:59 Heat of formation + Delta-G solvation = -53.776402 kcal Electronic energy + Delta-G solvation = -22368.687914 eV Core-core repulsion = 19385.485410 eV Total energy + Delta-G solvation = -2983.202505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.42191 -38.99022 -36.81675 -35.51565 -33.33964 -31.73672 -30.61146 -29.09619 -28.41459 -26.61188 -24.07192 -23.60521 -22.18700 -21.02945 -20.67375 -19.92449 -18.59643 -18.10414 -16.88160 -16.66862 -16.02760 -15.87672 -15.32860 -15.28075 -14.95982 -14.62917 -14.39012 -13.87879 -13.48036 -13.28733 -13.14031 -13.02995 -12.90378 -12.80398 -12.59684 -12.18808 -11.96938 -11.92547 -11.88936 -11.70501 -11.56565 -11.44428 -11.28909 -11.17717 -11.03742 -10.92766 -10.76101 -10.48440 -10.19991 -8.62058 -7.52301 -5.02659 1.47842 1.48609 1.54075 2.57105 3.34569 3.43376 3.68480 3.86807 3.91700 4.14691 4.17647 4.23374 4.33806 4.35123 4.49450 4.58760 4.63625 4.65229 4.68928 4.73838 4.92503 5.03185 5.08167 5.09165 5.12418 5.15852 5.17998 5.24073 5.26846 5.29893 5.33461 5.39350 5.40935 5.45281 5.62618 5.65058 5.70276 5.71375 5.79021 6.18885 6.31480 6.58216 6.93194 7.37946 8.12340 8.45944 9.32757 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016313 B = 0.007103 C = 0.005601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.017461 B = 3941.237901 C = 4998.329198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.059 4.059 3 Si 0.956 3.044 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.287 1.287 7 C -0.236 4.236 8 H 0.065 0.935 9 N -0.609 5.609 10 C 0.146 3.854 11 C -0.099 4.099 12 C -0.098 4.098 13 C -0.145 4.145 14 C 0.111 3.889 15 O -0.587 6.587 16 C -0.109 4.109 17 C -0.101 4.101 18 C 0.205 3.795 19 C -0.150 4.150 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.120 4.120 23 H 0.238 0.762 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.392 0.608 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 -13.152 -4.569 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.252 4.252 3 Si 0.787 3.213 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.214 1.214 7 C -0.366 4.366 8 H 0.083 0.917 9 N -0.330 5.330 10 C 0.020 3.980 11 C -0.120 4.120 12 C -0.135 4.135 13 C -0.183 4.183 14 C 0.053 3.947 15 O -0.395 6.395 16 C -0.146 4.146 17 C -0.139 4.139 18 C 0.100 3.900 19 C -0.188 4.188 20 C -0.150 4.150 21 C -0.156 4.156 22 C -0.160 4.160 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.241 0.759 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -0.002 -12.922 -4.317 13.625 hybrid contribution 0.001 1.640 0.015 1.640 sum 0.000 -11.283 -4.303 12.075 Atomic orbital electron populations 1.70263 1.05088 1.23436 1.58487 1.25309 0.96427 0.99692 1.03758 0.85485 0.77338 0.80983 0.77455 1.21412 1.22302 1.21417 1.19477 0.90756 0.85184 1.41177 0.91671 1.44258 1.02237 1.01055 1.85413 1.21036 0.94669 0.88112 0.94143 1.21645 0.96112 0.96558 0.97673 1.21633 0.97311 1.00908 0.93697 1.22242 0.99869 0.98430 0.97773 1.21797 0.95303 0.95584 0.82029 1.86455 1.38769 1.93573 1.20743 1.21448 0.96775 1.01655 0.94747 1.21447 0.99635 0.97501 0.95357 1.21551 0.80842 0.92525 0.95096 1.23335 0.96303 0.98622 1.00498 1.22021 0.96991 0.98544 0.97480 1.22042 0.97407 0.97726 0.98405 1.23026 0.93956 1.00134 0.98853 0.95113 0.95507 0.91439 0.94682 0.90801 0.93296 0.93813 0.90773 0.91203 0.75861 0.93318 0.90639 0.91545 0.90396 0.90711 0.91448 0.90992 0.90887 0.92157 0.93500 0.92481 0.92500 0.96868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.94 7.31 21.65 0.16 -51.78 16 2 C -0.06 -3.25 5.39 84.86 0.46 -2.79 16 3 Si 0.96 45.86 29.55 68.60 2.03 47.88 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.24 -12.71 9.72 84.03 0.82 -11.89 16 8 H 0.07 3.49 7.83 -2.91 -0.02 3.47 16 9 N -0.61 -29.00 2.35 -670.73 -1.58 -30.57 16 10 C 0.15 5.63 4.87 86.38 0.42 6.05 16 11 C -0.10 -3.33 2.34 -10.79 -0.03 -3.36 16 12 C -0.10 -3.06 3.25 30.59 0.10 -2.96 16 13 C -0.15 -3.90 5.54 30.59 0.17 -3.73 16 14 C 0.11 2.62 3.47 30.60 0.11 2.72 16 15 O -0.59 -13.53 13.32 -148.98 -1.98 -15.51 16 16 C -0.11 -2.74 5.57 30.60 0.17 -2.57 16 17 C -0.10 -2.64 5.20 30.59 0.16 -2.48 16 18 C 0.21 9.43 1.90 46.31 0.09 9.52 16 19 C -0.15 -5.31 4.10 31.70 0.13 -5.18 16 20 C -0.11 -3.57 6.80 31.32 0.21 -3.36 16 21 C -0.12 -4.32 6.80 31.32 0.21 -4.11 16 22 C -0.12 -5.53 5.91 31.67 0.19 -5.35 16 23 H 0.24 13.39 8.31 -92.71 -0.77 12.62 16 24 H 0.03 1.06 8.10 -2.39 -0.02 1.04 16 25 H 0.07 2.36 5.31 -2.39 -0.01 2.35 16 26 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 2.03 6.69 -2.39 -0.02 2.01 16 28 H 0.05 1.88 5.76 -2.39 -0.01 1.87 16 29 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.39 5.57 9.08 -74.05 -0.67 4.90 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 4.08 5.90 -2.38 -0.01 4.06 16 38 H 0.07 2.25 5.31 -2.39 -0.01 2.24 16 39 H 0.07 2.41 5.08 -2.39 -0.01 2.40 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 45 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -60.93 324.02 2.12 -58.81 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.29 Total: 20.64 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 3.21 Total: -29.47 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -1.42 Total: -82.35 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.98 Total: -15.51 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -60.93 2.12 -58.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380112844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.030 kcal (2) G-P(sol) polarization free energy of solvation -60.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds