Wall clock time and date at job start Mon Mar 30 2020 06:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47143 * 2 1 4 4 C 1.53005 * 109.46875 * 119.99649 * 2 1 3 5 5 N 1.46904 * 109.47061 * 294.99797 * 4 2 1 6 6 C 1.46903 * 110.99752 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.47076 * 325.00314 * 6 5 4 8 8 C 1.52992 * 109.47221 * 85.00221 * 6 5 4 9 9 C 1.53002 * 109.46909 * 205.00119 * 6 5 4 10 10 C 1.50700 * 109.46989 * 65.00111 * 9 6 5 11 11 H 1.08000 * 120.00286 * 359.97438 * 10 9 6 12 12 C 1.37880 * 119.99967 * 179.97438 * 10 9 6 13 13 N 1.31513 * 120.00074 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00122 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47088 * 60.00192 * 14 12 10 16 16 H 1.48497 * 109.47331 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47492 * 300.00101 * 14 12 10 18 18 C 1.52995 * 109.47341 * 239.99588 * 2 1 3 19 19 C 1.50702 * 109.47096 * 65.00097 * 18 2 1 20 20 C 1.33381 * 125.20592 * 89.99839 * 19 18 2 21 21 C 1.38427 * 114.92374 * 179.97438 * 20 19 18 22 22 C 1.33387 * 114.91991 * 0.25034 * 21 20 19 23 23 S 1.75886 * 109.59194 * 359.63459 * 22 21 20 24 24 H 1.09003 * 109.46840 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47104 * 299.99930 * 1 2 3 26 26 H 1.08999 * 109.46998 * 60.00417 * 1 2 3 27 27 H 1.08998 * 109.47479 * 55.00095 * 4 2 1 28 28 H 1.08997 * 109.46757 * 175.00373 * 4 2 1 29 29 H 1.00898 * 110.99649 * 56.05070 * 5 4 2 30 30 H 1.08996 * 109.47406 * 179.97438 * 8 6 5 31 31 H 1.09005 * 109.47475 * 300.00067 * 8 6 5 32 32 H 1.09008 * 109.47182 * 59.99684 * 8 6 5 33 33 H 1.09000 * 109.46959 * 184.99466 * 9 6 5 34 34 H 1.08995 * 109.47054 * 305.00167 * 9 6 5 35 35 H 0.97000 * 120.00073 * 180.02562 * 13 12 10 36 36 H 1.08996 * 109.46856 * 305.00042 * 18 2 1 37 37 H 1.08996 * 109.47050 * 185.00185 * 18 2 1 38 38 H 1.08002 * 122.53744 * 359.94345 * 20 19 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.20431 * 179.75072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6514 0.0376 2.4457 6 6 2.1257 -0.6263 3.6673 7 1 2.0824 -1.7072 3.5336 8 6 3.5692 -0.2048 3.9491 9 6 1.2371 -0.2221 4.8453 10 6 -0.1590 -0.7447 4.6239 11 1 -0.3895 -1.3084 3.7320 12 6 -1.1420 -0.5032 5.5601 13 7 -0.8613 0.1828 6.6465 14 14 -2.8726 -1.1503 5.2854 15 1 -2.8361 -2.6310 5.1774 16 1 -3.7351 -0.7581 6.4288 17 1 -3.4227 -0.5760 4.0313 18 6 2.0401 -0.7213 -1.2491 19 6 1.6414 0.0569 -2.4765 20 6 2.3692 1.0175 -3.0480 21 6 1.7981 1.5928 -4.1701 22 6 0.6040 1.1028 -4.5068 23 16 0.1455 -0.1631 -3.3751 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7197 1.2953 28 1 3.1263 -0.7994 1.2057 29 1 0.6528 0.1794 2.4753 30 1 3.9210 -0.6970 4.8557 31 1 4.2023 -0.4927 3.1099 32 1 3.6125 0.8762 4.0828 33 1 1.6408 -0.6430 5.7662 34 1 1.2100 0.8647 4.9238 35 1 -1.5528 0.3524 7.3052 36 1 1.6054 -1.7198 -1.2949 37 1 3.1263 -0.7995 -1.2054 38 1 3.3311 1.3238 -2.6640 39 1 2.2806 2.3817 -4.7279 40 1 0.0105 1.4317 -5.3470 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381012840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:58 Heat of formation + Delta-G solvation = 3.038710 kcal Electronic energy + Delta-G solvation = -17942.203974 eV Core-core repulsion = 15268.384934 eV Total energy + Delta-G solvation = -2673.819040 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.39698 -37.14504 -35.04218 -32.57873 -30.82680 -28.82723 -27.39092 -26.57514 -24.91717 -23.19973 -22.50324 -20.04931 -19.37057 -19.02578 -17.18553 -16.33357 -15.61276 -15.41572 -14.81536 -14.55285 -14.13928 -13.76576 -13.13520 -12.94972 -12.87133 -12.60557 -12.42127 -12.16142 -11.83194 -11.63753 -11.58278 -11.23842 -11.19040 -10.91669 -10.81915 -10.69240 -10.56791 -10.45821 -10.34618 -10.10247 -9.21290 -9.05869 -8.67061 -8.50634 -8.38587 -7.59764 -6.01952 -4.05125 0.92539 1.56053 1.93686 2.66634 3.31100 3.36243 3.37988 4.43591 4.60631 4.91696 4.94432 5.04660 5.25128 5.29232 5.39497 5.45643 5.51354 5.66526 5.75192 5.88252 5.97677 6.02712 6.04627 6.13162 6.21689 6.25974 6.28178 6.33670 6.40039 6.51961 6.56740 6.62461 6.95849 6.98082 7.55719 7.65028 7.97913 8.10142 8.32177 8.39542 9.00927 9.58972 11.08964 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.004148 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.562325 B = 6749.070030 C = 7715.104650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 H 0.081 0.919 4 C 0.065 3.935 5 N -0.684 5.684 6 C 0.087 3.913 7 H 0.028 0.972 8 C -0.134 4.134 9 C 0.020 3.980 10 C -0.524 4.524 11 H 0.051 0.949 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.047 4.047 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.131 4.131 22 C -0.227 4.227 23 S 0.095 5.905 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.023 0.977 28 H 0.062 0.938 29 H 0.355 0.645 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.021 0.979 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.444 0.141 -20.049 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.102 4.102 3 H 0.099 0.901 4 C -0.065 4.065 5 N -0.319 5.319 6 C -0.023 4.023 7 H 0.046 0.954 8 C -0.192 4.192 9 C -0.017 4.017 10 C -0.563 4.563 11 H 0.069 0.931 12 C -0.140 4.140 13 N -0.530 5.530 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.087 4.087 19 C -0.272 4.272 20 C -0.179 4.179 21 C -0.162 4.162 22 C -0.362 4.362 23 S 0.359 5.641 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.177 0.823 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.628 -0.303 -19.777 20.313 hybrid contribution -0.456 -0.119 -0.259 0.537 sum 4.172 -0.422 -20.035 20.470 Atomic orbital electron populations 1.21985 0.95150 1.01834 1.02439 1.21139 0.96190 1.00420 0.92416 0.90104 1.21950 0.99616 0.94627 0.90335 1.60587 1.21533 1.49006 1.00727 1.21603 0.94395 0.94876 0.91383 0.95423 1.21789 0.96624 1.01506 0.99327 1.19275 0.93088 0.97527 0.91790 1.21137 0.94935 1.34596 1.05588 0.93104 1.24978 0.98749 0.95107 0.95190 1.69948 1.33678 1.39671 1.09707 0.86718 0.84609 0.79300 0.77751 1.20357 1.21250 1.20160 1.20275 1.01418 0.97560 0.89431 1.24552 0.97759 1.02971 1.01874 1.20123 1.02161 0.98282 0.97322 1.20153 0.95570 1.02132 0.98313 1.25591 1.01405 1.03892 1.05311 1.84384 1.20876 1.37122 1.21749 0.93037 0.91372 0.92606 0.95928 0.91955 0.82335 0.93417 0.94556 0.92691 0.96113 0.95632 0.92892 0.90867 0.89938 0.84364 0.84602 0.82266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 8.69 37.16 0.32 -1.90 16 2 C -0.08 -1.10 2.59 -90.62 -0.23 -1.34 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.06 1.01 4.94 -3.82 -0.02 0.99 16 5 N -0.68 -13.10 6.31 -106.72 -0.67 -13.77 16 6 C 0.09 1.82 2.59 -67.71 -0.18 1.64 16 7 H 0.03 0.60 7.80 -51.93 -0.41 0.19 16 8 C -0.13 -2.44 9.41 37.15 0.35 -2.09 16 9 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 10 C -0.52 -14.42 8.12 -34.44 -0.28 -14.70 16 11 H 0.05 1.36 7.49 -52.49 -0.39 0.96 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 14 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.05 -0.53 5.18 -27.88 -0.14 -0.67 16 19 C -0.15 -1.74 5.08 -36.00 -0.18 -1.92 16 20 C -0.15 -1.59 10.05 -41.21 -0.41 -2.00 16 21 C -0.13 -1.28 10.18 -41.21 -0.42 -1.70 16 22 C -0.23 -2.20 11.23 29.04 0.33 -1.87 16 23 S 0.10 1.03 21.89 -107.50 -2.35 -1.33 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.08 6.68 -51.93 -0.35 0.74 16 26 H 0.05 0.74 6.17 -51.93 -0.32 0.42 16 27 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 28 H 0.06 0.92 7.43 -51.93 -0.39 0.53 16 29 H 0.35 7.40 5.46 -39.29 -0.21 7.18 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 32 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 334.60 15.07 5.04 5.04 Total: -1.00 -29.10 334.60 -10.02 -39.12 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.66 Total: 3.86 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -1.10 Total: -23.52 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.06 Total: -39.59 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.35 Total: -1.33 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.10 -10.02 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381012840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.159 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds