Wall clock time and date at job start Mon Mar 30 2020 06:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47143 * 2 1 4 4 C 1.53005 * 109.46875 * 119.99649 * 2 1 3 5 5 N 1.46904 * 109.47061 * 294.99797 * 4 2 1 6 6 C 1.46903 * 110.99752 * 180.02562 * 5 4 2 7 7 H 1.09001 * 109.47076 * 325.00314 * 6 5 4 8 8 C 1.52992 * 109.47221 * 85.00221 * 6 5 4 9 9 C 1.53002 * 109.46909 * 205.00119 * 6 5 4 10 10 C 1.50700 * 109.46989 * 65.00111 * 9 6 5 11 11 H 1.08000 * 120.00286 * 359.97438 * 10 9 6 12 12 C 1.37880 * 119.99967 * 179.97438 * 10 9 6 13 13 N 1.31513 * 120.00074 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00122 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47088 * 60.00192 * 14 12 10 16 16 H 1.48497 * 109.47331 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47492 * 300.00101 * 14 12 10 18 18 C 1.52995 * 109.47341 * 239.99588 * 2 1 3 19 19 C 1.50702 * 109.47096 * 65.00097 * 18 2 1 20 20 C 1.33381 * 125.20592 * 89.99839 * 19 18 2 21 21 C 1.38427 * 114.92374 * 179.97438 * 20 19 18 22 22 C 1.33387 * 114.91991 * 0.25034 * 21 20 19 23 23 S 1.75886 * 109.59194 * 359.63459 * 22 21 20 24 24 H 1.09003 * 109.46840 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47104 * 299.99930 * 1 2 3 26 26 H 1.08999 * 109.46998 * 60.00417 * 1 2 3 27 27 H 1.08998 * 109.47479 * 55.00095 * 4 2 1 28 28 H 1.08997 * 109.46757 * 175.00373 * 4 2 1 29 29 H 1.00898 * 110.99649 * 56.05070 * 5 4 2 30 30 H 1.08996 * 109.47406 * 179.97438 * 8 6 5 31 31 H 1.09005 * 109.47475 * 300.00067 * 8 6 5 32 32 H 1.09008 * 109.47182 * 59.99684 * 8 6 5 33 33 H 1.09000 * 109.46959 * 184.99466 * 9 6 5 34 34 H 1.08995 * 109.47054 * 305.00167 * 9 6 5 35 35 H 0.97000 * 120.00073 * 180.02562 * 13 12 10 36 36 H 1.08996 * 109.46856 * 305.00042 * 18 2 1 37 37 H 1.08996 * 109.47050 * 185.00185 * 18 2 1 38 38 H 1.08002 * 122.53744 * 359.94345 * 20 19 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.20431 * 179.75072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6514 0.0376 2.4457 6 6 2.1257 -0.6263 3.6673 7 1 2.0824 -1.7072 3.5336 8 6 3.5692 -0.2048 3.9491 9 6 1.2371 -0.2221 4.8453 10 6 -0.1590 -0.7447 4.6239 11 1 -0.3895 -1.3084 3.7320 12 6 -1.1420 -0.5032 5.5601 13 7 -0.8613 0.1828 6.6465 14 14 -2.8726 -1.1503 5.2854 15 1 -2.8361 -2.6310 5.1774 16 1 -3.7351 -0.7581 6.4288 17 1 -3.4227 -0.5760 4.0313 18 6 2.0401 -0.7213 -1.2491 19 6 1.6414 0.0569 -2.4765 20 6 2.3692 1.0175 -3.0480 21 6 1.7981 1.5928 -4.1701 22 6 0.6040 1.1028 -4.5068 23 16 0.1455 -0.1631 -3.3751 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7197 1.2953 28 1 3.1263 -0.7994 1.2057 29 1 0.6528 0.1794 2.4753 30 1 3.9210 -0.6970 4.8557 31 1 4.2023 -0.4927 3.1099 32 1 3.6125 0.8762 4.0828 33 1 1.6408 -0.6430 5.7662 34 1 1.2100 0.8647 4.9238 35 1 -1.5528 0.3524 7.3052 36 1 1.6054 -1.7198 -1.2949 37 1 3.1263 -0.7995 -1.2054 38 1 3.3311 1.3238 -2.6640 39 1 2.2806 2.3817 -4.7279 40 1 0.0105 1.4317 -5.3470 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381012840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:58 Heat of formation + Delta-G solvation = -12.543450 kcal Electronic energy + Delta-G solvation = -17942.879668 eV Core-core repulsion = 15268.384934 eV Total energy + Delta-G solvation = -2674.494733 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.37773 -38.39113 -36.41311 -34.57633 -32.08441 -30.10672 -29.24364 -27.58498 -26.13442 -24.91415 -23.62945 -21.23930 -20.94432 -19.86931 -18.50748 -18.02820 -16.97020 -16.42362 -16.36797 -16.08068 -15.45244 -14.99100 -14.60554 -14.15284 -13.89770 -13.65209 -13.53902 -13.42942 -13.31638 -13.17267 -13.11700 -12.65203 -12.60565 -12.51157 -12.40931 -12.08717 -11.98088 -11.65213 -11.62939 -11.45514 -11.17821 -10.97278 -10.57190 -9.48140 -9.31342 -9.14101 -8.19494 -6.30067 0.14396 0.78054 1.16759 1.38977 1.40840 1.48542 1.90498 2.39765 3.12060 3.44097 3.84386 3.98353 4.15931 4.26341 4.31619 4.34732 4.50300 4.60821 4.66022 4.72677 4.75748 4.80341 4.87388 4.88133 5.01783 5.05861 5.09239 5.23285 5.26684 5.34502 5.36160 5.41493 5.47854 5.52769 5.57745 5.67780 5.84569 6.21208 6.46453 6.69010 6.85078 7.38693 8.92041 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.004148 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.562325 B = 6749.070030 C = 7715.104650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.072 4.072 3 H 0.074 0.926 4 C 0.066 3.934 5 N -0.687 5.687 6 C 0.094 3.906 7 H 0.023 0.977 8 C -0.127 4.127 9 C 0.027 3.973 10 C -0.535 4.535 11 H 0.056 0.944 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.957 3.043 15 H -0.270 1.270 16 H -0.284 1.284 17 H -0.266 1.266 18 C -0.039 4.039 19 C -0.172 4.172 20 C -0.151 4.151 21 C -0.140 4.140 22 C -0.224 4.224 23 S 0.071 5.929 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.018 0.982 28 H 0.078 0.922 29 H 0.342 0.658 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.048 0.952 33 H -0.006 1.006 34 H -0.004 1.004 35 H 0.263 0.737 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.687 -0.195 -22.167 22.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.091 4.091 3 H 0.093 0.907 4 C -0.063 4.063 5 N -0.320 5.320 6 C -0.016 4.016 7 H 0.041 0.959 8 C -0.185 4.185 9 C -0.010 4.010 10 C -0.573 4.573 11 H 0.074 0.926 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.782 3.218 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.079 4.079 19 C -0.289 4.289 20 C -0.181 4.181 21 C -0.170 4.170 22 C -0.359 4.359 23 S 0.335 5.665 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.096 0.904 29 H 0.163 0.837 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.013 0.987 34 H 0.014 0.986 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.168 0.832 39 H 0.176 0.824 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.889 -0.647 -21.915 22.463 hybrid contribution -0.500 0.024 0.362 0.618 sum 4.389 -0.623 -21.552 22.003 Atomic orbital electron populations 1.21949 0.95924 1.01549 1.01691 1.21009 0.95423 1.00079 0.92579 0.90725 1.22045 1.00546 0.94150 0.89590 1.60639 1.20590 1.49532 1.01286 1.21430 0.95122 0.94610 0.90403 0.95879 1.21702 0.94975 1.01096 1.00687 1.19139 0.93690 0.95287 0.92906 1.21485 0.95883 1.34288 1.05628 0.92577 1.25869 1.03171 0.95315 0.94868 1.70085 1.35115 1.41100 1.10728 0.85622 0.79319 0.78932 0.77929 1.19469 1.20961 1.19106 1.20170 1.02251 0.97240 0.88234 1.24571 0.98155 1.03816 1.02337 1.20410 1.02557 0.97735 0.97368 1.20447 0.95679 1.02641 0.98271 1.25909 1.01601 1.02961 1.05400 1.84449 1.21271 1.38158 1.22665 0.93092 0.93634 0.91752 0.96346 0.90372 0.83741 0.93030 0.91781 0.93302 0.98739 0.98553 0.92812 0.90684 0.88434 0.83184 0.82408 0.80159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 8.69 71.98 0.63 -3.65 16 2 C -0.07 -1.83 2.59 -10.79 -0.03 -1.86 16 3 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 4 C 0.07 1.96 4.94 86.30 0.43 2.39 16 5 N -0.69 -26.12 6.31 -491.56 -3.10 -29.22 16 6 C 0.09 3.93 2.59 44.91 0.12 4.05 16 7 H 0.02 0.99 7.80 -2.39 -0.02 0.97 16 8 C -0.13 -4.46 9.41 71.98 0.68 -3.78 16 9 C 0.03 1.43 4.57 29.85 0.14 1.57 16 10 C -0.53 -29.87 8.12 25.60 0.21 -29.67 16 11 H 0.06 3.01 7.49 -2.91 -0.02 2.99 16 12 C 0.01 0.35 5.46 84.66 0.46 0.81 16 13 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 14 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 C -0.04 -0.81 5.18 29.85 0.15 -0.65 16 19 C -0.17 -3.56 5.08 24.59 0.12 -3.44 16 20 C -0.15 -2.86 10.05 21.22 0.21 -2.65 16 21 C -0.14 -2.38 10.18 21.22 0.22 -2.17 16 22 C -0.22 -3.83 11.23 66.72 0.75 -3.08 16 23 S 0.07 1.44 21.89 -56.49 -1.24 0.20 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.46 6.68 -2.39 -0.02 1.44 16 26 H 0.06 1.66 6.17 -2.39 -0.01 1.65 16 27 H 0.02 0.57 8.06 -2.39 -0.02 0.55 16 28 H 0.08 2.09 7.43 -2.39 -0.02 2.07 16 29 H 0.34 14.46 5.46 -89.70 -0.49 13.97 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.89 7.45 -2.38 -0.02 1.87 16 32 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 33 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 40 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -62.66 334.60 2.57 -60.10 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.51 Total: 21.18 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 4.08 Total: -42.12 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -2.82 Total: -85.53 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -1.24 Total: 0.20 kcal Total: -62.66 2.57 -60.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381012840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.555 kcal (2) G-P(sol) polarization free energy of solvation -62.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds