Wall clock time and date at job start Mon Mar 30 2020 06:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47263 * 2 1 4 4 C 1.53001 * 109.46587 * 240.00468 * 2 1 3 5 5 C 1.50701 * 109.46892 * 175.00176 * 4 2 1 6 6 H 1.08004 * 120.00176 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99908 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00013 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00219 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47263 * 90.00041 * 9 7 5 11 11 H 1.48502 * 109.47252 * 210.00009 * 9 7 5 12 12 H 1.48502 * 109.47181 * 330.00085 * 9 7 5 13 13 N 1.46900 * 109.47069 * 120.00697 * 2 1 3 14 14 C 1.46900 * 110.99829 * 274.99449 * 13 2 1 15 15 C 1.52999 * 109.47138 * 180.02562 * 14 13 2 16 16 H 1.08998 * 109.47423 * 304.99879 * 15 14 13 17 17 C 1.53003 * 109.47133 * 65.00272 * 15 14 13 18 18 C 1.53005 * 109.47037 * 184.99781 * 15 14 13 19 19 C 1.50702 * 109.46948 * 175.00137 * 18 15 14 20 20 C 1.33381 * 125.20534 * 90.00166 * 19 18 15 21 21 C 1.38427 * 114.92374 * 180.02562 * 20 19 18 22 22 C 1.33387 * 114.91991 * 0.25034 * 21 20 19 23 23 S 1.75886 * 109.59194 * 359.63459 * 22 21 20 24 24 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.46605 * 299.99521 * 1 2 3 26 26 H 1.08991 * 109.47293 * 59.98992 * 1 2 3 27 27 H 1.09002 * 109.47231 * 294.99643 * 4 2 1 28 28 H 1.08997 * 109.47501 * 54.99778 * 4 2 1 29 29 H 0.97002 * 120.00013 * 179.97438 * 8 7 5 30 30 H 1.00904 * 111.00227 * 151.04647 * 13 2 1 31 31 H 1.08996 * 109.47061 * 60.00139 * 14 13 2 32 32 H 1.09004 * 109.47095 * 300.00178 * 14 13 2 33 33 H 1.09004 * 109.46791 * 300.00047 * 17 15 14 34 34 H 1.09003 * 109.46943 * 59.99847 * 17 15 14 35 35 H 1.09000 * 109.47026 * 179.97438 * 17 15 14 36 36 H 1.09000 * 109.46850 * 55.00378 * 18 15 14 37 37 H 1.08995 * 109.47365 * 295.00386 * 18 15 14 38 38 H 1.08001 * 122.53741 * 0.05729 * 20 19 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.20431 * 179.75072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5418 -0.6149 -1.3129 6 1 4.0789 -0.0855 -0.5397 7 6 4.2302 -1.1935 -2.3580 8 7 5.5410 -1.1003 -2.4137 9 14 3.3014 -2.1096 -3.6949 10 1 2.9397 -1.1654 -4.7824 11 1 4.1602 -3.1901 -4.2428 12 1 2.0658 -2.7018 -3.1222 13 7 2.0197 -0.6926 1.1993 14 6 2.0826 0.2224 2.3469 15 6 2.5963 -0.5332 3.5741 16 1 1.9711 -1.4085 3.7500 17 6 4.0400 -0.9781 3.3316 18 6 2.5442 0.3849 4.7970 19 6 2.9332 -0.3942 6.0269 20 6 4.1755 -0.5211 6.4958 21 6 4.2905 -1.2870 7.6431 22 6 3.1423 -1.7865 8.1029 23 16 1.8187 -1.2760 7.0632 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 1.7516 -1.7715 -1.2057 28 1 1.6053 -0.2617 -2.1370 29 1 6.0253 -1.5076 -3.1488 30 1 2.9174 -1.1207 1.0286 31 1 1.0873 0.6161 2.5525 32 1 2.7590 1.0460 2.1182 33 1 4.0772 -1.6321 2.4604 34 1 4.6653 -0.1027 3.1558 35 1 4.4062 -1.5160 4.2061 36 1 1.5326 0.7726 4.9173 37 1 3.2372 1.2147 4.6582 38 1 5.0270 -0.0606 6.0169 39 1 5.2387 -1.4702 8.1266 40 1 3.0407 -2.4077 8.9805 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381012843.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:01 Heat of formation + Delta-G solvation = 6.212962 kcal Electronic energy + Delta-G solvation = -17947.358994 eV Core-core repulsion = 15273.677599 eV Total energy + Delta-G solvation = -2673.681394 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.45964 -37.15306 -35.06094 -32.51936 -30.93454 -28.87159 -27.82470 -26.82913 -24.79827 -23.05556 -22.26246 -19.91357 -19.33031 -19.23503 -17.08561 -16.80782 -15.75308 -15.30341 -14.76571 -14.53162 -14.11482 -13.76067 -13.07655 -12.96407 -12.69142 -12.62997 -12.51788 -12.21783 -12.10032 -11.80668 -11.64786 -11.51675 -11.22748 -10.97228 -10.76066 -10.74908 -10.51672 -10.41592 -10.23041 -9.74387 -9.43055 -9.20476 -8.64794 -8.56004 -8.53346 -7.66141 -6.07192 -4.05555 0.94532 1.57502 1.94593 2.69279 3.30590 3.38489 3.43564 4.44331 4.61062 4.91163 4.98350 5.02215 5.24248 5.27726 5.41610 5.49243 5.55790 5.66195 5.77114 5.83387 5.93324 6.01384 6.05471 6.14349 6.16591 6.22674 6.25882 6.32770 6.43520 6.45319 6.56896 6.63375 6.74856 6.81216 7.17916 7.32414 7.75998 7.94397 8.27700 8.48293 8.94682 9.55761 11.05729 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.028064 B = 0.003790 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.474267 B = 7385.717273 C = 7965.033109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.096 3.904 3 H 0.034 0.966 4 C -0.017 4.017 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.880 3.120 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.685 5.685 14 C 0.065 3.935 15 C -0.082 4.082 16 H 0.078 0.922 17 C -0.152 4.152 18 C -0.047 4.047 19 C -0.153 4.153 20 C -0.147 4.147 21 C -0.130 4.130 22 C -0.224 4.224 23 S 0.089 5.911 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.025 0.975 28 H 0.016 0.984 29 H 0.263 0.737 30 H 0.358 0.642 31 H 0.061 0.939 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.168 1.115 18.742 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.014 4.014 3 H 0.052 0.948 4 C -0.055 4.055 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.320 5.320 14 C -0.065 4.065 15 C -0.101 4.101 16 H 0.096 0.904 17 C -0.209 4.209 18 C -0.087 4.087 19 C -0.271 4.271 20 C -0.176 4.176 21 C -0.161 4.161 22 C -0.360 4.360 23 S 0.352 5.648 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.181 0.819 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.173 0.559 18.810 20.516 hybrid contribution 2.054 0.244 -0.925 2.266 sum -6.119 0.803 17.885 18.919 Atomic orbital electron populations 1.21828 0.96729 1.01307 0.99689 1.21376 0.93170 0.96012 0.90840 0.94826 1.19772 0.96966 0.96256 0.92513 1.21082 0.89911 1.35218 1.09902 0.91284 1.25005 0.94686 0.95675 0.97867 1.69920 1.06588 1.45237 1.32298 0.86769 0.80334 0.79914 0.82223 1.20418 1.21454 1.18843 1.60606 1.35215 1.32003 1.04172 1.21944 0.99328 0.94143 0.91081 1.21126 0.97879 0.98346 0.92773 0.90385 1.21907 0.95358 1.01597 1.02025 1.20268 1.01992 0.96927 0.89484 1.24541 0.96164 1.04867 1.01491 1.20150 0.97174 1.02738 0.97570 1.20176 0.98808 0.99737 0.97379 1.25544 0.96031 1.08879 1.05515 1.84299 1.11460 1.48453 1.20622 0.92691 0.94154 0.93400 0.95662 0.96572 0.92749 0.81937 0.92037 0.95641 0.91527 0.92923 0.92699 0.90846 0.89967 0.84305 0.84564 0.82259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.41 37.16 0.35 -1.99 16 2 C 0.10 1.92 2.59 -67.71 -0.18 1.75 16 3 H 0.03 0.71 7.80 -51.93 -0.40 0.30 16 4 C -0.02 -0.41 3.64 -27.88 -0.10 -0.52 16 5 C -0.52 -14.47 8.67 -34.44 -0.30 -14.77 16 6 H 0.07 2.04 7.73 -52.48 -0.41 1.64 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 9 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 13 N -0.68 -12.92 6.31 -106.72 -0.67 -13.59 16 14 C 0.07 1.01 4.94 -3.82 -0.02 1.00 16 15 C -0.08 -1.11 2.59 -90.62 -0.23 -1.35 16 16 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.15 -2.19 8.66 37.16 0.32 -1.87 16 18 C -0.05 -0.53 5.18 -27.88 -0.14 -0.68 16 19 C -0.15 -1.75 5.27 -36.00 -0.19 -1.94 16 20 C -0.15 -1.61 8.60 -41.21 -0.35 -1.97 16 21 C -0.13 -1.31 10.18 -41.21 -0.42 -1.72 16 22 C -0.22 -2.18 11.23 29.04 0.33 -1.85 16 23 S 0.09 0.94 23.33 -107.50 -2.51 -1.57 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.61 7.45 -51.92 -0.39 0.23 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 28 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.36 7.49 5.46 -39.29 -0.21 7.28 16 31 H 0.06 0.90 7.44 -51.93 -0.39 0.51 16 32 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 33 H 0.07 1.10 6.68 -51.93 -0.35 0.75 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.73 6.39 -51.93 -0.33 0.40 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 331.36 15.07 4.99 4.99 Total: -1.00 -29.32 331.36 -9.75 -39.07 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.63 Total: 4.69 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -1.04 Total: -24.02 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.10 Total: -40.17 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.32 -9.75 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381012843.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.285 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds