Wall clock time and date at job start Mon Mar 30 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47263 * 2 1 4 4 C 1.53001 * 109.46587 * 240.00468 * 2 1 3 5 5 C 1.50701 * 109.46892 * 175.00176 * 4 2 1 6 6 H 1.08004 * 120.00176 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99908 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00013 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00219 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47263 * 90.00041 * 9 7 5 11 11 H 1.48502 * 109.47252 * 210.00009 * 9 7 5 12 12 H 1.48502 * 109.47181 * 330.00085 * 9 7 5 13 13 N 1.46900 * 109.47069 * 120.00697 * 2 1 3 14 14 C 1.46900 * 110.99829 * 274.99449 * 13 2 1 15 15 C 1.52999 * 109.47138 * 180.02562 * 14 13 2 16 16 H 1.08998 * 109.47423 * 304.99879 * 15 14 13 17 17 C 1.53003 * 109.47133 * 65.00272 * 15 14 13 18 18 C 1.53005 * 109.47037 * 184.99781 * 15 14 13 19 19 C 1.50702 * 109.46948 * 175.00137 * 18 15 14 20 20 C 1.33381 * 125.20534 * 90.00166 * 19 18 15 21 21 C 1.38427 * 114.92374 * 180.02562 * 20 19 18 22 22 C 1.33387 * 114.91991 * 0.25034 * 21 20 19 23 23 S 1.75886 * 109.59194 * 359.63459 * 22 21 20 24 24 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.46605 * 299.99521 * 1 2 3 26 26 H 1.08991 * 109.47293 * 59.98992 * 1 2 3 27 27 H 1.09002 * 109.47231 * 294.99643 * 4 2 1 28 28 H 1.08997 * 109.47501 * 54.99778 * 4 2 1 29 29 H 0.97002 * 120.00013 * 179.97438 * 8 7 5 30 30 H 1.00904 * 111.00227 * 151.04647 * 13 2 1 31 31 H 1.08996 * 109.47061 * 60.00139 * 14 13 2 32 32 H 1.09004 * 109.47095 * 300.00178 * 14 13 2 33 33 H 1.09004 * 109.46791 * 300.00047 * 17 15 14 34 34 H 1.09003 * 109.46943 * 59.99847 * 17 15 14 35 35 H 1.09000 * 109.47026 * 179.97438 * 17 15 14 36 36 H 1.09000 * 109.46850 * 55.00378 * 18 15 14 37 37 H 1.08995 * 109.47365 * 295.00386 * 18 15 14 38 38 H 1.08001 * 122.53741 * 0.05729 * 20 19 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.20431 * 179.75072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5418 -0.6149 -1.3129 6 1 4.0789 -0.0855 -0.5397 7 6 4.2302 -1.1935 -2.3580 8 7 5.5410 -1.1003 -2.4137 9 14 3.3014 -2.1096 -3.6949 10 1 2.9397 -1.1654 -4.7824 11 1 4.1602 -3.1901 -4.2428 12 1 2.0658 -2.7018 -3.1222 13 7 2.0197 -0.6926 1.1993 14 6 2.0826 0.2224 2.3469 15 6 2.5963 -0.5332 3.5741 16 1 1.9711 -1.4085 3.7500 17 6 4.0400 -0.9781 3.3316 18 6 2.5442 0.3849 4.7970 19 6 2.9332 -0.3942 6.0269 20 6 4.1755 -0.5211 6.4958 21 6 4.2905 -1.2870 7.6431 22 6 3.1423 -1.7865 8.1029 23 16 1.8187 -1.2760 7.0632 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 1.7516 -1.7715 -1.2057 28 1 1.6053 -0.2617 -2.1370 29 1 6.0253 -1.5076 -3.1488 30 1 2.9174 -1.1207 1.0286 31 1 1.0873 0.6161 2.5525 32 1 2.7590 1.0460 2.1182 33 1 4.0772 -1.6321 2.4604 34 1 4.6653 -0.1027 3.1558 35 1 4.4062 -1.5160 4.2061 36 1 1.5326 0.7726 4.9173 37 1 3.2372 1.2147 4.6582 38 1 5.0270 -0.0606 6.0169 39 1 5.2387 -1.4702 8.1266 40 1 3.0407 -2.4077 8.9805 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381012843.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:00 Heat of formation + Delta-G solvation = -10.165295 kcal Electronic energy + Delta-G solvation = -17948.069208 eV Core-core repulsion = 15273.677599 eV Total energy + Delta-G solvation = -2674.391609 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.46470 -38.41011 -36.38787 -34.55206 -32.24203 -30.24383 -29.45921 -27.86380 -26.02725 -24.51249 -23.58606 -21.20887 -20.82691 -20.07241 -18.96149 -17.92919 -16.95429 -16.50842 -16.36477 -15.95702 -15.54903 -14.95461 -14.62768 -14.19892 -13.96932 -13.86840 -13.61404 -13.50764 -13.39441 -13.31237 -13.10635 -12.71790 -12.55847 -12.38422 -12.28319 -11.97083 -11.78111 -11.72033 -11.53706 -11.52142 -11.23660 -11.13841 -10.75793 -9.48022 -9.34049 -9.18509 -8.28175 -6.31189 0.13730 0.77674 1.15315 1.36060 1.38650 1.50519 1.89096 2.37112 3.05773 3.41897 3.83567 3.95566 4.12415 4.24173 4.28575 4.29861 4.52971 4.56067 4.66594 4.70326 4.71232 4.77945 4.85329 4.86520 4.98852 5.04739 5.08446 5.13288 5.22615 5.28120 5.30636 5.41856 5.43039 5.46014 5.53840 5.65355 5.68863 6.24621 6.41570 6.62373 6.75211 7.33303 8.87829 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.028064 B = 0.003790 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.474267 B = 7385.717273 C = 7965.033109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.096 3.904 3 H 0.020 0.980 4 C -0.014 4.014 5 C -0.523 4.523 6 H 0.033 0.967 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.249 1.249 13 N -0.687 5.687 14 C 0.066 3.934 15 C -0.071 4.071 16 H 0.072 0.928 17 C -0.146 4.146 18 C -0.039 4.039 19 C -0.172 4.172 20 C -0.152 4.152 21 C -0.142 4.142 22 C -0.220 4.220 23 S 0.082 5.918 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.023 0.977 28 H 0.022 0.978 29 H 0.265 0.735 30 H 0.342 0.658 31 H 0.079 0.921 32 H 0.014 0.986 33 H 0.039 0.961 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 0.763 19.564 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.014 4.014 3 H 0.038 0.962 4 C -0.051 4.051 5 C -0.561 4.561 6 H 0.052 0.948 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.173 1.173 13 N -0.320 5.320 14 C -0.063 4.063 15 C -0.090 4.090 16 H 0.091 0.909 17 C -0.203 4.203 18 C -0.079 4.079 19 C -0.289 4.289 20 C -0.182 4.182 21 C -0.173 4.173 22 C -0.355 4.355 23 S 0.345 5.655 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.097 0.903 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.160 0.840 39 H 0.174 0.826 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.989 0.220 19.649 22.043 hybrid contribution 2.683 0.386 -1.081 2.918 sum -7.307 0.607 18.568 19.963 Atomic orbital electron populations 1.21735 0.93688 1.01874 1.01344 1.21350 0.95501 0.94676 0.89872 0.96191 1.19724 0.94159 0.96574 0.94681 1.21343 0.92095 1.34040 1.08671 0.94831 1.25918 0.95479 0.96835 1.00579 1.70065 1.08436 1.46896 1.33491 0.85702 0.79350 0.78670 0.79160 1.19384 1.21237 1.17255 1.60715 1.34089 1.32611 1.04610 1.22028 1.00155 0.93494 0.90635 1.20994 0.96682 0.98368 0.92960 0.90933 1.21839 0.96298 1.00946 1.01221 1.20156 1.02874 0.96438 0.88431 1.24556 0.96649 1.05781 1.01930 1.20367 0.97200 1.02650 0.97953 1.20421 0.99902 0.99680 0.97253 1.25889 0.95365 1.08458 1.05792 1.84292 1.11902 1.48464 1.20855 0.92605 0.92121 0.92209 0.95915 0.95997 0.92639 0.83780 0.90280 0.96735 0.94219 0.93376 0.91611 0.89705 0.89575 0.84009 0.82641 0.79937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 9.41 71.98 0.68 -3.37 16 2 C 0.10 3.79 2.59 44.92 0.12 3.91 16 3 H 0.02 0.84 7.80 -2.39 -0.02 0.82 16 4 C -0.01 -0.64 3.64 29.85 0.11 -0.53 16 5 C -0.52 -29.59 8.67 25.60 0.22 -29.36 16 6 H 0.03 2.08 7.73 -2.91 -0.02 2.06 16 7 C 0.01 0.52 5.47 84.65 0.46 0.98 16 8 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 9 Si 0.95 44.49 27.47 68.60 1.88 46.38 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 13 N -0.69 -25.91 6.31 -491.57 -3.10 -29.01 16 14 C 0.07 2.04 4.94 86.30 0.43 2.46 16 15 C -0.07 -1.89 2.59 -10.79 -0.03 -1.92 16 16 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 17 C -0.15 -4.31 8.66 71.98 0.62 -3.68 16 18 C -0.04 -0.85 5.18 29.85 0.15 -0.70 16 19 C -0.17 -3.72 5.27 24.59 0.13 -3.59 16 20 C -0.15 -3.15 8.60 21.22 0.18 -2.96 16 21 C -0.14 -2.59 10.18 21.22 0.22 -2.37 16 22 C -0.22 -3.80 11.23 66.72 0.75 -3.05 16 23 S 0.08 1.62 23.33 -56.49 -1.32 0.30 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.66 7.45 -2.38 -0.02 1.64 16 26 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 27 H 0.02 1.07 7.20 -2.39 -0.02 1.06 16 28 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 29 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.34 14.80 5.46 -89.69 -0.49 14.31 16 31 H 0.08 2.16 7.44 -2.39 -0.02 2.14 16 32 H 0.01 0.48 8.06 -2.39 -0.02 0.46 16 33 H 0.04 1.37 6.68 -2.39 -0.02 1.35 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.77 6.39 -2.39 -0.02 1.75 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 39 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -63.29 331.36 2.26 -61.03 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.46 Total: 24.20 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 4.04 Total: -44.19 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -2.80 Total: -87.71 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.38 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -1.32 Total: 0.30 kcal Total: -63.29 2.26 -61.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381012843.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.865 kcal (2) G-P(sol) polarization free energy of solvation -63.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds