Wall clock time and date at job start Mon Mar 30 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47287 * 2 1 4 4 C 1.52999 * 109.47133 * 239.99523 * 2 1 3 5 5 N 1.46900 * 109.47138 * 65.00272 * 4 2 1 6 6 C 1.46900 * 110.99829 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.47392 * 324.99467 * 6 5 4 8 8 C 1.52998 * 109.47515 * 84.99908 * 6 5 4 9 9 C 1.52999 * 109.46731 * 204.99923 * 6 5 4 10 10 C 1.50703 * 109.47366 * 65.00066 * 9 6 5 11 11 H 1.08001 * 119.99708 * 359.97438 * 10 9 6 12 12 C 1.37875 * 119.99875 * 180.02562 * 10 9 6 13 13 N 1.31522 * 119.99650 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00350 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.47113 * 90.00490 * 14 12 10 16 16 H 1.48499 * 109.47495 * 210.00328 * 14 12 10 17 17 H 1.48501 * 109.47422 * 330.00504 * 14 12 10 18 18 C 1.53005 * 109.46758 * 119.99844 * 2 1 3 19 19 C 1.50702 * 109.46948 * 294.99875 * 18 2 1 20 20 C 1.33381 * 125.20534 * 90.00166 * 19 18 2 21 21 C 1.38427 * 114.92374 * 180.02562 * 20 19 18 22 22 C 1.33387 * 114.91991 * 0.25034 * 21 20 19 23 23 S 1.75886 * 109.59194 * 359.63459 * 22 21 20 24 24 H 1.09003 * 109.46943 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47026 * 300.00465 * 1 2 3 26 26 H 1.09004 * 109.46791 * 60.00524 * 1 2 3 27 27 H 1.08996 * 109.47187 * 185.00247 * 4 2 1 28 28 H 1.09004 * 109.47117 * 305.00299 * 4 2 1 29 29 H 1.00901 * 111.00065 * 56.04447 * 5 4 2 30 30 H 1.09007 * 109.46998 * 59.99707 * 8 6 5 31 31 H 1.08999 * 109.46987 * 179.97438 * 8 6 5 32 32 H 1.09005 * 109.46859 * 300.00183 * 8 6 5 33 33 H 1.09004 * 109.47070 * 185.00133 * 9 6 5 34 34 H 1.08997 * 109.47388 * 304.99688 * 9 6 5 35 35 H 0.96996 * 119.99649 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.46850 * 175.00116 * 18 2 1 37 37 H 1.08995 * 109.47365 * 55.00124 * 18 2 1 38 38 H 1.08001 * 122.53741 * 0.05729 * 20 19 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.20431 * 179.75072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6515 0.0373 -2.4456 6 6 2.1248 -0.6274 -3.6671 7 1 3.0884 -1.0990 -3.4741 8 6 1.1122 -1.6921 -4.0936 9 6 2.2781 0.4071 -4.7839 10 6 3.3634 1.3860 -4.4165 11 1 3.8908 1.2809 -3.4799 12 6 3.6823 2.4161 -5.2756 13 7 4.6298 3.2701 -4.9551 14 14 2.7696 2.5981 -6.8952 15 1 1.5785 3.4629 -6.6977 16 1 3.6681 3.2160 -7.9031 17 1 2.3363 1.2603 -7.3724 18 6 2.0400 -0.7213 1.2493 19 6 1.6412 0.0571 2.4766 20 6 0.5065 -0.1092 3.1577 21 6 0.3570 0.7225 4.2541 22 6 1.3681 1.5678 4.4604 23 16 2.6007 1.3245 3.2295 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.1263 -0.7996 -1.2055 28 1 1.6054 -1.7199 -1.2950 29 1 1.9882 0.9871 -2.3967 30 1 0.1487 -1.2205 -4.2867 31 1 1.4633 -2.1850 -5.0002 32 1 1.0030 -2.4291 -3.2979 33 1 2.5433 -0.0977 -5.7129 34 1 1.3370 0.9408 -4.9164 35 1 4.8544 3.9946 -5.5597 36 1 3.1263 -0.7995 1.2057 37 1 1.6054 -1.7198 1.2953 38 1 -0.2389 -0.8379 2.8754 39 1 -0.5143 0.6924 4.8915 40 1 1.4224 2.2897 5.2618 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381012844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:03 Heat of formation + Delta-G solvation = 6.007910 kcal Electronic energy + Delta-G solvation = -17912.584615 eV Core-core repulsion = 15238.894329 eV Total energy + Delta-G solvation = -2673.690286 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.43329 -37.11397 -35.07775 -32.51700 -30.90018 -28.94757 -27.84354 -26.77451 -24.70239 -23.06349 -22.25041 -20.07164 -19.29985 -19.22536 -17.05097 -16.80052 -15.68486 -15.17085 -14.67845 -14.55218 -14.16463 -14.00131 -13.14230 -12.87565 -12.65854 -12.61884 -12.36191 -12.28249 -11.95191 -11.80055 -11.66824 -11.52064 -11.34916 -10.94457 -10.81264 -10.71202 -10.50591 -10.39684 -10.20124 -9.78659 -9.44414 -9.20092 -8.63371 -8.55439 -8.50692 -7.65201 -6.06767 -4.05157 0.96688 1.60631 1.98544 2.69741 3.31463 3.38705 3.42777 4.44445 4.61620 4.90444 4.97295 5.04389 5.24055 5.27970 5.44101 5.49657 5.56016 5.67347 5.78203 5.82531 5.91806 5.99377 6.05660 6.12585 6.19553 6.22389 6.24013 6.33305 6.43685 6.45675 6.56319 6.65454 6.73608 6.80492 7.20537 7.30002 7.76404 7.93674 8.26140 8.48632 8.95222 9.56119 11.06263 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.003960 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.185717 B = 7069.868660 C = 7803.231656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.072 0.928 4 C 0.066 3.934 5 N -0.682 5.682 6 C 0.096 3.904 7 H 0.034 0.966 8 C -0.137 4.137 9 C -0.017 4.017 10 C -0.523 4.523 11 H 0.069 0.931 12 C 0.069 3.931 13 N -0.902 5.902 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.266 1.266 18 C -0.047 4.047 19 C -0.155 4.155 20 C -0.147 4.147 21 C -0.133 4.133 22 C -0.225 4.225 23 S 0.097 5.903 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.024 0.976 28 H 0.062 0.938 29 H 0.357 0.643 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.020 0.980 34 H 0.021 0.979 35 H 0.263 0.737 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 -7.515 16.215 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.064 4.064 5 N -0.316 5.316 6 C -0.013 4.013 7 H 0.052 0.948 8 C -0.195 4.195 9 C -0.054 4.054 10 C -0.561 4.561 11 H 0.087 0.913 12 C -0.133 4.133 13 N -0.541 5.541 14 Si 0.709 3.291 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.087 4.087 19 C -0.272 4.272 20 C -0.177 4.177 21 C -0.164 4.164 22 C -0.360 4.360 23 S 0.360 5.640 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.178 0.822 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.993 -6.957 15.821 18.645 hybrid contribution -0.757 -0.117 -0.409 0.869 sum -7.751 -7.074 15.412 18.645 Atomic orbital electron populations 1.21745 0.94448 1.01253 1.01921 1.21126 0.97028 0.99774 0.92353 0.90976 1.21946 0.96977 0.97447 0.90072 1.60548 1.63760 1.06890 1.00413 1.21374 0.94386 0.94739 0.90838 0.94835 1.21821 1.00085 0.98128 0.99454 1.19766 0.97278 0.94429 0.93947 1.21084 1.18397 1.10346 1.06300 0.91302 1.25009 0.94734 0.95383 0.98128 1.69921 1.30727 1.16101 1.37313 0.86751 0.79805 0.78717 0.83830 1.20232 1.21548 1.19041 1.20268 1.01191 0.97733 0.89521 1.24555 0.98608 1.02116 1.01965 1.20094 0.98188 1.02804 0.96631 1.20149 0.99902 0.97165 0.99139 1.25574 0.99131 1.06514 1.04797 1.84482 1.22356 1.34608 1.22515 0.93479 0.93406 0.91199 0.95810 0.91910 0.82184 0.92716 0.93437 0.94163 0.96182 0.96110 0.92744 0.90832 0.90022 0.84468 0.84660 0.82251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.77 37.16 0.33 -1.44 16 2 C -0.08 -1.13 2.52 -90.62 -0.23 -1.36 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.07 1.01 4.87 -3.82 -0.02 0.99 16 5 N -0.68 -12.65 5.76 -106.73 -0.61 -13.27 16 6 C 0.10 1.92 2.59 -67.71 -0.18 1.74 16 7 H 0.03 0.70 7.80 -51.93 -0.41 0.30 16 8 C -0.14 -2.31 9.41 37.16 0.35 -1.96 16 9 C -0.02 -0.39 3.64 -27.88 -0.10 -0.49 16 10 C -0.52 -14.50 8.67 -34.44 -0.30 -14.79 16 11 H 0.07 2.04 7.73 -52.49 -0.41 1.64 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 14 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 18 C -0.05 -0.55 5.18 -27.88 -0.14 -0.69 16 19 C -0.15 -1.80 5.27 -36.00 -0.19 -1.99 16 20 C -0.15 -1.57 8.60 -41.21 -0.35 -1.93 16 21 C -0.13 -1.32 10.18 -41.21 -0.42 -1.74 16 22 C -0.22 -2.27 11.23 29.04 0.33 -1.94 16 23 S 0.10 1.12 23.33 -107.50 -2.51 -1.39 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.59 6.40 -51.93 -0.33 0.25 16 26 H 0.07 1.02 7.75 -51.93 -0.40 0.62 16 27 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 28 H 0.06 0.91 7.44 -51.93 -0.39 0.52 16 29 H 0.36 7.46 7.21 -39.29 -0.28 7.18 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.61 7.45 -51.93 -0.39 0.22 16 33 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 34 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 333.62 15.07 5.03 5.03 Total: -1.00 -29.29 333.62 -9.78 -39.07 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.76 Total: 3.94 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -1.03 Total: -23.71 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.16 Total: -39.98 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.51 Total: -1.39 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.29 -9.78 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381012844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.074 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds