Wall clock time and date at job start Mon Mar 30 2020 06:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47287 * 2 1 4 4 C 1.52999 * 109.47133 * 239.99523 * 2 1 3 5 5 N 1.46900 * 109.47138 * 65.00272 * 4 2 1 6 6 C 1.46900 * 110.99829 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.47392 * 324.99467 * 6 5 4 8 8 C 1.52998 * 109.47515 * 84.99908 * 6 5 4 9 9 C 1.52999 * 109.46731 * 204.99923 * 6 5 4 10 10 C 1.50703 * 109.47366 * 65.00066 * 9 6 5 11 11 H 1.08001 * 119.99708 * 359.97438 * 10 9 6 12 12 C 1.37875 * 119.99875 * 180.02562 * 10 9 6 13 13 N 1.31522 * 119.99650 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00350 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.47113 * 90.00490 * 14 12 10 16 16 H 1.48499 * 109.47495 * 210.00328 * 14 12 10 17 17 H 1.48501 * 109.47422 * 330.00504 * 14 12 10 18 18 C 1.53005 * 109.46758 * 119.99844 * 2 1 3 19 19 C 1.50702 * 109.46948 * 294.99875 * 18 2 1 20 20 C 1.33381 * 125.20534 * 90.00166 * 19 18 2 21 21 C 1.38427 * 114.92374 * 180.02562 * 20 19 18 22 22 C 1.33387 * 114.91991 * 0.25034 * 21 20 19 23 23 S 1.75886 * 109.59194 * 359.63459 * 22 21 20 24 24 H 1.09003 * 109.46943 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47026 * 300.00465 * 1 2 3 26 26 H 1.09004 * 109.46791 * 60.00524 * 1 2 3 27 27 H 1.08996 * 109.47187 * 185.00247 * 4 2 1 28 28 H 1.09004 * 109.47117 * 305.00299 * 4 2 1 29 29 H 1.00901 * 111.00065 * 56.04447 * 5 4 2 30 30 H 1.09007 * 109.46998 * 59.99707 * 8 6 5 31 31 H 1.08999 * 109.46987 * 179.97438 * 8 6 5 32 32 H 1.09005 * 109.46859 * 300.00183 * 8 6 5 33 33 H 1.09004 * 109.47070 * 185.00133 * 9 6 5 34 34 H 1.08997 * 109.47388 * 304.99688 * 9 6 5 35 35 H 0.96996 * 119.99649 * 179.97438 * 13 12 10 36 36 H 1.09000 * 109.46850 * 175.00116 * 18 2 1 37 37 H 1.08995 * 109.47365 * 55.00124 * 18 2 1 38 38 H 1.08001 * 122.53741 * 0.05729 * 20 19 18 39 39 H 1.08002 * 122.53759 * 179.97438 * 21 20 19 40 40 H 1.08002 * 125.20431 * 179.75072 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6515 0.0373 -2.4456 6 6 2.1248 -0.6274 -3.6671 7 1 3.0884 -1.0990 -3.4741 8 6 1.1122 -1.6921 -4.0936 9 6 2.2781 0.4071 -4.7839 10 6 3.3634 1.3860 -4.4165 11 1 3.8908 1.2809 -3.4799 12 6 3.6823 2.4161 -5.2756 13 7 4.6298 3.2701 -4.9551 14 14 2.7696 2.5981 -6.8952 15 1 1.5785 3.4629 -6.6977 16 1 3.6681 3.2160 -7.9031 17 1 2.3363 1.2603 -7.3724 18 6 2.0400 -0.7213 1.2493 19 6 1.6412 0.0571 2.4766 20 6 0.5065 -0.1092 3.1577 21 6 0.3570 0.7225 4.2541 22 6 1.3681 1.5678 4.4604 23 16 2.6007 1.3245 3.2295 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 3.1263 -0.7996 -1.2055 28 1 1.6054 -1.7199 -1.2950 29 1 1.9882 0.9871 -2.3967 30 1 0.1487 -1.2205 -4.2867 31 1 1.4633 -2.1850 -5.0002 32 1 1.0030 -2.4291 -3.2979 33 1 2.5433 -0.0977 -5.7129 34 1 1.3370 0.9408 -4.9164 35 1 4.8544 3.9946 -5.5597 36 1 3.1263 -0.7995 1.2057 37 1 1.6054 -1.7198 1.2953 38 1 -0.2389 -0.8379 2.8754 39 1 -0.5143 0.6924 4.8915 40 1 1.4224 2.2897 5.2618 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381012844.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:03 Heat of formation + Delta-G solvation = -10.369728 kcal Electronic energy + Delta-G solvation = -17913.294803 eV Core-core repulsion = 15238.894329 eV Total energy + Delta-G solvation = -2674.400474 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.42138 -38.38838 -36.38208 -34.55771 -32.22608 -30.22905 -29.53239 -27.71903 -25.94023 -24.50962 -23.60398 -21.31454 -20.81360 -20.06372 -18.95984 -17.93729 -16.74884 -16.56787 -16.28667 -15.91962 -15.59718 -15.18087 -14.64054 -14.10441 -14.01041 -13.74063 -13.48934 -13.48291 -13.37537 -13.22068 -13.00998 -12.75777 -12.64024 -12.50090 -12.07938 -11.86083 -11.81360 -11.70631 -11.66360 -11.45426 -11.23373 -11.14599 -10.75988 -9.48202 -9.39029 -9.16971 -8.28749 -6.32017 0.13984 0.76481 1.16836 1.37221 1.37867 1.49899 1.90380 2.36763 3.05259 3.41664 3.80537 3.98347 4.22989 4.25637 4.27999 4.30044 4.52859 4.60123 4.66387 4.71850 4.74351 4.77890 4.86733 4.93293 5.03042 5.04966 5.14251 5.19152 5.25493 5.28869 5.32935 5.44573 5.47118 5.51763 5.55452 5.67983 5.69090 6.23846 6.41503 6.59504 6.74686 7.32606 8.87533 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.003960 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.185717 B = 7069.868660 C = 7803.231656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 H 0.045 0.955 4 C 0.068 3.932 5 N -0.680 5.680 6 C 0.097 3.903 7 H 0.018 0.982 8 C -0.127 4.127 9 C -0.012 4.012 10 C -0.524 4.524 11 H 0.031 0.969 12 C 0.007 3.993 13 N -0.950 5.950 14 Si 0.950 3.050 15 H -0.269 1.269 16 H -0.287 1.287 17 H -0.247 1.247 18 C -0.040 4.040 19 C -0.171 4.171 20 C -0.142 4.142 21 C -0.138 4.138 22 C -0.219 4.219 23 S 0.049 5.951 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.008 0.992 28 H 0.083 0.917 29 H 0.338 0.662 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.023 0.977 34 H 0.022 0.978 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 -9.072 16.416 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.095 4.095 3 H 0.064 0.936 4 C -0.062 4.062 5 N -0.312 5.312 6 C -0.013 4.013 7 H 0.036 0.964 8 C -0.185 4.185 9 C -0.050 4.050 10 C -0.562 4.562 11 H 0.050 0.950 12 C -0.189 4.189 13 N -0.591 5.591 14 Si 0.774 3.226 15 H -0.194 1.194 16 H -0.213 1.213 17 H -0.171 1.171 18 C -0.080 4.080 19 C -0.288 4.288 20 C -0.172 4.172 21 C -0.168 4.168 22 C -0.354 4.354 23 S 0.311 5.689 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.026 0.974 28 H 0.101 0.899 29 H 0.157 0.843 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.173 0.827 39 H 0.180 0.820 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.457 -8.547 16.033 20.483 hybrid contribution 0.040 0.370 -0.349 0.510 sum -9.417 -8.177 15.684 20.039 Atomic orbital electron populations 1.21653 0.93419 1.02121 1.01262 1.21016 0.97718 0.98303 0.92512 0.93633 1.22023 0.96277 0.98178 0.89682 1.60665 1.63246 1.06057 1.01201 1.21346 0.95096 0.94549 0.90328 0.96403 1.21721 0.98836 0.97327 1.00618 1.19711 0.95498 0.94387 0.95396 1.21360 1.18850 1.11233 1.04787 0.95047 1.25951 0.95678 0.95073 1.02246 1.70073 1.32828 1.17143 1.39028 0.85664 0.78495 0.79558 0.78915 1.19386 1.21297 1.17099 1.20169 1.00883 0.98384 0.88529 1.24549 0.99230 1.02532 1.02512 1.20394 0.97806 1.02709 0.96287 1.20487 1.00609 0.96565 0.99173 1.25866 0.98190 1.06905 1.04478 1.84664 1.24197 1.35764 1.24229 0.91741 0.92730 0.93149 0.97352 0.89913 0.84336 0.92446 0.92397 0.92051 0.95916 0.95941 0.92637 0.91519 0.88007 0.82693 0.82014 0.80152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.77 71.98 0.63 -2.46 16 2 C -0.08 -2.04 2.52 -10.79 -0.03 -2.07 16 3 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 4 C 0.07 2.08 4.87 86.30 0.42 2.50 16 5 N -0.68 -25.30 5.76 -491.58 -2.83 -28.13 16 6 C 0.10 3.79 2.59 44.91 0.12 3.91 16 7 H 0.02 0.75 7.80 -2.39 -0.02 0.73 16 8 C -0.13 -3.94 9.41 71.98 0.68 -3.26 16 9 C -0.01 -0.57 3.64 29.85 0.11 -0.47 16 10 C -0.52 -29.81 8.67 25.60 0.22 -29.59 16 11 H 0.03 1.97 7.73 -2.91 -0.02 1.94 16 12 C 0.01 0.44 5.47 84.65 0.46 0.90 16 13 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 14 Si 0.95 44.64 27.47 68.60 1.88 46.53 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 17 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 18 C -0.04 -0.89 5.18 29.85 0.15 -0.74 16 19 C -0.17 -3.82 5.27 24.59 0.13 -3.69 16 20 C -0.14 -2.70 8.60 21.22 0.18 -2.52 16 21 C -0.14 -2.40 10.18 21.22 0.22 -2.18 16 22 C -0.22 -4.08 11.23 66.72 0.75 -3.33 16 23 S 0.05 1.13 23.33 -56.49 -1.32 -0.19 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.24 6.40 -2.39 -0.02 1.23 16 26 H 0.05 1.42 7.75 -2.39 -0.02 1.40 16 27 H 0.01 0.28 8.06 -2.39 -0.02 0.26 16 28 H 0.08 2.21 7.44 -2.39 -0.02 2.20 16 29 H 0.34 14.72 7.21 -89.69 -0.65 14.08 16 30 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.64 7.45 -2.38 -0.02 1.63 16 33 H 0.02 1.05 7.20 -2.38 -0.02 1.03 16 34 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 35 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 40 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -64.26 333.62 2.37 -61.89 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.30 Total: 22.25 kcal Atomic # 6 Polarization: -47.05 SS G_CDS: 4.04 Total: -43.00 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -2.53 Total: -87.47 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -1.32 Total: -0.19 kcal Total: -64.26 2.37 -61.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381012844.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.516 kcal (2) G-P(sol) polarization free energy of solvation -64.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds