Wall clock time and date at job start Mon Mar 30 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46187 * 2 1 4 4 C 1.52993 * 109.47000 * 119.99645 * 2 1 3 5 5 N 1.46906 * 109.47378 * 295.00175 * 4 2 1 6 6 C 1.46898 * 110.99888 * 180.02562 * 5 4 2 7 7 H 1.08994 * 109.47465 * 35.00194 * 6 5 4 8 8 C 1.53000 * 109.47140 * 275.00023 * 6 5 4 9 9 C 1.53002 * 109.46954 * 155.00307 * 6 5 4 10 10 C 1.50700 * 109.46700 * 294.99855 * 9 6 5 11 11 H 1.07998 * 120.00711 * 0.02562 * 10 9 6 12 12 C 1.37883 * 119.99794 * 180.02562 * 10 9 6 13 13 N 1.31515 * 119.99647 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00205 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47469 * 89.99278 * 14 12 10 16 16 H 1.48502 * 109.47192 * 209.99587 * 14 12 10 17 17 H 1.48500 * 109.46827 * 329.99535 * 14 12 10 18 18 C 1.52993 * 109.47089 * 239.99999 * 2 1 3 19 19 C 1.50696 * 109.47454 * 65.00030 * 18 2 1 20 20 C 1.33385 * 125.20804 * 89.71342 * 19 18 2 21 21 C 1.38428 * 114.92494 * 179.86034 * 20 19 18 22 22 C 1.33386 * 114.91887 * 0.43333 * 21 20 19 23 23 S 1.75887 * 125.20095 * 270.02346 * 19 18 2 24 24 H 1.08992 * 109.47276 * 60.00586 * 1 2 3 25 25 H 1.09007 * 109.46734 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47100 * 299.99682 * 1 2 3 27 27 H 1.09004 * 109.46862 * 175.00278 * 4 2 1 28 28 H 1.09000 * 109.47250 * 55.00302 * 4 2 1 29 29 H 1.00901 * 111.00013 * 303.95621 * 5 4 2 30 30 H 1.09000 * 109.47000 * 299.99967 * 8 6 5 31 31 H 1.08994 * 109.47134 * 60.00288 * 8 6 5 32 32 H 1.09006 * 109.47131 * 180.02562 * 8 6 5 33 33 H 1.08997 * 109.47201 * 54.99768 * 9 6 5 34 34 H 1.08999 * 109.47075 * 175.00289 * 9 6 5 35 35 H 0.97007 * 119.99690 * 180.02562 * 13 12 10 36 36 H 1.09005 * 109.46976 * 184.99985 * 18 2 1 37 37 H 1.09005 * 109.47398 * 304.99596 * 18 2 1 38 38 H 1.07996 * 122.53733 * 0.02562 * 20 19 18 39 39 H 1.08000 * 122.54048 * 180.20193 * 21 20 19 40 40 H 1.07992 * 125.20365 * 179.78903 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 1.6514 0.0376 2.4457 6 6 2.1258 -0.6263 3.6672 7 1 3.0895 -1.0973 3.4739 8 6 1.1141 -1.6917 4.0944 9 6 2.2786 0.4086 4.7836 10 6 3.3630 1.3882 4.4154 11 1 3.8902 1.2834 3.4786 12 6 3.6823 2.4183 5.2745 13 7 3.0400 2.5462 6.4150 14 14 5.0259 3.6329 4.8178 15 1 4.4318 4.7708 4.0712 16 1 5.6776 4.1377 6.0530 17 1 6.0366 2.9559 3.9661 18 6 2.0401 -0.7212 -1.2492 19 6 1.6414 0.0570 -2.4765 20 6 2.3668 1.0214 -3.0449 21 6 1.7973 1.5940 -4.1691 22 6 0.6053 1.1010 -4.5085 23 16 0.1449 -0.1621 -3.3743 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1264 -0.7993 1.2056 28 1 1.6055 -1.7197 1.2952 29 1 1.9881 0.9875 2.3967 30 1 0.1503 -1.2207 4.2877 31 1 1.0052 -2.4290 3.2991 32 1 1.4659 -2.1840 5.0010 33 1 1.3372 0.9417 4.9163 34 1 2.5447 -0.0957 5.7126 35 1 3.2644 3.2712 7.0192 36 1 3.1264 -0.7994 -1.2055 37 1 1.6055 -1.7198 -1.2951 38 1 3.3270 1.3301 -2.6588 39 1 2.2798 2.3830 -4.7270 40 1 0.0135 1.4271 -5.3509 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381012845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:06 Heat of formation + Delta-G solvation = 2.681142 kcal Electronic energy + Delta-G solvation = -17906.093830 eV Core-core repulsion = 15232.259284 eV Total energy + Delta-G solvation = -2673.834546 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.37402 -37.10000 -35.06059 -32.58174 -30.78765 -28.91827 -27.37285 -26.50786 -24.82806 -23.20719 -22.49353 -20.18236 -19.36626 -19.00315 -17.16194 -16.34712 -15.56681 -15.23126 -14.78140 -14.52651 -14.17374 -14.03643 -13.09187 -12.94211 -12.89560 -12.44257 -12.41538 -11.98968 -11.83279 -11.69217 -11.56120 -11.26603 -11.22016 -10.92765 -10.83009 -10.73962 -10.51521 -10.45647 -10.33549 -10.13669 -9.21289 -9.05328 -8.66414 -8.49769 -8.39064 -7.58842 -6.02391 -4.05388 0.92945 1.56258 1.93375 2.67800 3.29599 3.36422 3.38558 4.43281 4.60940 4.91680 4.96335 5.00742 5.27018 5.32496 5.42616 5.48028 5.51947 5.65816 5.81210 5.88747 5.94817 6.04062 6.06764 6.17598 6.22189 6.27628 6.28430 6.34072 6.40904 6.53169 6.60743 6.65826 6.95574 6.97782 7.55343 7.64984 7.97669 8.09735 8.31081 8.39049 9.00863 9.58742 11.08546 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.004130 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.253997 B = 6778.130910 C = 7769.540896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 H 0.072 0.928 4 C 0.065 3.935 5 N -0.681 5.681 6 C 0.087 3.913 7 H 0.027 0.973 8 C -0.134 4.134 9 C 0.021 3.979 10 C -0.523 4.523 11 H 0.051 0.949 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.889 3.111 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.048 4.048 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.130 4.130 22 C -0.227 4.227 23 S 0.094 5.906 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.022 0.978 28 H 0.062 0.938 29 H 0.353 0.647 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.025 0.975 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.278 -5.739 -19.411 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.065 4.065 5 N -0.314 5.314 6 C -0.022 4.022 7 H 0.045 0.955 8 C -0.192 4.192 9 C -0.017 4.017 10 C -0.562 4.562 11 H 0.069 0.931 12 C -0.141 4.141 13 N -0.530 5.530 14 Si 0.717 3.283 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.087 4.087 19 C -0.271 4.271 20 C -0.179 4.179 21 C -0.161 4.161 22 C -0.362 4.362 23 S 0.357 5.643 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.174 0.826 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.172 -6.844 -19.078 21.187 hybrid contribution 2.957 1.944 -0.459 3.568 sum -3.215 -4.901 -19.537 20.397 Atomic orbital electron populations 1.21815 0.94489 1.01447 1.02092 1.21136 0.96997 0.99754 0.92376 0.90938 1.21955 0.96784 0.97582 0.90174 1.60542 1.63831 1.06600 1.00451 1.21597 0.93910 0.95403 0.91279 0.95454 1.21785 1.00225 0.97972 0.99230 1.19274 0.97270 0.92675 0.92445 1.21174 1.19238 1.11488 1.04262 0.93058 1.24986 0.96390 0.97707 0.95001 1.69964 1.41311 1.31917 1.09809 0.86647 0.82173 0.81590 0.77902 1.20599 1.21227 1.20033 1.20285 1.01420 0.97565 0.89471 1.24542 0.97735 1.02915 1.01920 1.20149 1.02254 0.98170 0.97335 1.20159 0.95616 1.02069 0.98209 1.25580 1.01422 1.03964 1.05246 1.84290 1.20802 1.37459 1.21729 0.93389 0.93415 0.90897 0.96003 0.91930 0.82592 0.92695 0.94576 0.93452 0.95622 0.96149 0.92961 0.90046 0.90796 0.84361 0.84587 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.81 37.16 0.33 -1.54 16 2 C -0.08 -1.11 2.52 -90.62 -0.23 -1.34 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.07 1.00 4.87 -3.82 -0.02 0.98 16 5 N -0.68 -12.82 5.76 -106.73 -0.62 -13.43 16 6 C 0.09 1.81 2.59 -67.71 -0.18 1.64 16 7 H 0.03 0.59 7.80 -51.93 -0.40 0.18 16 8 C -0.13 -2.42 9.41 37.16 0.35 -2.07 16 9 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 10 C -0.52 -14.34 8.12 -34.44 -0.28 -14.62 16 11 H 0.05 1.37 7.49 -52.49 -0.39 0.97 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.05 -0.54 5.18 -27.89 -0.14 -0.68 16 19 C -0.15 -1.76 5.08 -36.01 -0.18 -1.94 16 20 C -0.15 -1.67 10.05 -41.21 -0.41 -2.08 16 21 C -0.13 -1.31 10.18 -41.21 -0.42 -1.73 16 22 C -0.23 -2.21 11.23 29.04 0.33 -1.88 16 23 S 0.09 0.99 21.89 -107.50 -2.35 -1.37 16 24 H 0.05 0.60 6.17 -51.93 -0.32 0.28 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.09 7.75 -51.93 -0.40 0.69 16 27 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 28 H 0.06 0.93 7.44 -51.93 -0.39 0.54 16 29 H 0.35 7.30 7.21 -39.29 -0.28 7.02 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 336.85 15.07 5.08 5.08 Total: -1.00 -28.91 336.85 -10.04 -38.95 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.78 Total: 3.42 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -1.08 Total: -23.26 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.12 Total: -39.20 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.35 Total: -1.37 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.91 -10.04 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381012845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.632 kcal (2) G-P(sol) polarization free energy of solvation -28.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds