Wall clock time and date at job start Mon Mar 30 2020 06:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46187 * 2 1 4 4 C 1.52993 * 109.47000 * 119.99645 * 2 1 3 5 5 N 1.46906 * 109.47378 * 295.00175 * 4 2 1 6 6 C 1.46898 * 110.99888 * 180.02562 * 5 4 2 7 7 H 1.08994 * 109.47465 * 35.00194 * 6 5 4 8 8 C 1.53000 * 109.47140 * 275.00023 * 6 5 4 9 9 C 1.53002 * 109.46954 * 155.00307 * 6 5 4 10 10 C 1.50700 * 109.46700 * 294.99855 * 9 6 5 11 11 H 1.07998 * 120.00711 * 0.02562 * 10 9 6 12 12 C 1.37883 * 119.99794 * 180.02562 * 10 9 6 13 13 N 1.31515 * 119.99647 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00205 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47469 * 89.99278 * 14 12 10 16 16 H 1.48502 * 109.47192 * 209.99587 * 14 12 10 17 17 H 1.48500 * 109.46827 * 329.99535 * 14 12 10 18 18 C 1.52993 * 109.47089 * 239.99999 * 2 1 3 19 19 C 1.50696 * 109.47454 * 65.00030 * 18 2 1 20 20 C 1.33385 * 125.20804 * 89.71342 * 19 18 2 21 21 C 1.38428 * 114.92494 * 179.86034 * 20 19 18 22 22 C 1.33386 * 114.91887 * 0.43333 * 21 20 19 23 23 S 1.75887 * 125.20095 * 270.02346 * 19 18 2 24 24 H 1.08992 * 109.47276 * 60.00586 * 1 2 3 25 25 H 1.09007 * 109.46734 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47100 * 299.99682 * 1 2 3 27 27 H 1.09004 * 109.46862 * 175.00278 * 4 2 1 28 28 H 1.09000 * 109.47250 * 55.00302 * 4 2 1 29 29 H 1.00901 * 111.00013 * 303.95621 * 5 4 2 30 30 H 1.09000 * 109.47000 * 299.99967 * 8 6 5 31 31 H 1.08994 * 109.47134 * 60.00288 * 8 6 5 32 32 H 1.09006 * 109.47131 * 180.02562 * 8 6 5 33 33 H 1.08997 * 109.47201 * 54.99768 * 9 6 5 34 34 H 1.08999 * 109.47075 * 175.00289 * 9 6 5 35 35 H 0.97007 * 119.99690 * 180.02562 * 13 12 10 36 36 H 1.09005 * 109.46976 * 184.99985 * 18 2 1 37 37 H 1.09005 * 109.47398 * 304.99596 * 18 2 1 38 38 H 1.07996 * 122.53733 * 0.02562 * 20 19 18 39 39 H 1.08000 * 122.54048 * 180.20193 * 21 20 19 40 40 H 1.07992 * 125.20365 * 179.78903 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 7 1.6514 0.0376 2.4457 6 6 2.1258 -0.6263 3.6672 7 1 3.0895 -1.0973 3.4739 8 6 1.1141 -1.6917 4.0944 9 6 2.2786 0.4086 4.7836 10 6 3.3630 1.3882 4.4154 11 1 3.8902 1.2834 3.4786 12 6 3.6823 2.4183 5.2745 13 7 3.0400 2.5462 6.4150 14 14 5.0259 3.6329 4.8178 15 1 4.4318 4.7708 4.0712 16 1 5.6776 4.1377 6.0530 17 1 6.0366 2.9559 3.9661 18 6 2.0401 -0.7212 -1.2492 19 6 1.6414 0.0570 -2.4765 20 6 2.3668 1.0214 -3.0449 21 6 1.7973 1.5940 -4.1691 22 6 0.6053 1.1010 -4.5085 23 16 0.1449 -0.1621 -3.3743 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1264 -0.7993 1.2056 28 1 1.6055 -1.7197 1.2952 29 1 1.9881 0.9875 2.3967 30 1 0.1503 -1.2207 4.2877 31 1 1.0052 -2.4290 3.2991 32 1 1.4659 -2.1840 5.0010 33 1 1.3372 0.9417 4.9163 34 1 2.5447 -0.0957 5.7126 35 1 3.2644 3.2712 7.0192 36 1 3.1264 -0.7994 -1.2055 37 1 1.6055 -1.7198 -1.2951 38 1 3.3270 1.3301 -2.6588 39 1 2.2798 2.3830 -4.7270 40 1 0.0135 1.4271 -5.3509 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381012845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:05 Heat of formation + Delta-G solvation = -12.538427 kcal Electronic energy + Delta-G solvation = -17906.753800 eV Core-core repulsion = 15232.259284 eV Total energy + Delta-G solvation = -2674.494516 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.34641 -38.37316 -36.41390 -34.57407 -32.06067 -30.14729 -29.26600 -27.45437 -26.07296 -24.90529 -23.63958 -21.36136 -20.92272 -19.88085 -18.50817 -18.00354 -16.78348 -16.48140 -16.34021 -15.83009 -15.64915 -15.21835 -14.61678 -14.01970 -13.83226 -13.65555 -13.50667 -13.39675 -13.23309 -13.12404 -13.02622 -12.77231 -12.62150 -12.56831 -12.36094 -12.07406 -11.87398 -11.75031 -11.56036 -11.50404 -11.15236 -10.97182 -10.57286 -9.48898 -9.29315 -9.11555 -8.19179 -6.29613 0.13192 0.77750 1.15122 1.39620 1.40106 1.50409 1.88444 2.40188 3.12508 3.43824 3.83097 3.97761 4.25517 4.26838 4.33463 4.34543 4.48628 4.61390 4.71300 4.73570 4.75560 4.78641 4.88615 4.91858 5.03325 5.07407 5.17231 5.24431 5.26315 5.35564 5.39569 5.45795 5.51837 5.54676 5.58291 5.65675 5.85211 6.21684 6.46807 6.68604 6.85865 7.39207 8.92550 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.004130 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.253997 B = 6778.130910 C = 7769.540896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 H 0.058 0.942 4 C 0.067 3.933 5 N -0.682 5.682 6 C 0.095 3.905 7 H 0.023 0.977 8 C -0.126 4.126 9 C 0.028 3.972 10 C -0.534 4.534 11 H 0.057 0.943 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.960 3.040 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.265 1.265 18 C -0.040 4.040 19 C -0.172 4.172 20 C -0.157 4.157 21 C -0.142 4.142 22 C -0.224 4.224 23 S 0.090 5.910 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.020 0.980 28 H 0.075 0.925 29 H 0.340 0.660 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.050 0.950 33 H -0.004 1.004 34 H -0.007 1.007 35 H 0.263 0.737 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.142 0.858 39 H 0.155 0.845 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 -5.941 -21.563 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.062 4.062 5 N -0.314 5.314 6 C -0.014 4.014 7 H 0.041 0.959 8 C -0.184 4.184 9 C -0.010 4.010 10 C -0.572 4.572 11 H 0.075 0.925 12 C -0.194 4.194 13 N -0.571 5.571 14 Si 0.785 3.215 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.190 1.190 18 C -0.080 4.080 19 C -0.289 4.289 20 C -0.187 4.187 21 C -0.173 4.173 22 C -0.359 4.359 23 S 0.353 5.647 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.093 0.907 29 H 0.159 0.841 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.015 0.985 34 H 0.012 0.988 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.160 0.840 39 H 0.173 0.827 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.743 -7.068 -21.248 23.117 hybrid contribution 2.788 2.001 0.179 3.436 sum -2.956 -5.067 -21.068 21.870 Atomic orbital electron populations 1.21743 0.94351 1.01790 1.01336 1.21020 0.96975 0.98957 0.92473 0.92379 1.22030 0.96824 0.97876 0.89475 1.60585 1.63657 1.06100 1.01049 1.21413 0.94807 0.94602 0.90602 0.95889 1.21696 0.98874 0.97557 1.00296 1.19132 0.95309 0.93295 0.93221 1.21523 1.19449 1.11836 1.04352 0.92482 1.25887 0.98833 0.99770 0.94863 1.70099 1.43113 1.32861 1.11027 0.85528 0.79195 0.79095 0.77705 1.19815 1.20989 1.18972 1.20182 1.01749 0.97702 0.88382 1.24583 0.98462 1.03523 1.02362 1.20389 1.02542 0.98080 0.97718 1.20402 0.95949 1.02706 0.98193 1.25925 1.01432 1.03099 1.05430 1.84269 1.20409 1.37958 1.22025 0.92750 0.92494 0.92999 0.96196 0.90701 0.84058 0.93320 0.91942 0.93088 0.98543 0.98836 0.92850 0.89529 0.89791 0.84000 0.82737 0.79988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 8.81 71.99 0.63 -2.79 16 2 C -0.07 -1.91 2.52 -10.80 -0.03 -1.94 16 3 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.07 1.99 4.87 86.30 0.42 2.41 16 5 N -0.68 -25.52 5.76 -491.57 -2.83 -28.35 16 6 C 0.10 3.96 2.59 44.92 0.12 4.07 16 7 H 0.02 0.97 7.80 -2.39 -0.02 0.96 16 8 C -0.13 -4.44 9.41 71.98 0.68 -3.77 16 9 C 0.03 1.46 4.57 29.85 0.14 1.60 16 10 C -0.53 -29.62 8.12 25.60 0.21 -29.42 16 11 H 0.06 3.04 7.49 -2.91 -0.02 3.02 16 12 C 0.00 0.26 5.46 84.66 0.46 0.72 16 13 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 14 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 18 C -0.04 -0.85 5.18 29.84 0.15 -0.69 16 19 C -0.17 -3.66 5.08 24.59 0.12 -3.53 16 20 C -0.16 -3.26 10.05 21.22 0.21 -3.05 16 21 C -0.14 -2.58 10.18 21.22 0.22 -2.37 16 22 C -0.22 -3.83 11.23 66.72 0.75 -3.08 16 23 S 0.09 1.73 21.89 -56.49 -1.24 0.49 16 24 H 0.05 1.30 6.17 -2.39 -0.01 1.29 16 25 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.05 1.53 7.75 -2.39 -0.02 1.51 16 27 H 0.02 0.60 8.06 -2.38 -0.02 0.59 16 28 H 0.07 2.04 7.44 -2.39 -0.02 2.03 16 29 H 0.34 14.22 7.21 -89.69 -0.65 13.57 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.86 7.45 -2.39 -0.02 1.84 16 32 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 35 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 36 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -62.02 336.85 2.68 -59.35 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.35 Total: 20.54 kcal Atomic # 6 Polarization: -45.91 SS G_CDS: 4.09 Total: -41.82 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -2.55 Total: -84.57 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.24 Total: 0.49 kcal Total: -62.02 2.68 -59.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381012845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.807 kcal (2) G-P(sol) polarization free energy of solvation -62.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds