Wall clock time and date at job start Mon Mar 30 2020 06:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46892 * 109.47200 * 2 1 4 4 C 1.46904 * 111.00131 * 305.77255 * 3 2 1 5 5 C 1.52993 * 109.46890 * 293.95490 * 4 3 2 6 6 C 1.46901 * 111.00037 * 69.72459 * 3 2 1 7 7 C 1.50701 * 109.46972 * 75.43923 * 6 3 2 8 8 N 1.29949 * 126.29049 * 83.99207 * 7 6 3 9 9 O 1.21299 * 110.24976 * 179.97438 * 8 7 6 10 10 C 1.33642 * 109.81525 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.55249 * 180.02562 * 10 9 8 12 12 H 1.09008 * 109.47227 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47181 * 299.97559 * 11 10 9 14 14 C 1.52995 * 109.47298 * 59.97630 * 11 10 9 15 15 C 1.50703 * 109.47577 * 174.99949 * 14 11 10 16 16 H 1.08005 * 119.99248 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00180 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99963 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00048 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47088 * 90.00285 * 19 17 15 21 21 H 1.48501 * 109.47026 * 210.00065 * 19 17 15 22 22 H 1.48498 * 109.47193 * 329.99769 * 19 17 15 23 23 N 1.31129 * 106.89583 * 359.76812 * 10 9 8 24 24 H 1.09001 * 109.47109 * 185.16430 * 1 2 3 25 25 H 1.09001 * 109.46893 * 305.15096 * 1 2 3 26 26 H 1.08994 * 109.47356 * 65.16034 * 1 2 3 27 27 H 1.09000 * 109.47078 * 239.99581 * 2 1 3 28 28 H 1.09006 * 109.47394 * 120.00259 * 2 1 3 29 29 H 1.09001 * 109.46774 * 53.95290 * 4 3 2 30 30 H 1.09003 * 109.47129 * 173.95349 * 4 3 2 31 31 H 1.09001 * 109.47249 * 299.99509 * 5 4 3 32 32 H 1.09003 * 109.47350 * 59.99995 * 5 4 3 33 33 H 1.09008 * 109.46784 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47347 * 195.43420 * 6 3 2 35 35 H 1.08996 * 109.47230 * 315.43808 * 6 3 2 36 36 H 1.08997 * 109.47209 * 179.97438 * 13 11 10 37 37 H 1.09001 * 109.47334 * 299.99870 * 13 11 10 38 38 H 1.08995 * 109.46964 * 60.00194 * 13 11 10 39 39 H 1.09000 * 109.47497 * 295.00497 * 14 11 10 40 40 H 1.08999 * 109.47269 * 55.00024 * 14 11 10 41 41 H 0.96996 * 120.00032 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4393 2.1485 -1.1127 5 6 1.9483 1.5825 -2.4398 6 6 1.7471 2.0397 1.2865 7 6 2.7171 1.5339 2.3230 8 7 3.9221 1.9748 2.5286 9 8 4.4451 1.3602 3.4342 10 6 3.5976 0.4414 3.9071 11 6 3.8596 -0.5273 5.0313 12 1 2.9788 -1.1503 5.1869 13 6 5.0543 -1.4134 4.6729 14 6 4.1674 0.2498 6.3128 15 6 4.3084 -0.7136 7.4630 16 1 4.1898 -1.7742 7.2966 17 6 4.5876 -0.2411 8.7278 18 7 4.7111 -1.0820 9.7315 19 14 4.7904 1.5933 9.0159 20 1 3.4732 2.1900 9.3536 21 1 5.7372 1.8165 10.1380 22 1 5.3222 2.2318 7.7852 23 7 2.4923 0.5477 3.2095 24 1 -0.3633 -1.0235 0.0925 25 1 -0.3633 0.5917 0.8403 26 1 -0.3634 0.4317 -0.9325 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.3525 2.0720 -1.0780 30 1 1.7329 3.1948 -1.0275 31 1 3.0350 1.6590 -2.4746 32 1 1.6547 0.5362 -2.5251 33 1 1.5173 2.1488 -3.2655 34 1 1.8620 3.1180 1.1769 35 1 0.7284 1.8130 1.6009 36 1 5.2441 -2.1138 5.4862 37 1 4.8350 -1.9671 3.7599 38 1 5.9350 -0.7905 4.5174 39 1 5.0974 0.8042 6.1871 40 1 3.3546 0.9460 6.5196 41 1 4.9072 -0.7496 10.6214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383153843.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:09 Heat of formation + Delta-G solvation = 59.482073 kcal Electronic energy + Delta-G solvation = -20584.521124 eV Core-core repulsion = 17502.689532 eV Total energy + Delta-G solvation = -3081.831592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.17683 -38.76705 -35.99835 -35.22904 -32.62324 -31.60839 -31.30605 -29.99857 -27.72572 -26.42219 -24.61536 -24.25000 -23.03126 -21.90966 -20.33181 -19.29177 -17.70264 -17.17949 -16.78607 -16.23226 -16.08684 -14.82848 -14.75505 -14.46607 -14.09988 -13.67248 -13.23507 -12.96306 -12.81723 -12.58434 -12.43061 -12.21504 -12.05029 -12.03906 -11.66484 -11.51995 -11.38771 -11.16525 -11.10866 -10.93126 -10.85757 -10.64474 -10.31292 -10.16283 -9.86494 -9.37863 -9.28919 -8.61513 -8.58444 -6.12219 -4.12131 1.55768 2.48296 3.27881 3.30635 3.36077 3.40093 3.61690 4.03905 4.28000 4.39358 4.68844 4.86724 4.89524 5.03225 5.08417 5.19019 5.21373 5.23786 5.29014 5.43283 5.51993 5.64228 5.68300 5.73649 5.74414 5.81226 5.89390 5.94437 6.08792 6.20092 6.27071 6.48085 6.52891 6.72472 6.81589 6.82507 7.00263 7.17830 7.63174 8.40097 8.55812 8.89797 9.48791 11.00212 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.036065 B = 0.003900 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.197206 B = 7177.015945 C = 7396.555464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.045 3.955 3 N -0.533 5.533 4 C 0.047 3.953 5 C -0.148 4.148 6 C 0.146 3.854 7 C 0.169 3.831 8 N -0.382 5.382 9 O 0.075 5.925 10 C 0.212 3.788 11 C 0.010 3.990 12 H 0.110 0.890 13 C -0.136 4.136 14 C -0.008 4.008 15 C -0.520 4.520 16 H 0.080 0.920 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.873 3.127 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.264 1.264 23 N -0.497 5.497 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.028 0.972 40 H 0.017 0.983 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 4.322 -20.361 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.083 4.083 3 N -0.258 5.258 4 C -0.080 4.080 5 C -0.205 4.205 6 C 0.017 3.983 7 C -0.105 4.105 8 N -0.091 5.091 9 O 0.018 5.982 10 C -0.007 4.007 11 C -0.011 4.011 12 H 0.128 0.872 13 C -0.194 4.194 14 C -0.046 4.046 15 C -0.558 4.558 16 H 0.098 0.902 17 C -0.129 4.129 18 N -0.536 5.536 19 Si 0.700 3.300 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.188 1.188 23 N -0.231 5.231 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.035 0.965 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.083 4.869 -20.833 22.242 hybrid contribution -0.755 0.938 0.590 1.341 sum -6.838 5.808 -20.243 22.141 Atomic orbital electron populations 1.22378 0.97885 1.02784 1.01747 1.22238 0.93195 0.89519 1.03347 1.62079 1.59269 1.02770 1.01682 1.22153 0.97377 0.97747 0.90734 1.21772 1.02212 1.01031 0.95515 1.20184 0.94167 0.98446 0.85550 1.25443 0.92703 0.93962 0.98346 1.74569 1.10843 1.18369 1.05360 1.85288 1.40292 1.37002 1.35667 1.29573 0.83265 0.91561 0.96337 1.20101 1.01438 0.91894 0.87649 0.87163 1.21791 0.96415 0.99730 1.01496 1.19718 0.97116 0.96375 0.91397 1.20924 1.49301 0.94675 0.90898 0.90209 1.24937 0.94452 0.97558 0.96003 1.69887 1.48722 1.34472 1.00501 0.86874 0.78447 0.86282 0.78356 1.20249 1.21158 1.18824 1.71913 1.24317 1.18627 1.08224 0.91759 0.92290 0.92408 0.90407 0.90068 0.93902 0.90740 0.91807 0.92581 0.92258 0.88587 0.90986 0.89191 0.93841 0.92366 0.95331 0.96495 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 9.10 37.16 0.34 -1.39 16 2 C 0.04 0.49 5.63 -3.83 -0.02 0.47 16 3 N -0.53 -6.12 4.63 -236.08 -1.09 -7.21 16 4 C 0.05 0.41 5.30 -3.83 -0.02 0.39 16 5 C -0.15 -1.13 9.83 37.15 0.37 -0.77 16 6 C 0.15 1.83 5.52 -4.97 -0.03 1.80 16 7 C 0.17 2.81 7.05 -156.36 -1.10 1.70 16 8 N -0.38 -6.97 12.16 30.90 0.38 -6.59 16 9 O 0.07 1.42 11.31 18.10 0.20 1.62 16 10 C 0.21 3.94 7.02 -13.06 -0.09 3.84 16 11 C 0.01 0.18 2.81 -91.77 -0.26 -0.08 16 12 H 0.11 2.06 8.14 -51.92 -0.42 1.64 16 13 C -0.14 -2.31 8.99 37.16 0.33 -1.98 16 14 C -0.01 -0.18 3.50 -27.88 -0.10 -0.27 16 15 C -0.52 -13.74 8.96 -34.44 -0.31 -14.05 16 16 H 0.08 2.21 7.30 -52.48 -0.38 1.83 16 17 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 18 N -0.90 -26.54 13.96 55.43 0.77 -25.77 16 19 Si 0.87 21.11 27.47 -169.99 -4.67 16.44 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 23 N -0.50 -8.91 11.18 -9.87 -0.11 -9.03 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.58 6.28 -51.93 -0.33 0.25 16 26 H 0.06 0.45 6.51 -51.93 -0.34 0.12 16 27 H 0.08 0.78 6.75 -51.93 -0.35 0.42 16 28 H 0.08 1.08 7.12 -51.93 -0.37 0.72 16 29 H 0.04 0.33 5.98 -51.93 -0.31 0.02 16 30 H 0.07 0.61 7.83 -51.93 -0.41 0.20 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.43 6.68 -51.93 -0.35 0.08 16 33 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.10 1.07 7.74 -51.93 -0.40 0.67 16 35 H 0.07 0.84 6.10 -51.93 -0.32 0.52 16 36 H 0.09 1.61 6.95 -51.93 -0.36 1.25 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 40 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 327.80 15.07 4.94 4.94 Total: -1.00 -29.56 327.80 -6.95 -36.51 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.38 Total: -2.52 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.99 Total: -8.40 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.05 Total: -48.59 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.20 Total: 1.62 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.56 -6.95 -36.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383153843.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.991 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds