Wall clock time and date at job start Mon Mar 30 2020 06:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46892 * 109.47200 * 2 1 4 4 C 1.46904 * 111.00131 * 305.77255 * 3 2 1 5 5 C 1.52993 * 109.46890 * 293.95490 * 4 3 2 6 6 C 1.46901 * 111.00037 * 69.72459 * 3 2 1 7 7 C 1.50701 * 109.46972 * 75.43923 * 6 3 2 8 8 N 1.29949 * 126.29049 * 83.99207 * 7 6 3 9 9 O 1.21299 * 110.24976 * 179.97438 * 8 7 6 10 10 C 1.33642 * 109.81525 * 359.97438 * 9 8 7 11 11 C 1.50698 * 126.55249 * 180.02562 * 10 9 8 12 12 H 1.09008 * 109.47227 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47181 * 299.97559 * 11 10 9 14 14 C 1.52995 * 109.47298 * 59.97630 * 11 10 9 15 15 C 1.50703 * 109.47577 * 174.99949 * 14 11 10 16 16 H 1.08005 * 119.99248 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00180 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99963 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00048 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47088 * 90.00285 * 19 17 15 21 21 H 1.48501 * 109.47026 * 210.00065 * 19 17 15 22 22 H 1.48498 * 109.47193 * 329.99769 * 19 17 15 23 23 N 1.31129 * 106.89583 * 359.76812 * 10 9 8 24 24 H 1.09001 * 109.47109 * 185.16430 * 1 2 3 25 25 H 1.09001 * 109.46893 * 305.15096 * 1 2 3 26 26 H 1.08994 * 109.47356 * 65.16034 * 1 2 3 27 27 H 1.09000 * 109.47078 * 239.99581 * 2 1 3 28 28 H 1.09006 * 109.47394 * 120.00259 * 2 1 3 29 29 H 1.09001 * 109.46774 * 53.95290 * 4 3 2 30 30 H 1.09003 * 109.47129 * 173.95349 * 4 3 2 31 31 H 1.09001 * 109.47249 * 299.99509 * 5 4 3 32 32 H 1.09003 * 109.47350 * 59.99995 * 5 4 3 33 33 H 1.09008 * 109.46784 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47347 * 195.43420 * 6 3 2 35 35 H 1.08996 * 109.47230 * 315.43808 * 6 3 2 36 36 H 1.08997 * 109.47209 * 179.97438 * 13 11 10 37 37 H 1.09001 * 109.47334 * 299.99870 * 13 11 10 38 38 H 1.08995 * 109.46964 * 60.00194 * 13 11 10 39 39 H 1.09000 * 109.47497 * 295.00497 * 14 11 10 40 40 H 1.08999 * 109.47269 * 55.00024 * 14 11 10 41 41 H 0.96996 * 120.00032 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4393 2.1485 -1.1127 5 6 1.9483 1.5825 -2.4398 6 6 1.7471 2.0397 1.2865 7 6 2.7171 1.5339 2.3230 8 7 3.9221 1.9748 2.5286 9 8 4.4451 1.3602 3.4342 10 6 3.5976 0.4414 3.9071 11 6 3.8596 -0.5273 5.0313 12 1 2.9788 -1.1503 5.1869 13 6 5.0543 -1.4134 4.6729 14 6 4.1674 0.2498 6.3128 15 6 4.3084 -0.7136 7.4630 16 1 4.1898 -1.7742 7.2966 17 6 4.5876 -0.2411 8.7278 18 7 4.7111 -1.0820 9.7315 19 14 4.7904 1.5933 9.0159 20 1 3.4732 2.1900 9.3536 21 1 5.7372 1.8165 10.1380 22 1 5.3222 2.2318 7.7852 23 7 2.4923 0.5477 3.2095 24 1 -0.3633 -1.0235 0.0925 25 1 -0.3633 0.5917 0.8403 26 1 -0.3634 0.4317 -0.9325 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.3525 2.0720 -1.0780 30 1 1.7329 3.1948 -1.0275 31 1 3.0350 1.6590 -2.4746 32 1 1.6547 0.5362 -2.5251 33 1 1.5173 2.1488 -3.2655 34 1 1.8620 3.1180 1.1769 35 1 0.7284 1.8130 1.6009 36 1 5.2441 -2.1138 5.4862 37 1 4.8350 -1.9671 3.7599 38 1 5.9350 -0.7905 4.5174 39 1 5.0974 0.8042 6.1871 40 1 3.3546 0.9460 6.5196 41 1 4.9072 -0.7496 10.6214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383153843.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:08 Heat of formation + Delta-G solvation = 39.422960 kcal Electronic energy + Delta-G solvation = -20585.390953 eV Core-core repulsion = 17502.689532 eV Total energy + Delta-G solvation = -3082.701421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.56682 -39.61600 -37.58730 -36.59828 -34.54504 -32.88286 -32.16293 -31.03668 -29.52745 -27.37953 -26.17585 -25.05400 -24.48425 -23.43374 -21.38254 -20.55101 -19.15726 -19.04723 -18.19731 -17.08269 -16.96046 -16.46685 -16.07244 -15.82008 -15.29383 -15.17385 -14.65526 -14.02177 -13.93918 -13.82907 -13.63682 -13.25077 -13.21889 -13.07556 -12.95980 -12.78393 -12.60764 -12.51363 -12.35161 -12.11562 -12.01857 -11.96007 -11.89845 -11.69526 -11.55782 -11.33153 -10.83892 -10.73797 -9.40012 -8.26303 -6.29499 0.13881 1.16400 1.36533 1.39906 1.49397 1.85517 2.37101 2.52092 3.00355 3.04718 3.09155 3.86294 3.98099 4.01570 4.11348 4.19757 4.24027 4.26107 4.37081 4.44340 4.51940 4.56464 4.64241 4.78486 4.80946 4.86274 4.93979 4.96899 5.04006 5.07947 5.11218 5.17231 5.21876 5.32725 5.40434 5.46370 5.61573 5.88676 6.04219 6.27404 6.77001 7.15916 7.34305 8.89087 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.036065 B = 0.003900 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.197206 B = 7177.015945 C = 7396.555464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.046 3.954 3 N -0.547 5.547 4 C 0.046 3.954 5 C -0.144 4.144 6 C 0.145 3.855 7 C 0.177 3.823 8 N -0.397 5.397 9 O 0.062 5.938 10 C 0.208 3.792 11 C 0.017 3.983 12 H 0.110 0.890 13 C -0.130 4.130 14 C -0.004 4.004 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.016 3.984 18 N -0.943 5.943 19 Si 0.932 3.068 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.251 1.251 23 N -0.502 5.502 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.030 0.970 40 H 0.014 0.986 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 5.729 -22.435 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.081 4.081 3 N -0.272 5.272 4 C -0.080 4.080 5 C -0.202 4.202 6 C 0.016 3.984 7 C -0.097 4.097 8 N -0.109 5.109 9 O 0.008 5.992 10 C -0.012 4.012 11 C -0.003 4.003 12 H 0.128 0.872 13 C -0.188 4.188 14 C -0.042 4.042 15 C -0.554 4.554 16 H 0.074 0.926 17 C -0.182 4.182 18 N -0.584 5.584 19 Si 0.756 3.244 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.175 1.175 23 N -0.236 5.236 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.032 0.968 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.921 6.275 -22.922 24.753 hybrid contribution -0.533 0.440 1.144 1.336 sum -7.454 6.714 -21.779 23.978 Atomic orbital electron populations 1.22308 0.96410 1.03056 1.02279 1.22183 0.94385 0.89220 1.02333 1.62069 1.60189 1.03183 1.01783 1.22256 0.98099 0.97710 0.89942 1.21753 1.01420 1.01373 0.95628 1.20370 0.93463 0.99236 0.85323 1.26175 0.92666 0.92716 0.98133 1.74569 1.11691 1.18925 1.05689 1.85272 1.40625 1.37233 1.36098 1.29356 0.83636 0.91657 0.96510 1.19882 1.02248 0.91764 0.86420 0.87167 1.21729 0.95774 0.99330 1.02006 1.19597 0.96998 0.95773 0.91833 1.21193 1.47693 0.94441 0.92093 0.92596 1.25745 0.94626 1.01857 0.95972 1.70014 1.50718 1.36567 1.01083 0.85934 0.78596 0.81165 0.78689 1.19730 1.20875 1.17457 1.71939 1.24037 1.19118 1.08537 0.91444 0.92976 0.90756 0.89603 0.92878 0.92543 0.90152 0.93117 0.92532 0.90401 0.87051 0.90014 0.90601 0.91483 0.91949 0.95162 0.96756 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 9.10 71.98 0.66 -2.25 16 2 C 0.05 0.94 5.63 86.30 0.49 1.42 16 3 N -0.55 -11.41 4.63 -900.81 -4.17 -15.58 16 4 C 0.05 0.68 5.30 86.30 0.46 1.13 16 5 C -0.14 -1.85 9.83 71.98 0.71 -1.14 16 6 C 0.15 3.35 5.52 85.56 0.47 3.82 16 7 C 0.18 5.62 7.05 138.46 0.98 6.59 16 8 N -0.40 -13.98 12.16 -60.31 -0.73 -14.71 16 9 O 0.06 2.27 11.31 74.85 0.85 3.12 16 10 C 0.21 7.52 7.02 88.38 0.62 8.14 16 11 C 0.02 0.64 2.81 -11.54 -0.03 0.61 16 12 H 0.11 4.09 8.14 -2.38 -0.02 4.07 16 13 C -0.13 -4.33 8.99 71.98 0.65 -3.68 16 14 C 0.00 -0.16 3.50 29.85 0.10 -0.06 16 15 C -0.52 -27.54 8.96 25.60 0.23 -27.31 16 16 H 0.06 3.18 7.30 -2.91 -0.02 3.16 16 17 C 0.02 0.88 5.47 84.65 0.46 1.35 16 18 N -0.94 -56.80 13.96 21.45 0.30 -56.50 16 19 Si 0.93 43.24 27.47 68.60 1.88 45.13 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 22 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 23 N -0.50 -17.45 11.18 -303.19 -3.39 -20.84 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 0.91 6.28 -2.39 -0.01 0.89 16 26 H 0.07 0.94 6.51 -2.39 -0.02 0.92 16 27 H 0.09 1.56 6.75 -2.39 -0.02 1.55 16 28 H 0.05 1.37 7.12 -2.38 -0.02 1.35 16 29 H 0.06 0.69 5.98 -2.39 -0.01 0.67 16 30 H 0.08 1.09 7.83 -2.39 -0.02 1.07 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.72 6.68 -2.39 -0.02 0.70 16 33 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.11 2.21 7.74 -2.39 -0.02 2.19 16 35 H 0.08 1.72 6.10 -2.39 -0.01 1.71 16 36 H 0.08 2.73 6.95 -2.39 -0.02 2.72 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.03 1.34 7.20 -2.39 -0.02 1.33 16 40 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 41 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -62.87 327.80 1.48 -61.39 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.96 Total: 9.36 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.79 Total: -11.38 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -8.00 Total: -107.63 kcal Atomic # 8 Polarization: 2.27 SS G_CDS: 0.85 Total: 3.12 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.13 kcal Total: -62.87 1.48 -61.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383153843.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.817 kcal (2) G-P(sol) polarization free energy of solvation -62.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds