Wall clock time and date at job start Mon Mar 30 2020 06:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46902 * 109.46893 * 2 1 4 4 C 1.46894 * 111.00184 * 60.31057 * 3 2 1 5 5 C 1.53003 * 109.47035 * 66.04508 * 4 3 2 6 6 C 1.53005 * 109.47209 * 180.02562 * 5 4 3 7 7 C 1.52992 * 109.47426 * 180.02562 * 6 5 4 8 8 C 1.50691 * 109.47665 * 179.97438 * 7 6 5 9 9 H 1.08008 * 119.99451 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00552 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99819 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00137 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47409 * 59.99474 * 12 10 8 14 14 H 1.48498 * 109.47228 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46860 * 299.99464 * 12 10 8 16 16 C 1.46902 * 110.99821 * 296.35438 * 3 2 1 17 17 C 1.50700 * 109.47120 * 288.11565 * 16 3 2 18 18 C 1.33387 * 125.20413 * 95.63563 * 17 16 3 19 19 C 1.38423 * 114.92336 * 179.97438 * 18 17 16 20 20 C 1.33389 * 114.91783 * 0.02562 * 19 18 17 21 21 S 1.75882 * 125.20214 * 275.32415 * 17 16 3 22 22 H 1.08992 * 109.47388 * 60.68443 * 1 2 3 23 23 H 1.09006 * 109.46957 * 180.68682 * 1 2 3 24 24 H 1.09004 * 109.46921 * 300.68180 * 1 2 3 25 25 H 1.08997 * 109.47355 * 240.00221 * 2 1 3 26 26 H 1.09000 * 109.47413 * 119.99891 * 2 1 3 27 27 H 1.09000 * 109.47524 * 186.04566 * 4 3 2 28 28 H 1.09000 * 109.46986 * 306.04688 * 4 3 2 29 29 H 1.09000 * 109.47157 * 299.99836 * 5 4 3 30 30 H 1.09000 * 109.47086 * 60.00242 * 5 4 3 31 31 H 1.09000 * 109.46833 * 299.99919 * 6 5 4 32 32 H 1.08995 * 109.47270 * 59.99673 * 6 5 4 33 33 H 1.09002 * 109.47200 * 300.00348 * 7 6 5 34 34 H 1.09007 * 109.46921 * 59.99610 * 7 6 5 35 35 H 0.96997 * 120.00205 * 180.02562 * 11 10 8 36 36 H 1.08998 * 109.46763 * 48.11931 * 16 3 2 37 37 H 1.09001 * 109.46517 * 168.11762 * 16 3 2 38 38 H 1.08003 * 122.53420 * 359.95682 * 18 17 16 39 39 H 1.08001 * 122.53514 * 180.02562 * 19 18 17 40 40 H 1.08003 * 125.19710 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5546 2.1078 1.1913 5 6 2.1927 1.4961 2.4402 6 6 1.7079 2.2485 3.6812 7 6 2.3464 1.6374 4.9300 8 6 1.8695 2.3787 6.1522 9 1 1.1802 3.2037 6.0485 10 6 2.3139 2.0046 7.4026 11 7 3.1536 1.0004 7.5288 12 14 1.7221 2.9233 8.9177 13 1 0.2442 2.8167 9.0154 14 1 2.3420 2.3301 10.1298 15 1 2.1094 4.3530 8.8123 16 6 1.6210 2.0843 -1.2289 17 6 2.4218 1.5546 -2.3905 18 6 2.0192 0.5997 -3.2303 19 6 2.9267 0.2766 -4.2244 20 6 4.0664 0.9688 -4.1915 21 16 4.0271 2.1065 -2.8508 22 1 -0.3634 0.5031 -0.8960 23 1 -0.3633 -1.0277 0.0123 24 1 -0.3633 0.5244 0.8838 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.8400 3.1569 1.1143 28 1 0.4697 2.0306 1.2627 29 1 1.9073 0.4470 2.5174 30 1 3.2776 1.5733 2.3688 31 1 1.9930 3.2978 3.6043 32 1 0.6231 2.1710 3.7524 33 1 2.0619 0.5880 5.0071 34 1 3.4314 1.7152 4.8585 35 1 3.4660 0.7370 8.4085 36 1 0.5597 1.9182 -1.4134 37 1 1.8074 3.1522 -1.1159 38 1 1.0581 0.1151 -3.1411 39 1 2.7269 -0.4787 -4.9700 40 1 4.8858 0.8522 -4.8854 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385202509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:37 Heat of formation + Delta-G solvation = 17.291835 kcal Electronic energy + Delta-G solvation = -17657.907070 eV Core-core repulsion = 14984.706092 eV Total energy + Delta-G solvation = -2673.200978 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.98216 -37.37169 -34.47168 -32.37455 -31.24925 -29.93378 -27.99822 -25.76308 -24.64354 -23.49547 -22.13595 -20.16630 -19.65789 -19.35301 -17.12495 -16.16197 -16.11008 -15.72570 -15.48923 -14.51495 -14.43127 -13.76480 -13.55698 -13.08932 -12.86774 -12.74887 -12.47502 -12.28580 -12.13411 -11.91734 -11.63476 -11.38986 -11.32208 -10.99074 -10.85246 -10.78742 -10.49083 -10.40425 -10.26500 -9.56711 -9.24348 -9.00887 -8.81773 -8.54969 -8.30226 -8.21429 -5.95282 -3.97525 0.87833 1.55730 1.94946 2.59688 3.35557 3.39784 3.42278 4.02952 4.49534 4.68318 4.91313 4.95188 5.03447 5.23568 5.27617 5.37541 5.39879 5.40560 5.48737 5.50809 5.58867 5.83399 5.89893 5.96431 6.00948 6.14994 6.19421 6.21644 6.31185 6.34479 6.56649 6.85359 7.00679 7.08215 7.13362 7.27607 7.73664 7.90259 8.06050 8.48756 9.09884 9.66113 11.16063 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038243 B = 0.003014 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.979968 B = 9287.697331 C = 9563.768874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.045 3.955 3 N -0.531 5.531 4 C 0.052 3.948 5 C -0.112 4.112 6 C -0.109 4.109 7 C 0.022 3.978 8 C -0.521 4.521 9 H 0.053 0.947 10 C 0.056 3.944 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.115 3.885 17 C -0.154 4.154 18 C -0.145 4.145 19 C -0.135 4.135 20 C -0.225 4.225 21 S 0.120 5.880 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.014 0.986 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.218 -0.648 -24.286 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.083 4.083 3 N -0.254 5.254 4 C -0.075 4.075 5 C -0.150 4.150 6 C -0.147 4.147 7 C -0.015 4.015 8 C -0.559 4.559 9 H 0.071 0.929 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.014 4.014 17 C -0.272 4.272 18 C -0.177 4.177 19 C -0.165 4.165 20 C -0.361 4.361 21 S 0.383 5.617 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.582 0.331 -23.574 23.583 hybrid contribution -2.093 -0.698 0.264 2.222 sum -2.675 -0.366 -23.310 23.466 Atomic orbital electron populations 1.22425 0.98475 1.02390 1.01968 1.22206 0.92714 0.90210 1.03138 1.62251 1.59710 1.02440 1.01038 1.22323 0.97797 0.97805 0.89588 1.21653 1.00824 0.99648 0.92893 1.21594 0.99494 0.98769 0.94835 1.19072 0.95907 0.95900 0.90610 1.21257 1.27000 1.16042 0.91601 0.92856 1.25029 0.95187 0.95204 0.99080 1.69955 1.32573 1.27505 1.23529 0.86679 0.78953 0.80082 0.82404 1.20304 1.21301 1.20258 1.20594 0.95895 0.98079 0.86881 1.24431 0.98521 1.02736 1.01506 1.20098 1.01621 0.99465 0.96467 1.20105 0.93754 1.02092 1.00585 1.25643 1.02934 1.03562 1.03975 1.84395 1.14702 1.38398 1.24162 0.92898 0.92103 0.91763 0.90888 0.89869 0.91135 0.94373 0.92525 0.91717 0.93515 0.93752 0.96783 0.96633 0.93000 0.92364 0.89912 0.84779 0.84688 0.82225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 9.27 37.15 0.34 -1.72 16 2 C 0.05 0.54 5.69 -3.83 -0.02 0.52 16 3 N -0.53 -6.82 4.66 -236.08 -1.10 -7.92 16 4 C 0.05 0.73 4.72 -3.83 -0.02 0.71 16 5 C -0.11 -1.94 5.14 -26.73 -0.14 -2.08 16 6 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 7 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 8 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 9 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 12 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.11 1.26 5.35 -4.97 -0.03 1.23 16 17 C -0.15 -1.66 5.46 -36.00 -0.20 -1.86 16 18 C -0.15 -1.43 9.04 -41.21 -0.37 -1.80 16 19 C -0.13 -1.22 10.18 -41.21 -0.42 -1.64 16 20 C -0.23 -2.06 11.23 29.04 0.33 -1.73 16 21 S 0.12 1.26 23.33 -107.50 -2.51 -1.25 16 22 H 0.05 0.51 6.29 -51.93 -0.33 0.18 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.76 6.25 -51.93 -0.32 0.44 16 25 H 0.07 0.84 6.61 -51.93 -0.34 0.50 16 26 H 0.08 1.10 6.46 -51.93 -0.34 0.77 16 27 H 0.07 0.97 7.86 -51.93 -0.41 0.56 16 28 H 0.04 0.52 5.99 -51.93 -0.31 0.21 16 29 H 0.06 0.98 6.55 -51.93 -0.34 0.64 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.06 0.59 5.92 -51.93 -0.31 0.28 16 37 H 0.08 0.88 7.81 -51.93 -0.41 0.47 16 38 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -30.59 331.71 -10.55 -41.14 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -6.45 Total: -3.03 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -1.21 Total: -24.16 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: -0.36 Total: -34.65 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.51 Total: -1.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.59 -10.55 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385202509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.431 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds