Wall clock time and date at job start Mon Mar 30 2020 06:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46692 * 2 1 4 4 C 1.50702 * 109.47055 * 240.00547 * 2 1 3 5 5 C 1.33388 * 125.20547 * 100.00234 * 4 2 1 6 6 C 1.38421 * 114.92066 * 180.29144 * 5 4 2 7 7 C 1.33395 * 114.92147 * 359.48238 * 6 5 4 8 8 S 1.75885 * 125.19995 * 280.01589 * 4 2 1 9 9 N 1.46900 * 109.47499 * 120.00061 * 2 1 3 10 10 C 1.46896 * 111.00022 * 176.04707 * 9 2 1 11 11 C 1.46906 * 110.99796 * 300.00296 * 9 2 1 12 12 C 1.52997 * 109.46780 * 169.99703 * 11 9 2 13 13 C 1.53003 * 109.47059 * 180.02562 * 12 11 9 14 14 C 1.52991 * 109.47283 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47377 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99580 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00200 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99850 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00094 * 0.02562 * 17 15 14 20 20 H 1.48508 * 109.46915 * 89.99797 * 19 17 15 21 21 H 1.48493 * 109.47304 * 209.99858 * 19 17 15 22 22 H 1.48496 * 109.47262 * 330.00170 * 19 17 15 23 23 H 1.08993 * 109.47322 * 299.99441 * 1 2 3 24 24 H 1.08995 * 109.47260 * 60.00182 * 1 2 3 25 25 H 1.09004 * 109.46692 * 179.97438 * 1 2 3 26 26 H 1.08002 * 122.53671 * 0.02562 * 5 4 2 27 27 H 1.08001 * 122.54223 * 179.72513 * 6 5 4 28 28 H 1.07998 * 125.20353 * 180.21324 * 7 6 5 29 29 H 1.08999 * 109.47188 * 60.00312 * 10 9 2 30 30 H 1.09001 * 109.46933 * 179.97438 * 10 9 2 31 31 H 1.08989 * 109.47188 * 300.00098 * 10 9 2 32 32 H 1.08995 * 109.46954 * 289.99735 * 11 9 2 33 33 H 1.09001 * 109.46791 * 49.99852 * 11 9 2 34 34 H 1.08995 * 109.47403 * 299.99757 * 12 11 9 35 35 H 1.09001 * 109.47336 * 60.00483 * 12 11 9 36 36 H 1.09004 * 109.46835 * 300.00373 * 13 12 11 37 37 H 1.09006 * 109.47297 * 59.99729 * 13 12 11 38 38 H 1.09004 * 109.47338 * 299.99879 * 14 13 12 39 39 H 1.09003 * 109.47717 * 59.99890 * 14 13 12 40 40 H 0.96997 * 119.99956 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.4672 -0.1116 -2.3404 6 6 2.8747 -0.9716 -3.3456 7 6 2.7811 -2.2685 -3.0480 8 16 2.1346 -2.4556 -1.4230 9 7 2.0198 -0.6925 1.1994 10 6 3.4852 -0.7945 1.1869 11 6 1.5487 -0.0264 2.4211 12 6 1.8628 -0.9044 3.6341 13 6 1.3716 -0.2110 4.9064 14 6 1.6862 -1.0886 6.1194 15 6 1.2030 -0.4054 7.3727 16 1 0.7194 0.5584 7.3102 17 6 1.3773 -1.0110 8.5991 18 7 0.9551 -0.4149 9.6928 19 14 2.2130 -2.6781 8.7072 20 1 3.6768 -2.4883 8.8711 21 1 1.6772 -3.4258 9.8729 22 1 1.9496 -3.4454 7.4634 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 2.4949 0.9626 -2.4482 27 1 3.2444 -0.6192 -4.2972 28 1 3.0557 -3.0797 -3.7060 29 1 3.9187 0.2052 1.1591 30 1 3.8211 -1.3108 2.0862 31 1 3.8030 -1.3530 0.3067 32 1 2.0519 0.9345 2.5280 33 1 0.4723 0.1323 2.3563 34 1 1.3596 -1.8653 3.5271 35 1 2.9392 -1.0631 3.6988 36 1 1.8744 0.7502 5.0136 37 1 0.2951 -0.0525 4.8415 38 1 1.1837 -2.0500 6.0125 39 1 2.7628 -1.2466 6.1843 40 1 1.0774 -0.8411 10.5555 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385243008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:36 Heat of formation + Delta-G solvation = 21.842809 kcal Electronic energy + Delta-G solvation = -17736.971241 eV Core-core repulsion = 15063.967607 eV Total energy + Delta-G solvation = -2673.003633 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.02361 -37.35300 -34.69982 -32.61698 -31.49949 -29.33333 -28.60677 -25.86731 -24.76103 -23.72952 -21.73034 -20.36562 -20.00959 -19.42609 -17.23920 -16.59533 -16.06057 -15.58607 -15.07928 -14.56084 -14.39130 -14.05179 -13.65864 -13.06247 -12.90344 -12.67268 -12.56849 -12.39296 -12.19332 -11.95303 -11.83332 -11.62951 -11.57881 -11.27318 -10.98684 -10.77230 -10.68537 -10.38264 -9.82580 -9.63825 -9.47650 -9.12198 -8.83131 -8.53911 -8.49869 -8.38751 -6.00673 -3.98113 0.83085 1.51524 1.94823 2.54788 3.33803 3.41025 3.46005 3.81676 4.45390 4.49136 4.87234 4.98096 5.07777 5.12739 5.29019 5.33340 5.35503 5.36224 5.52168 5.54772 5.62637 5.66838 5.86433 5.87585 5.92026 6.03830 6.06427 6.11053 6.17644 6.26995 6.42451 6.68451 6.80444 6.92669 7.02389 7.11726 7.37631 7.50846 7.84791 8.58704 9.04672 9.62490 11.12987 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039360 B = 0.003242 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.207833 B = 8633.445285 C = 9004.394117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.148 3.852 3 H 0.056 0.944 4 C -0.161 4.161 5 C -0.148 4.148 6 C -0.136 4.136 7 C -0.234 4.234 8 S 0.145 5.855 9 N -0.537 5.537 10 C 0.017 3.983 11 C 0.052 3.948 12 C -0.116 4.116 13 C -0.101 4.101 14 C -0.013 4.013 15 C -0.519 4.519 16 H 0.070 0.930 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.265 1.265 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.160 0.840 29 H 0.024 0.976 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.009 0.991 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -1.424 -27.125 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.038 3.962 3 H 0.074 0.926 4 C -0.280 4.280 5 C -0.179 4.179 6 C -0.166 4.166 7 C -0.370 4.370 8 S 0.409 5.591 9 N -0.262 5.262 10 C -0.131 4.131 11 C -0.075 4.075 12 C -0.154 4.154 13 C -0.139 4.139 14 C -0.051 4.051 15 C -0.557 4.557 16 H 0.088 0.912 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.189 1.189 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.178 0.822 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.028 0.972 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.721 -3.175 -26.030 26.364 hybrid contribution 1.215 1.216 -0.763 1.880 sum 3.936 -1.959 -26.793 27.151 Atomic orbital electron populations 1.21939 0.92928 1.03216 1.02166 1.20095 0.95767 0.94340 0.86045 0.92580 1.24539 1.06863 0.96959 0.99590 1.20076 1.03524 1.01060 0.93196 1.20083 1.03600 0.92370 1.00588 1.25797 1.09526 1.00614 1.01071 1.84597 1.61590 1.03919 1.09003 1.62130 1.10672 1.51933 1.01467 1.22516 0.87186 1.00228 1.03167 1.22323 1.00722 0.95660 0.88776 1.21703 1.01044 0.99240 0.93379 1.21421 1.00139 0.98969 0.93392 1.19561 0.96012 0.95694 0.93820 1.21195 1.38513 1.06275 0.89740 0.91150 1.25053 0.95259 0.97594 0.95752 1.69925 1.47594 1.38909 0.98122 0.86760 0.79886 0.84783 0.77764 1.20374 1.21456 1.18930 0.91314 0.92043 0.91434 0.84718 0.84734 0.82249 0.95781 0.90485 0.91442 0.94857 0.90244 0.91648 0.92536 0.93126 0.92845 0.96645 0.97248 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.97 37.16 0.33 -1.11 16 2 C 0.15 1.59 2.50 -68.86 -0.17 1.42 16 3 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 4 C -0.16 -1.68 4.09 -36.00 -0.15 -1.83 16 5 C -0.15 -1.39 10.04 -41.21 -0.41 -1.80 16 6 C -0.14 -1.17 10.18 -41.21 -0.42 -1.59 16 7 C -0.23 -2.05 11.23 29.04 0.33 -1.72 16 8 S 0.14 1.49 21.94 -107.50 -2.36 -0.87 16 9 N -0.54 -6.66 4.41 -236.29 -1.04 -7.70 16 10 C 0.02 0.21 8.99 60.06 0.54 0.75 16 11 C 0.05 0.70 4.77 -3.82 -0.02 0.69 16 12 C -0.12 -1.87 5.15 -26.73 -0.14 -2.01 16 13 C -0.10 -2.00 5.15 -26.73 -0.14 -2.14 16 14 C -0.01 -0.33 4.04 -27.89 -0.11 -0.44 16 15 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 16 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -28.44 13.96 55.43 0.77 -27.67 16 19 Si 0.88 22.17 27.47 -169.99 -4.67 17.51 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 23 H 0.07 0.68 6.20 -51.93 -0.32 0.36 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 27 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 28 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.95 6.30 -51.93 -0.33 0.63 16 31 H 0.07 0.77 6.05 -51.94 -0.31 0.46 16 32 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.08 1.03 5.83 -51.93 -0.30 0.73 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.90 6.47 -51.93 -0.34 0.57 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 39 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -31.01 329.96 -9.72 -40.73 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -6.60 Total: -3.52 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -0.79 Total: -23.43 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.27 Total: -35.37 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.51 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.36 Total: -0.87 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.01 -9.72 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385243008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.568 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds