Wall clock time and date at job start Mon Mar 30 2020 06:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46962 * 2 1 4 4 C 1.50693 * 109.47544 * 120.00187 * 2 1 3 5 5 C 1.33385 * 125.20831 * 255.33985 * 4 2 1 6 6 C 1.38425 * 114.92501 * 179.97438 * 5 4 2 7 7 C 1.33378 * 114.92142 * 0.02562 * 6 5 4 8 8 S 1.75885 * 109.59549 * 359.97438 * 7 6 5 9 9 N 1.46903 * 109.47114 * 240.00708 * 2 1 3 10 10 C 1.46900 * 111.00314 * 57.12300 * 9 2 1 11 11 C 1.46907 * 110.99847 * 181.07929 * 9 2 1 12 12 C 1.53002 * 109.47009 * 169.99561 * 11 9 2 13 13 C 1.53000 * 109.47264 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47293 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47121 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00064 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00053 * 179.97438 * 15 14 13 18 18 N 1.31525 * 119.99664 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00139 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47150 * 59.99967 * 19 17 15 21 21 H 1.48497 * 109.46949 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46960 * 299.99806 * 19 17 15 23 23 H 1.09001 * 109.46962 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47188 * 299.99384 * 1 2 3 25 25 H 1.08998 * 109.47465 * 60.00068 * 1 2 3 26 26 H 1.08001 * 122.53678 * 359.95647 * 5 4 2 27 27 H 1.08007 * 122.53511 * 180.02562 * 6 5 4 28 28 H 1.08000 * 125.20652 * 180.26825 * 7 6 5 29 29 H 1.09002 * 109.46815 * 62.63565 * 10 9 2 30 30 H 1.09000 * 109.46817 * 182.63470 * 10 9 2 31 31 H 1.09002 * 109.46732 * 302.63746 * 10 9 2 32 32 H 1.08996 * 109.46581 * 289.99519 * 11 9 2 33 33 H 1.08996 * 109.47343 * 49.99930 * 11 9 2 34 34 H 1.09003 * 109.47132 * 300.00077 * 12 11 9 35 35 H 1.09004 * 109.46795 * 59.99733 * 12 11 9 36 36 H 1.08998 * 109.47041 * 300.00591 * 13 12 11 37 37 H 1.08997 * 109.46466 * 59.99868 * 13 12 11 38 38 H 1.09003 * 109.46890 * 300.00239 * 14 13 12 39 39 H 1.09001 * 109.47458 * 59.99643 * 14 13 12 40 40 H 0.96998 * 119.99269 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 2.5488 -0.1139 2.3058 6 6 2.9434 -0.9734 3.3166 7 6 2.7480 -2.2679 3.0618 8 16 2.0272 -2.4532 1.4681 9 7 2.0196 -0.6924 -1.1995 10 6 1.4933 -0.0670 -2.4201 11 6 3.4880 -0.7343 -1.2206 12 6 3.9554 -1.6683 -2.3387 13 6 5.4847 -1.7116 -2.3611 14 6 5.9521 -2.6450 -3.4796 15 6 7.4584 -2.6880 -3.5012 16 1 8.0255 -2.1074 -2.7888 17 6 8.1124 -3.4688 -4.4306 18 7 7.4217 -4.1763 -5.2979 19 14 9.9795 -3.5216 -4.4579 20 1 10.4796 -4.0229 -3.1526 21 1 10.4331 -4.4277 -5.5434 22 1 10.5098 -2.1558 -4.6998 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 2.6516 0.9585 2.3821 27 1 3.3768 -0.6222 4.2415 28 1 2.9904 -3.0782 3.7333 29 1 1.8521 0.9601 -2.4859 30 1 1.8335 -0.6273 -3.2911 31 1 0.4037 -0.0700 -2.3890 32 1 3.8775 0.2681 -1.3978 33 1 3.8547 -1.1026 -0.2626 34 1 3.5658 -2.6707 -2.1615 35 1 3.5886 -1.3000 -3.2968 36 1 5.8739 -0.7090 -2.5385 37 1 5.8517 -2.0795 -1.4031 38 1 5.5628 -3.6476 -3.3026 39 1 5.5850 -2.2766 -4.4375 40 1 7.8819 -4.7258 -5.9515 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385243011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:39 Heat of formation + Delta-G solvation = 18.077032 kcal Electronic energy + Delta-G solvation = -17923.973220 eV Core-core repulsion = 15250.806290 eV Total energy + Delta-G solvation = -2673.166930 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.92952 -37.16488 -34.61740 -32.66084 -31.27269 -29.20041 -27.81590 -26.45883 -24.37529 -23.60744 -21.56887 -20.46603 -19.94606 -19.35101 -17.15262 -16.16304 -15.96776 -15.50780 -14.84190 -14.52346 -14.33130 -14.20535 -13.48722 -12.90551 -12.77032 -12.53174 -12.40985 -12.26285 -12.09209 -11.83772 -11.63868 -11.62704 -11.27332 -11.12363 -10.90011 -10.61325 -10.47058 -10.42933 -10.28570 -9.55039 -9.21163 -8.97345 -8.67596 -8.37530 -8.31598 -8.28058 -5.93912 -3.95874 0.99554 1.68485 2.11427 2.70574 3.36683 3.40677 3.43453 3.90638 4.50219 4.53504 5.01302 5.04726 5.11741 5.20334 5.40973 5.41326 5.42500 5.49067 5.57733 5.59749 5.64749 5.72891 5.91215 5.98381 6.02903 6.08576 6.20770 6.26157 6.32106 6.42673 6.58374 6.87728 7.02470 7.09293 7.12803 7.28785 7.75336 7.92141 8.07577 8.50616 9.11381 9.67619 11.17442 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022801 B = 0.003917 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.742837 B = 7145.767734 C = 7869.652806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.148 3.852 3 H 0.055 0.945 4 C -0.165 4.165 5 C -0.147 4.147 6 C -0.137 4.137 7 C -0.230 4.230 8 S 0.149 5.851 9 N -0.537 5.537 10 C 0.019 3.981 11 C 0.054 3.946 12 C -0.111 4.111 13 C -0.109 4.109 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.053 0.947 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.160 0.840 29 H 0.024 0.976 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.201 8.431 14.554 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.038 3.962 3 H 0.072 0.928 4 C -0.283 4.283 5 C -0.178 4.178 6 C -0.168 4.168 7 C -0.366 4.366 8 S 0.414 5.586 9 N -0.262 5.262 10 C -0.128 4.128 11 C -0.074 4.074 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.015 4.015 15 C -0.558 4.558 16 H 0.071 0.929 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.151 0.849 27 H 0.152 0.848 28 H 0.178 0.822 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.822 6.572 13.557 21.848 hybrid contribution 1.961 1.969 0.822 2.898 sum -13.861 8.540 14.379 21.722 Atomic orbital electron populations 1.21935 0.93277 1.03031 1.01897 1.20063 0.95373 0.94328 0.86431 0.92760 1.24462 1.07028 0.97130 0.99695 1.20056 1.03031 1.00975 0.93721 1.20060 1.03677 0.92403 1.00671 1.25782 1.08899 1.00644 1.01319 1.84564 1.59491 1.03917 1.10641 1.62138 1.10120 1.52717 1.01214 1.22491 1.00302 0.97105 0.92942 1.22306 0.85318 0.98767 1.00961 1.21652 0.97521 0.99162 0.96593 1.21589 0.92093 1.00290 1.00707 1.19075 0.95542 0.94158 0.92691 1.21258 0.92137 1.26623 1.15776 0.92876 1.25025 0.98182 0.95616 0.95646 1.69966 1.35302 1.29163 1.19167 0.86682 0.86024 0.77861 0.77578 1.20264 1.21301 1.20312 0.91484 0.92057 0.91752 0.84855 0.84753 0.82203 0.95751 0.90339 0.91274 0.95229 0.90797 0.91674 0.92601 0.93812 0.93525 0.96602 0.96786 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.85 37.16 0.33 -1.01 16 2 C 0.15 1.68 2.51 -68.87 -0.17 1.50 16 3 H 0.05 0.60 8.11 -51.93 -0.42 0.18 16 4 C -0.16 -1.97 3.77 -36.01 -0.14 -2.10 16 5 C -0.15 -1.62 10.03 -41.21 -0.41 -2.04 16 6 C -0.14 -1.46 10.18 -41.21 -0.42 -1.88 16 7 C -0.23 -2.51 11.23 29.03 0.33 -2.18 16 8 S 0.15 1.83 22.85 -107.50 -2.46 -0.63 16 9 N -0.54 -7.04 4.48 -236.28 -1.06 -8.09 16 10 C 0.02 0.23 8.97 60.06 0.54 0.76 16 11 C 0.05 0.82 4.79 -3.82 -0.02 0.80 16 12 C -0.11 -1.99 5.14 -26.73 -0.14 -2.13 16 13 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 14 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.65 5.46 -17.81 -0.10 1.55 16 18 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 19 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.53 6.30 -51.93 -0.33 0.20 16 26 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 27 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 28 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.98 6.41 -51.93 -0.33 0.65 16 31 H 0.07 0.67 6.10 -51.93 -0.32 0.36 16 32 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.07 1.17 6.45 -51.93 -0.33 0.84 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.99 6.53 -51.93 -0.34 0.65 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -30.95 335.02 -10.23 -41.18 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -6.69 Total: -3.56 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -0.79 Total: -24.21 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: -0.32 Total: -34.92 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.46 Total: -0.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.95 -10.23 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385243011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.256 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds