Wall clock time and date at job start Mon Mar 30 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46962 * 2 1 4 4 C 1.50693 * 109.47544 * 120.00187 * 2 1 3 5 5 C 1.33385 * 125.20831 * 255.33985 * 4 2 1 6 6 C 1.38425 * 114.92501 * 179.97438 * 5 4 2 7 7 C 1.33378 * 114.92142 * 0.02562 * 6 5 4 8 8 S 1.75885 * 109.59549 * 359.97438 * 7 6 5 9 9 N 1.46903 * 109.47114 * 240.00708 * 2 1 3 10 10 C 1.46900 * 111.00314 * 57.12300 * 9 2 1 11 11 C 1.46907 * 110.99847 * 181.07929 * 9 2 1 12 12 C 1.53002 * 109.47009 * 169.99561 * 11 9 2 13 13 C 1.53000 * 109.47264 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47293 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47121 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00064 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00053 * 179.97438 * 15 14 13 18 18 N 1.31525 * 119.99664 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00139 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47150 * 59.99967 * 19 17 15 21 21 H 1.48497 * 109.46949 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46960 * 299.99806 * 19 17 15 23 23 H 1.09001 * 109.46962 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47188 * 299.99384 * 1 2 3 25 25 H 1.08998 * 109.47465 * 60.00068 * 1 2 3 26 26 H 1.08001 * 122.53678 * 359.95647 * 5 4 2 27 27 H 1.08007 * 122.53511 * 180.02562 * 6 5 4 28 28 H 1.08000 * 125.20652 * 180.26825 * 7 6 5 29 29 H 1.09002 * 109.46815 * 62.63565 * 10 9 2 30 30 H 1.09000 * 109.46817 * 182.63470 * 10 9 2 31 31 H 1.09002 * 109.46732 * 302.63746 * 10 9 2 32 32 H 1.08996 * 109.46581 * 289.99519 * 11 9 2 33 33 H 1.08996 * 109.47343 * 49.99930 * 11 9 2 34 34 H 1.09003 * 109.47132 * 300.00077 * 12 11 9 35 35 H 1.09004 * 109.46795 * 59.99733 * 12 11 9 36 36 H 1.08998 * 109.47041 * 300.00591 * 13 12 11 37 37 H 1.08997 * 109.46466 * 59.99868 * 13 12 11 38 38 H 1.09003 * 109.46890 * 300.00239 * 14 13 12 39 39 H 1.09001 * 109.47458 * 59.99643 * 14 13 12 40 40 H 0.96998 * 119.99269 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 2.5488 -0.1139 2.3058 6 6 2.9434 -0.9734 3.3166 7 6 2.7480 -2.2679 3.0618 8 16 2.0272 -2.4532 1.4681 9 7 2.0196 -0.6924 -1.1995 10 6 1.4933 -0.0670 -2.4201 11 6 3.4880 -0.7343 -1.2206 12 6 3.9554 -1.6683 -2.3387 13 6 5.4847 -1.7116 -2.3611 14 6 5.9521 -2.6450 -3.4796 15 6 7.4584 -2.6880 -3.5012 16 1 8.0255 -2.1074 -2.7888 17 6 8.1124 -3.4688 -4.4306 18 7 7.4217 -4.1763 -5.2979 19 14 9.9795 -3.5216 -4.4579 20 1 10.4796 -4.0229 -3.1526 21 1 10.4331 -4.4277 -5.5434 22 1 10.5098 -2.1558 -4.6998 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 2.6516 0.9585 2.3821 27 1 3.3768 -0.6222 4.2415 28 1 2.9904 -3.0782 3.7333 29 1 1.8521 0.9601 -2.4859 30 1 1.8335 -0.6273 -3.2911 31 1 0.4037 -0.0700 -2.3890 32 1 3.8775 0.2681 -1.3978 33 1 3.8547 -1.1026 -0.2626 34 1 3.5658 -2.6707 -2.1615 35 1 3.5886 -1.3000 -3.2968 36 1 5.8739 -0.7090 -2.5385 37 1 5.8517 -2.0795 -1.4031 38 1 5.5628 -3.6476 -3.3026 39 1 5.5850 -2.2766 -4.4375 40 1 7.8819 -4.7258 -5.9515 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385243011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:38 Heat of formation + Delta-G solvation = 1.064295 kcal Electronic energy + Delta-G solvation = -17924.710947 eV Core-core repulsion = 15250.806290 eV Total energy + Delta-G solvation = -2673.904657 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88542 -38.11163 -36.35285 -34.48821 -32.58239 -30.46938 -29.07159 -27.61412 -25.99673 -24.60192 -23.04519 -21.68752 -21.50528 -20.17960 -18.42885 -18.05657 -16.99511 -16.55657 -16.41716 -16.05342 -15.59848 -15.18070 -14.63470 -14.40078 -13.87141 -13.81662 -13.58557 -13.49967 -13.24012 -13.05538 -12.92295 -12.79049 -12.64797 -12.52458 -12.26829 -12.18089 -12.04467 -11.88693 -11.47148 -11.34141 -11.27695 -10.99000 -10.54562 -9.52999 -9.32344 -9.28279 -8.19309 -6.30910 0.14535 0.81653 1.26118 1.39245 1.42831 1.50815 1.88271 2.41169 2.91109 3.13205 3.66800 4.02739 4.14374 4.23509 4.27678 4.31862 4.45210 4.55948 4.56714 4.65517 4.68455 4.72746 4.82383 4.84338 4.89938 4.97705 5.09402 5.21145 5.22697 5.27243 5.30072 5.37079 5.42418 5.54650 5.61601 5.77352 5.86566 6.07826 6.13441 6.26499 6.85900 7.38207 8.92438 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022801 B = 0.003917 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.742837 B = 7145.767734 C = 7869.652806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.148 3.852 3 H 0.062 0.938 4 C -0.174 4.174 5 C -0.148 4.148 6 C -0.142 4.142 7 C -0.231 4.231 8 S 0.102 5.898 9 N -0.547 5.547 10 C 0.019 3.981 11 C 0.068 3.932 12 C -0.100 4.100 13 C -0.095 4.095 14 C 0.026 3.974 15 C -0.546 4.546 16 H 0.058 0.942 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.266 1.266 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.152 0.848 27 H 0.158 0.842 28 H 0.178 0.822 29 H 0.032 0.968 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.046 0.954 38 H -0.012 1.012 39 H -0.010 1.010 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.814 9.878 15.833 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.038 3.962 3 H 0.080 0.920 4 C -0.292 4.292 5 C -0.179 4.179 6 C -0.172 4.172 7 C -0.367 4.367 8 S 0.366 5.634 9 N -0.271 5.271 10 C -0.129 4.129 11 C -0.060 4.060 12 C -0.138 4.138 13 C -0.134 4.134 14 C -0.012 4.012 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.191 1.191 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.169 0.831 27 H 0.176 0.824 28 H 0.195 0.805 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.007 0.993 39 H 0.009 0.991 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.451 8.033 14.850 22.886 hybrid contribution 1.802 1.515 0.443 2.395 sum -13.649 9.548 15.293 22.612 Atomic orbital electron populations 1.21902 0.91734 1.02776 1.03144 1.20159 0.96543 0.94215 0.85242 0.92013 1.24580 1.07845 0.96424 1.00376 1.20361 1.02113 1.02027 0.93432 1.20385 1.03197 0.92178 1.01431 1.26024 1.08604 1.01552 1.00512 1.84708 1.60754 1.05408 1.12572 1.62069 1.08536 1.53943 1.02581 1.22527 1.01532 0.97065 0.91735 1.22007 0.87039 0.97833 0.99089 1.21462 0.94872 0.99431 0.98024 1.21385 0.94603 0.98962 0.98411 1.18990 0.94863 0.93816 0.93485 1.21700 0.93423 1.27053 1.16215 0.92334 1.26006 1.03911 0.94933 0.95007 1.70105 1.37659 1.29796 1.19842 0.85499 0.79095 0.78416 0.78034 1.19177 1.20669 1.19097 0.92467 0.90777 0.90522 0.83074 0.82447 0.80487 0.94984 0.91745 0.89247 0.94889 0.91447 0.92904 0.92541 0.93277 0.93535 0.99321 0.99139 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.85 71.98 0.64 -1.66 16 2 C 0.15 3.09 2.51 44.16 0.11 3.20 16 3 H 0.06 1.22 8.11 -2.39 -0.02 1.20 16 4 C -0.17 -3.92 3.77 24.58 0.09 -3.83 16 5 C -0.15 -2.98 10.03 21.22 0.21 -2.77 16 6 C -0.14 -2.71 10.18 21.21 0.22 -2.49 16 7 C -0.23 -4.75 11.23 66.72 0.75 -4.00 16 8 S 0.10 2.47 22.85 -56.49 -1.29 1.18 16 9 N -0.55 -13.74 4.48 -901.46 -4.04 -17.78 16 10 C 0.02 0.41 8.97 127.69 1.15 1.56 16 11 C 0.07 2.02 4.79 86.30 0.41 2.44 16 12 C -0.10 -3.61 5.14 30.59 0.16 -3.45 16 13 C -0.10 -4.14 5.15 30.59 0.16 -3.98 16 14 C 0.03 1.41 4.97 29.85 0.15 1.56 16 15 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 18 N -0.93 -58.35 13.29 21.45 0.28 -58.06 16 19 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.08 1.07 6.30 -2.39 -0.02 1.06 16 26 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 27 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 1.58 6.41 -2.39 -0.02 1.56 16 31 H 0.09 1.57 6.10 -2.39 -0.01 1.55 16 32 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 33 H 0.07 2.10 6.45 -2.39 -0.02 2.08 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 2.02 6.53 -2.38 -0.02 2.00 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H -0.01 -0.70 8.14 -2.39 -0.02 -0.71 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -66.58 335.02 2.70 -63.88 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.99 Total: 8.60 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 4.74 Total: -45.04 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -3.76 Total: -75.85 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.29 Total: 1.18 kcal Total: -66.58 2.70 -63.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385243011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.943 kcal (2) G-P(sol) polarization free energy of solvation -66.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds