Wall clock time and date at job start Mon Mar 30 2020 07:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99861 * 3 2 1 5 5 H 1.48501 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48506 * 109.47147 * 149.99518 * 3 2 1 7 7 C 1.37880 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.47108 * 111.00000 * 66.04795 * 13 12 11 15 15 C 1.53042 * 109.47450 * 181.91246 * 14 13 12 16 16 O 1.43108 * 109.49337 * 303.66369 * 15 14 13 17 17 C 1.42873 * 113.44804 * 58.39707 * 16 15 14 18 18 H 1.08998 * 109.44868 * 60.54486 * 17 16 15 19 19 C 1.52894 * 110.15948 * 180.93520 * 17 16 15 20 20 C 1.53081 * 109.22918 * 180.36997 * 19 17 16 21 21 C 1.52950 * 109.69305 * 300.24153 * 20 19 17 22 22 C 1.53089 * 109.67545 * 59.48628 * 21 20 19 23 23 C 1.46867 * 110.99963 * 189.33888 * 13 12 11 24 24 H 1.08998 * 109.45371 * 297.10265 * 23 13 12 25 25 H 0.97000 * 120.00500 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 27 27 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 28 28 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 29 29 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 30 30 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 31 31 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 32 32 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 33 33 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 34 34 H 1.08999 * 109.46699 * 301.91433 * 14 13 12 35 35 H 1.08993 * 109.47048 * 61.90747 * 14 13 12 36 36 H 1.09002 * 109.46780 * 63.67003 * 15 14 13 37 37 H 1.08997 * 109.46682 * 183.65836 * 15 14 13 38 38 H 1.08993 * 109.50997 * 300.29784 * 19 17 16 39 39 H 1.08998 * 109.50702 * 60.40065 * 19 17 16 40 40 H 1.09006 * 109.43017 * 60.31121 * 20 19 17 41 41 H 1.09005 * 109.43480 * 180.21460 * 20 19 17 42 42 H 1.08997 * 109.43867 * 179.54795 * 21 20 19 43 43 H 1.09000 * 109.43610 * 299.46452 * 21 20 19 44 44 H 1.08994 * 109.51044 * 60.15105 * 22 21 20 45 45 H 1.08999 * 109.51069 * 180.25181 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 7 7.5306 -4.0789 0.0033 14 6 8.0573 -3.5211 1.2585 15 6 9.5865 -3.4934 1.2026 16 8 10.0787 -4.8118 0.9422 17 6 9.5861 -5.3722 -0.2762 18 1 9.8926 -4.7458 -1.1138 19 6 10.1388 -6.7848 -0.4677 20 6 9.6057 -7.3609 -1.7820 21 6 8.0774 -7.4068 -1.7423 22 6 7.5245 -5.9941 -1.5369 23 6 8.0571 -5.4319 -0.2187 24 1 7.7497 -6.0802 0.6019 25 1 -0.4851 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8912 27 1 3.8752 -0.6803 -0.8888 28 1 3.6587 -3.1501 -0.8893 29 1 3.6579 -3.1505 0.8907 30 1 5.9142 -2.1229 0.8927 31 1 5.9156 -2.1222 -0.8872 32 1 5.6990 -4.5929 -0.8875 33 1 5.6976 -4.5927 0.8925 34 1 7.6802 -2.5071 1.3918 35 1 7.7354 -4.1413 2.0950 36 1 9.9088 -2.8216 0.4070 37 1 9.9785 -3.1411 2.1566 38 1 11.2276 -6.7482 -0.5013 39 1 9.8211 -7.4157 0.3625 40 1 9.9283 -6.7312 -2.6112 41 1 9.9948 -8.3697 -1.9201 42 1 7.7021 -7.8100 -2.6828 43 1 7.7550 -8.0451 -0.9197 44 1 7.8431 -5.3552 -2.3604 45 1 6.4356 -6.0305 -1.5045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385245033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:15 Heat of formation + Delta-G solvation = -71.533817 kcal Electronic energy + Delta-G solvation = -21050.992531 eV Core-core repulsion = 18067.020007 eV Total energy + Delta-G solvation = -2983.972524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49038 -36.80309 -36.67179 -34.29648 -32.21822 -30.68050 -30.45273 -29.46772 -26.89861 -24.46783 -23.72409 -22.46056 -21.20485 -20.31429 -20.23455 -19.96990 -16.91291 -16.60399 -16.16490 -15.58870 -15.46223 -15.05891 -14.54704 -14.28084 -14.06310 -13.71274 -13.66011 -13.48928 -12.88662 -12.68625 -12.38354 -12.28944 -11.82160 -11.66973 -11.59955 -11.46140 -11.23301 -11.06722 -10.81924 -10.81014 -10.67713 -10.40805 -10.31324 -9.88445 -9.69383 -9.64598 -9.38416 -9.13535 -8.51464 -8.40040 -6.02148 -3.99737 3.32454 3.39484 3.43815 3.51203 3.67991 4.39107 4.47475 4.56690 4.70108 4.79188 4.88972 4.97858 5.04857 5.10084 5.13891 5.17154 5.24380 5.31948 5.39749 5.45449 5.51059 5.59359 5.63028 5.68084 5.76944 5.79617 5.83022 5.88026 5.89886 5.97567 6.03345 6.15346 6.17008 6.38790 6.65290 6.76914 6.89674 6.93861 7.05439 7.09617 7.35328 7.48325 7.83003 8.57105 9.03128 9.60858 11.11505 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031671 B = 0.003536 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.877053 B = 7916.471100 C = 8529.910993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.101 4.101 11 C -0.116 4.116 12 C 0.052 3.948 13 N -0.533 5.533 14 C 0.014 3.986 15 C 0.065 3.935 16 O -0.385 6.385 17 C 0.099 3.901 18 H 0.065 0.935 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.115 4.115 23 C 0.055 3.945 24 H 0.046 0.954 25 H 0.262 0.738 26 H 0.014 0.986 27 H 0.011 0.989 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.083 -13.378 -1.303 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.154 4.154 12 C -0.075 4.075 13 N -0.258 5.258 14 C -0.114 4.114 15 C -0.012 4.012 16 O -0.304 6.304 17 C 0.041 3.959 18 H 0.083 0.917 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.053 4.053 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.211 -13.055 -1.559 25.811 hybrid contribution -0.268 0.653 0.594 0.923 sum 21.944 -12.401 -0.965 25.224 Atomic orbital electron populations 1.69921 1.06318 1.26836 1.51433 1.25053 0.94736 0.99221 0.94633 0.86756 0.80335 0.83564 0.78499 1.20300 1.21451 1.19028 1.21191 0.89700 0.94394 1.50500 0.91144 1.19561 0.96937 0.92447 0.96112 1.21421 0.91809 0.99810 1.00898 1.21697 0.97327 0.94435 1.01902 1.22322 0.85409 0.98868 1.00947 1.62322 1.08951 1.20461 1.34018 1.22840 0.95859 1.01690 0.90979 1.22654 0.92616 0.84279 1.01622 1.87944 1.70106 1.30994 1.41369 1.22120 0.91687 0.94917 0.87210 0.91694 1.21492 1.00850 0.94198 0.98303 1.21508 0.95767 1.01075 0.97025 1.21570 0.95355 0.96836 1.02092 1.21632 1.00874 0.95940 0.96800 1.22228 0.95405 0.89771 0.97947 0.93641 0.92796 0.96814 0.97098 0.92854 0.93092 0.92676 0.91675 0.90213 0.94980 0.88933 0.94137 0.92329 0.88547 0.90999 0.91267 0.91590 0.91334 0.91374 0.91920 0.90825 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.40 13.96 55.43 0.77 -27.62 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.01 5.15 -26.74 -0.14 -2.15 16 11 C -0.12 -1.87 5.14 -26.74 -0.14 -2.01 16 12 C 0.05 0.72 4.73 -3.83 -0.02 0.70 16 13 N -0.53 -6.81 4.57 -226.47 -1.04 -7.85 16 14 C 0.01 0.17 5.42 -3.69 -0.02 0.15 16 15 C 0.07 0.70 7.00 37.18 0.26 0.96 16 16 O -0.39 -4.65 10.52 -35.23 -0.37 -5.03 16 17 C 0.10 1.06 2.63 -26.72 -0.07 0.99 16 18 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 19 C -0.11 -0.95 5.62 -26.74 -0.15 -1.10 16 20 C -0.12 -0.84 5.91 -26.72 -0.16 -1.00 16 21 C -0.12 -0.95 5.92 -26.71 -0.16 -1.11 16 22 C -0.11 -1.14 4.97 -26.74 -0.13 -1.27 16 23 C 0.06 0.63 1.79 -67.73 -0.12 0.51 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.88 6.51 -51.93 -0.34 0.54 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.07 5.82 -51.93 -0.30 0.77 16 33 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 34 H 0.09 1.11 6.39 -51.93 -0.33 0.77 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.75 6.21 -51.93 -0.32 0.43 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -31.24 336.97 -10.02 -41.26 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -8.41 Total: -3.85 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -1.39 Total: -19.43 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.26 Total: -35.48 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.37 Total: -5.03 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.24 -10.02 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385245033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.274 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds