Wall clock time and date at job start Mon Mar 30 2020 07:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47117 * 269.99861 * 3 2 1 5 5 H 1.48501 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48506 * 109.47147 * 149.99518 * 3 2 1 7 7 C 1.37880 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47482 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.47108 * 111.00000 * 66.04795 * 13 12 11 15 15 C 1.53042 * 109.47450 * 181.91246 * 14 13 12 16 16 O 1.43108 * 109.49337 * 303.66369 * 15 14 13 17 17 C 1.42873 * 113.44804 * 58.39707 * 16 15 14 18 18 H 1.08998 * 109.44868 * 60.54486 * 17 16 15 19 19 C 1.52894 * 110.15948 * 180.93520 * 17 16 15 20 20 C 1.53081 * 109.22918 * 180.36997 * 19 17 16 21 21 C 1.52950 * 109.69305 * 300.24153 * 20 19 17 22 22 C 1.53089 * 109.67545 * 59.48628 * 21 20 19 23 23 C 1.46867 * 110.99963 * 189.33888 * 13 12 11 24 24 H 1.08998 * 109.45371 * 297.10265 * 23 13 12 25 25 H 0.97000 * 120.00500 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 27 27 H 1.09001 * 109.46927 * 300.00378 * 9 7 2 28 28 H 1.09002 * 109.47153 * 60.00002 * 10 9 7 29 29 H 1.09001 * 109.46832 * 300.00193 * 10 9 7 30 30 H 1.09002 * 109.47103 * 59.99753 * 11 10 9 31 31 H 1.08998 * 109.46862 * 300.00565 * 11 10 9 32 32 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 33 33 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 34 34 H 1.08999 * 109.46699 * 301.91433 * 14 13 12 35 35 H 1.08993 * 109.47048 * 61.90747 * 14 13 12 36 36 H 1.09002 * 109.46780 * 63.67003 * 15 14 13 37 37 H 1.08997 * 109.46682 * 183.65836 * 15 14 13 38 38 H 1.08993 * 109.50997 * 300.29784 * 19 17 16 39 39 H 1.08998 * 109.50702 * 60.40065 * 19 17 16 40 40 H 1.09006 * 109.43017 * 60.31121 * 20 19 17 41 41 H 1.09005 * 109.43480 * 180.21460 * 20 19 17 42 42 H 1.08997 * 109.43867 * 179.54795 * 21 20 19 43 43 H 1.09000 * 109.43610 * 299.46452 * 21 20 19 44 44 H 1.08994 * 109.51044 * 60.15105 * 22 21 20 45 45 H 1.08999 * 109.51069 * 180.25181 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0789 0.0028 13 7 7.5306 -4.0789 0.0033 14 6 8.0573 -3.5211 1.2585 15 6 9.5865 -3.4934 1.2026 16 8 10.0787 -4.8118 0.9422 17 6 9.5861 -5.3722 -0.2762 18 1 9.8926 -4.7458 -1.1138 19 6 10.1388 -6.7848 -0.4677 20 6 9.6057 -7.3609 -1.7820 21 6 8.0774 -7.4068 -1.7423 22 6 7.5245 -5.9941 -1.5369 23 6 8.0571 -5.4319 -0.2187 24 1 7.7497 -6.0802 0.6019 25 1 -0.4851 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8912 27 1 3.8752 -0.6803 -0.8888 28 1 3.6587 -3.1501 -0.8893 29 1 3.6579 -3.1505 0.8907 30 1 5.9142 -2.1229 0.8927 31 1 5.9156 -2.1222 -0.8872 32 1 5.6990 -4.5929 -0.8875 33 1 5.6976 -4.5927 0.8925 34 1 7.6802 -2.5071 1.3918 35 1 7.7354 -4.1413 2.0950 36 1 9.9088 -2.8216 0.4070 37 1 9.9785 -3.1411 2.1566 38 1 11.2276 -6.7482 -0.5013 39 1 9.8211 -7.4157 0.3625 40 1 9.9283 -6.7312 -2.6112 41 1 9.9948 -8.3697 -1.9201 42 1 7.7021 -7.8100 -2.6828 43 1 7.7550 -8.0451 -0.9197 44 1 7.8431 -5.3552 -2.3604 45 1 6.4356 -6.0305 -1.5045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385245033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:15 Heat of formation + Delta-G solvation = -90.905142 kcal Electronic energy + Delta-G solvation = -21051.832534 eV Core-core repulsion = 18067.020007 eV Total energy + Delta-G solvation = -2984.812528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36353 -37.81361 -37.54491 -35.95803 -34.19223 -31.48320 -31.33169 -30.92201 -28.19233 -25.88050 -24.62738 -23.55213 -22.35390 -21.73671 -21.25237 -20.93935 -18.87423 -17.71744 -17.09969 -16.61913 -16.45720 -16.25499 -15.98127 -15.59535 -15.19212 -14.72213 -14.64448 -14.49858 -14.27605 -13.96429 -13.70510 -13.59714 -13.08872 -13.07324 -12.76661 -12.47570 -12.30386 -12.23405 -11.99295 -11.86356 -11.76239 -11.52674 -11.48376 -11.39630 -11.27577 -11.16233 -11.15125 -10.77059 -10.42250 -9.41957 -8.30407 -6.34666 1.35468 1.37295 1.49753 2.35924 2.66398 2.76667 3.04943 3.59149 3.78674 3.89133 3.98437 4.04250 4.12367 4.13756 4.25475 4.28718 4.33863 4.38631 4.46873 4.49308 4.49917 4.56336 4.70342 4.76215 4.79330 4.85190 4.90974 4.97284 5.04230 5.11433 5.14027 5.16299 5.18449 5.22506 5.25388 5.31252 5.47151 5.55557 5.62626 5.67432 5.97162 5.99992 6.20727 6.28420 6.73631 7.30218 8.86654 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031671 B = 0.003536 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.877053 B = 7916.471100 C = 8529.910993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.029 0.971 9 C -0.011 4.011 10 C -0.094 4.094 11 C -0.102 4.102 12 C 0.059 3.941 13 N -0.538 5.538 14 C 0.012 3.988 15 C 0.066 3.934 16 O -0.399 6.399 17 C 0.097 3.903 18 H 0.062 0.938 19 C -0.107 4.107 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.113 4.113 23 C 0.056 3.944 24 H 0.033 0.967 25 H 0.266 0.734 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.027 0.973 34 H 0.093 0.907 35 H 0.033 0.967 36 H 0.061 0.939 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.644 -13.102 -1.697 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.132 4.132 11 C -0.140 4.140 12 C -0.068 4.068 13 N -0.262 5.262 14 C -0.116 4.116 15 C -0.011 4.011 16 O -0.318 6.318 17 C 0.039 3.961 18 H 0.080 0.920 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.151 4.151 23 C -0.052 4.052 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.045 0.955 34 H 0.111 0.889 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.791 -12.800 -1.954 27.969 hybrid contribution -1.138 0.497 0.729 1.440 sum 23.652 -12.303 -1.226 26.689 Atomic orbital electron populations 1.70078 1.08371 1.28203 1.52792 1.26084 0.95667 1.03732 0.94081 0.85599 0.79450 0.77954 0.79289 1.19041 1.20918 1.16958 1.21568 0.92418 0.93039 1.50313 0.95238 1.19525 0.93597 0.95318 0.96389 1.21285 0.94556 0.96981 1.00415 1.21504 0.94247 0.96069 1.02205 1.22146 0.86472 0.97227 1.00957 1.62325 1.07950 1.21487 1.34484 1.22895 0.96891 1.01432 0.90353 1.22747 0.91586 0.83937 1.02805 1.87935 1.70332 1.31605 1.41956 1.22234 0.91076 0.96054 0.86691 0.91965 1.21511 1.01272 0.92797 0.98956 1.21500 0.95037 1.02076 0.96273 1.21564 0.95947 0.95383 1.02678 1.21626 1.00408 0.97179 0.95848 1.22283 0.96025 0.88719 0.98207 0.94877 0.92487 0.96368 0.96352 0.93296 0.93785 0.92143 0.91516 0.89831 0.95508 0.88869 0.94875 0.92022 0.86647 0.90243 0.91686 0.91155 0.89577 0.90184 0.92010 0.91063 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.00 0.04 5.47 84.65 0.46 0.51 16 3 Si 0.95 45.02 27.47 68.60 1.88 46.91 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 7 C -0.54 -31.77 9.66 25.60 0.25 -31.52 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 10 C -0.09 -3.71 5.15 30.59 0.16 -3.55 16 11 C -0.10 -3.17 5.14 30.59 0.16 -3.01 16 12 C 0.06 1.60 4.73 86.30 0.41 2.00 16 13 N -0.54 -13.12 4.57 -870.42 -3.98 -17.10 16 14 C 0.01 0.28 5.42 86.28 0.47 0.75 16 15 C 0.07 1.30 7.00 72.00 0.50 1.80 16 16 O -0.40 -9.05 10.52 -148.98 -1.57 -10.62 16 17 C 0.10 1.95 2.63 30.60 0.08 2.03 16 18 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 19 C -0.11 -1.65 5.62 30.59 0.17 -1.48 16 20 C -0.11 -1.34 5.91 30.60 0.18 -1.16 16 21 C -0.12 -1.65 5.92 30.61 0.18 -1.46 16 22 C -0.11 -2.10 4.97 30.59 0.15 -1.95 16 23 C 0.06 1.22 1.79 44.93 0.08 1.30 16 24 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 26 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 27 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.81 6.51 -2.39 -0.02 1.80 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.08 2.18 5.82 -2.39 -0.01 2.17 16 33 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 34 H 0.09 2.08 6.39 -2.39 -0.02 2.06 16 35 H 0.03 0.79 8.14 -2.39 -0.02 0.78 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.06 1.28 6.21 -2.39 -0.01 1.27 16 Total: -1.00 -67.41 336.97 0.87 -66.54 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.87 Total: 11.18 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 3.37 Total: -36.16 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -3.68 Total: -77.85 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.57 Total: -10.62 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -67.41 0.87 -66.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385245033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.365 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds