Wall clock time and date at job start Mon Mar 30 2020 07:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47379 * 179.97438 * 12 11 10 14 14 C 1.47096 * 110.99871 * 293.29257 * 13 12 11 15 15 C 1.53047 * 109.47627 * 178.09348 * 14 13 12 16 16 O 1.43113 * 109.49275 * 56.32831 * 15 14 13 17 17 C 1.42866 * 113.44787 * 301.59905 * 16 15 14 18 18 H 1.09002 * 109.45365 * 299.39564 * 17 16 15 19 19 C 1.52887 * 110.10895 * 179.03697 * 17 16 15 20 20 C 1.53075 * 109.24042 * 179.67654 * 19 17 16 21 21 C 1.52955 * 109.68864 * 59.76092 * 20 19 17 22 22 C 1.53235 * 109.65555 * 300.47897 * 21 20 19 23 23 C 1.46868 * 111.00103 * 169.99747 * 13 12 11 24 24 H 1.09000 * 109.45486 * 62.89514 * 23 13 12 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 27 27 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 28 28 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 29 29 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 31 31 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 32 32 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 33 33 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 34 34 H 1.08999 * 109.47325 * 298.09158 * 14 13 12 35 35 H 1.08998 * 109.47549 * 58.09508 * 14 13 12 36 36 H 1.09003 * 109.46712 * 296.32325 * 15 14 13 37 37 H 1.08995 * 109.46572 * 176.33270 * 15 14 13 38 38 H 1.09005 * 109.50629 * 299.60829 * 19 17 16 39 39 H 1.09001 * 109.50833 * 59.69492 * 19 17 16 40 40 H 1.08995 * 109.43655 * 179.82641 * 20 19 17 41 41 H 1.09003 * 109.43139 * 299.74027 * 20 19 17 42 42 H 1.09004 * 109.43489 * 60.57422 * 21 20 19 43 43 H 1.08997 * 109.43937 * 180.44964 * 21 20 19 44 44 H 1.09005 * 109.60525 * 299.89627 * 22 21 20 45 45 H 1.09001 * 109.49147 * 179.69877 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 7 1.7403 -7.4222 0.0031 14 6 1.0069 -7.6062 1.2648 15 6 0.2180 -8.9166 1.2100 16 8 1.1110 -10.0005 0.9345 17 6 1.8299 -9.8474 -0.2906 18 1 1.1255 -9.7964 -1.1209 19 6 2.7750 -11.0313 -0.4968 20 6 3.5283 -10.8513 -1.8172 21 6 4.3326 -9.5509 -1.7786 22 6 3.3863 -8.3658 -1.5593 23 6 2.6465 -8.5533 -0.2344 24 1 3.3701 -8.6156 0.5784 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6242 -2.5567 0.8904 27 1 0.6248 -2.5571 -0.8896 28 1 2.8720 -3.6043 -0.8895 29 1 2.8721 -3.6042 0.8905 30 1 0.8542 -5.0446 0.8914 31 1 0.8534 -5.0451 -0.8886 32 1 3.1014 -6.0927 -0.8882 33 1 3.1014 -6.0917 0.8918 34 1 1.7135 -7.6420 2.0939 35 1 0.3185 -6.7736 1.4097 36 1 -0.5332 -8.8557 0.4225 37 1 -0.2732 -9.0852 2.1683 38 1 3.4884 -11.0752 0.3262 39 1 2.1987 -11.9559 -0.5287 40 1 4.2055 -11.6923 -1.9660 41 1 2.8140 -10.8109 -2.6396 42 1 5.0546 -9.5951 -0.9631 43 1 4.8608 -9.4229 -2.7233 44 1 2.6651 -8.3178 -2.3753 45 1 3.9627 -7.4413 -1.5268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385245039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:24 Heat of formation + Delta-G solvation = -79.022913 kcal Electronic energy + Delta-G solvation = -21028.294245 eV Core-core repulsion = 18043.996969 eV Total energy + Delta-G solvation = -2984.297276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48334 -36.79362 -36.66343 -34.43494 -32.31089 -30.67401 -30.42499 -28.97606 -26.50367 -24.22732 -23.67727 -22.55185 -21.38009 -20.49755 -20.22407 -20.09898 -16.87855 -16.64011 -16.15503 -15.58197 -15.45062 -15.05418 -14.52618 -14.14931 -13.74712 -13.70085 -13.66794 -13.49497 -12.88590 -12.78971 -12.45642 -12.28673 -11.89547 -11.62056 -11.46382 -11.23085 -11.11173 -10.90230 -10.80651 -10.69382 -10.65707 -10.41635 -10.34017 -10.09944 -9.74070 -9.70989 -9.47044 -8.48557 -8.38874 -8.29114 -6.32773 -4.01271 3.45088 3.47376 3.52044 3.66074 3.68620 4.39168 4.56491 4.57588 4.70345 4.79739 4.89316 4.98362 5.05067 5.10694 5.14785 5.17260 5.24352 5.39871 5.44859 5.46015 5.51802 5.59748 5.63616 5.69229 5.77022 5.79996 5.83657 5.88140 5.89883 5.97845 6.04475 6.15359 6.19026 6.40909 6.68116 6.82585 6.92751 6.95427 7.06956 7.12060 7.46395 7.60048 8.26971 8.50372 8.92722 9.71212 11.07977 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033430 B = 0.003319 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.359442 B = 8434.721391 C = 9063.908151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.009 3.991 10 C -0.102 4.102 11 C -0.114 4.114 12 C 0.052 3.948 13 N -0.533 5.533 14 C 0.015 3.985 15 C 0.065 3.935 16 O -0.385 6.385 17 C 0.099 3.901 18 H 0.065 0.935 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.115 4.115 23 C 0.055 3.945 24 H 0.045 0.955 25 H 0.268 0.732 26 H 0.005 0.995 27 H 0.006 0.994 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.527 -23.189 -1.364 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.640 4.640 8 H 0.066 0.934 9 C -0.028 4.028 10 C -0.140 4.140 11 C -0.151 4.151 12 C -0.075 4.075 13 N -0.257 5.257 14 C -0.113 4.113 15 C -0.012 4.012 16 O -0.304 6.304 17 C 0.041 3.959 18 H 0.083 0.917 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.054 4.054 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.023 0.977 27 H 0.025 0.975 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.009 -21.683 -1.621 22.313 hybrid contribution 0.748 -1.347 0.615 1.659 sum 5.757 -23.030 -1.005 23.760 Atomic orbital electron populations 1.70777 1.06882 1.30579 1.46866 1.25860 0.96588 1.02742 0.93877 0.83554 0.74890 0.75392 0.76474 1.20765 1.21463 1.21494 1.22093 0.94251 0.92212 1.55485 0.93450 1.19208 0.94644 0.93148 0.95821 1.21466 0.98824 0.93452 1.00275 1.21674 0.97919 0.93662 1.01886 1.22321 0.96108 0.88244 1.00791 1.62312 1.27856 1.02090 1.33466 1.22837 0.98507 0.99150 0.90839 1.22658 0.91605 0.85320 1.01580 1.87943 1.57514 1.44142 1.40816 1.22118 0.93043 0.93688 0.87073 0.91669 1.21492 0.97902 0.97235 0.98213 1.21505 0.99033 0.97841 0.96994 1.21595 0.97908 0.94284 1.02046 1.21664 0.98349 0.98487 0.96748 1.22233 0.93813 0.91454 0.97869 0.93683 0.92120 0.97687 0.97532 0.93289 0.93551 0.92723 0.91733 0.90312 0.95104 0.94186 0.88932 0.92283 0.88507 0.91285 0.90968 0.91320 0.91578 0.91933 0.91395 0.90788 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.71 13.65 55.43 0.76 -27.95 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.60 -17.69 9.11 -34.44 -0.31 -18.00 16 8 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 9 C 0.01 0.23 4.28 -27.88 -0.12 0.11 16 10 C -0.10 -2.15 5.15 -26.73 -0.14 -2.29 16 11 C -0.11 -1.97 5.16 -26.73 -0.14 -2.11 16 12 C 0.05 0.77 4.74 -3.83 -0.02 0.75 16 13 N -0.53 -7.14 4.57 -226.47 -1.03 -8.17 16 14 C 0.01 0.19 5.42 -3.69 -0.02 0.17 16 15 C 0.07 0.73 7.00 37.18 0.26 0.99 16 16 O -0.39 -4.80 10.51 -35.23 -0.37 -5.17 16 17 C 0.10 1.10 2.63 -26.72 -0.07 1.03 16 18 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.11 -0.98 5.61 -26.75 -0.15 -1.13 16 20 C -0.12 -0.86 5.92 -26.72 -0.16 -1.02 16 21 C -0.12 -0.98 5.92 -26.63 -0.16 -1.14 16 22 C -0.11 -1.18 4.98 -26.67 -0.13 -1.31 16 23 C 0.06 0.65 1.78 -67.72 -0.12 0.53 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.27 8.39 7.22 -40.82 -0.29 8.10 16 26 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 27 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.94 6.53 -51.93 -0.34 0.61 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.11 5.79 -51.93 -0.30 0.81 16 33 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.18 6.41 -51.93 -0.33 0.85 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.77 6.20 -51.93 -0.32 0.45 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -31.66 339.29 -10.38 -42.04 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -8.39 Total: -3.42 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -1.37 Total: -23.15 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.28 Total: -36.13 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.37 Total: -5.17 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.66 -10.38 -42.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385245039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.980 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds