Wall clock time and date at job start Mon Mar 30 2020 07:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47379 * 179.97438 * 12 11 10 14 14 C 1.47096 * 110.99871 * 293.29257 * 13 12 11 15 15 C 1.53047 * 109.47627 * 178.09348 * 14 13 12 16 16 O 1.43113 * 109.49275 * 56.32831 * 15 14 13 17 17 C 1.42866 * 113.44787 * 301.59905 * 16 15 14 18 18 H 1.09002 * 109.45365 * 299.39564 * 17 16 15 19 19 C 1.52887 * 110.10895 * 179.03697 * 17 16 15 20 20 C 1.53075 * 109.24042 * 179.67654 * 19 17 16 21 21 C 1.52955 * 109.68864 * 59.76092 * 20 19 17 22 22 C 1.53235 * 109.65555 * 300.47897 * 21 20 19 23 23 C 1.46868 * 111.00103 * 169.99747 * 13 12 11 24 24 H 1.09000 * 109.45486 * 62.89514 * 23 13 12 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 27 27 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 28 28 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 29 29 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 31 31 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 32 32 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 33 33 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 34 34 H 1.08999 * 109.47325 * 298.09158 * 14 13 12 35 35 H 1.08998 * 109.47549 * 58.09508 * 14 13 12 36 36 H 1.09003 * 109.46712 * 296.32325 * 15 14 13 37 37 H 1.08995 * 109.46572 * 176.33270 * 15 14 13 38 38 H 1.09005 * 109.50629 * 299.60829 * 19 17 16 39 39 H 1.09001 * 109.50833 * 59.69492 * 19 17 16 40 40 H 1.08995 * 109.43655 * 179.82641 * 20 19 17 41 41 H 1.09003 * 109.43139 * 299.74027 * 20 19 17 42 42 H 1.09004 * 109.43489 * 60.57422 * 21 20 19 43 43 H 1.08997 * 109.43937 * 180.44964 * 21 20 19 44 44 H 1.09005 * 109.60525 * 299.89627 * 22 21 20 45 45 H 1.09001 * 109.49147 * 179.69877 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 7 1.7403 -7.4222 0.0031 14 6 1.0069 -7.6062 1.2648 15 6 0.2180 -8.9166 1.2100 16 8 1.1110 -10.0005 0.9345 17 6 1.8299 -9.8474 -0.2906 18 1 1.1255 -9.7964 -1.1209 19 6 2.7750 -11.0313 -0.4968 20 6 3.5283 -10.8513 -1.8172 21 6 4.3326 -9.5509 -1.7786 22 6 3.3863 -8.3658 -1.5593 23 6 2.6465 -8.5533 -0.2344 24 1 3.3701 -8.6156 0.5784 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6242 -2.5567 0.8904 27 1 0.6248 -2.5571 -0.8896 28 1 2.8720 -3.6043 -0.8895 29 1 2.8721 -3.6042 0.8905 30 1 0.8542 -5.0446 0.8914 31 1 0.8534 -5.0451 -0.8886 32 1 3.1014 -6.0927 -0.8882 33 1 3.1014 -6.0917 0.8918 34 1 1.7135 -7.6420 2.0939 35 1 0.3185 -6.7736 1.4097 36 1 -0.5332 -8.8557 0.4225 37 1 -0.2732 -9.0852 2.1683 38 1 3.4884 -11.0752 0.3262 39 1 2.1987 -11.9559 -0.5287 40 1 4.2055 -11.6923 -1.9660 41 1 2.8140 -10.8109 -2.6396 42 1 5.0546 -9.5951 -0.9631 43 1 4.8608 -9.4229 -2.7233 44 1 2.6651 -8.3178 -2.3753 45 1 3.9627 -7.4413 -1.5268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385245039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:23 Heat of formation + Delta-G solvation = -98.069939 kcal Electronic energy + Delta-G solvation = -21029.120186 eV Core-core repulsion = 18043.996969 eV Total energy + Delta-G solvation = -2985.123217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40606 -37.89908 -37.57184 -36.25702 -34.17659 -31.52357 -31.23415 -30.52493 -27.87901 -25.84361 -24.68873 -23.83453 -22.64304 -21.90343 -21.31754 -20.96732 -18.88435 -17.77262 -17.15170 -16.68904 -16.44440 -16.03295 -15.67250 -15.64550 -15.37699 -14.94414 -14.69709 -14.44714 -14.29599 -14.03448 -13.96297 -13.40657 -13.10516 -12.84585 -12.57206 -12.49114 -12.33510 -12.24254 -12.07740 -12.01897 -11.94606 -11.62909 -11.53714 -11.46905 -11.28182 -11.20780 -10.68914 -10.56110 -10.44531 -9.46927 -8.71209 -6.41706 1.51079 1.60054 1.79557 2.55197 2.62055 2.72461 3.13848 3.55307 3.74241 3.83519 3.94277 3.96706 4.07320 4.08567 4.21857 4.25143 4.28544 4.34402 4.39199 4.44157 4.46179 4.49292 4.63910 4.68877 4.74631 4.78560 4.87337 4.92536 4.99640 5.04168 5.04662 5.13023 5.14438 5.17858 5.22471 5.27981 5.43727 5.45581 5.53089 5.90714 5.95047 5.99785 6.16460 6.16902 6.55884 7.41126 8.69627 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033430 B = 0.003319 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.359442 B = 8434.721391 C = 9063.908151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.042 4.042 3 Si 1.119 2.881 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.623 4.623 8 H 0.051 0.949 9 C 0.008 3.992 10 C -0.090 4.090 11 C -0.101 4.101 12 C 0.063 3.937 13 N -0.540 5.540 14 C 0.013 3.987 15 C 0.067 3.933 16 O -0.397 6.397 17 C 0.097 3.903 18 H 0.061 0.939 19 C -0.107 4.107 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.113 4.113 23 C 0.056 3.944 24 H 0.036 0.964 25 H 0.255 0.745 26 H -0.014 1.014 27 H -0.013 1.013 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.030 0.970 34 H 0.035 0.965 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.029 -24.158 -1.738 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.939 3.061 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.660 4.660 8 H 0.069 0.931 9 C -0.029 4.029 10 C -0.128 4.128 11 C -0.139 4.139 12 C -0.064 4.064 13 N -0.265 5.265 14 C -0.115 4.115 15 C -0.010 4.010 16 O -0.317 6.317 17 C 0.039 3.961 18 H 0.079 0.921 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.052 4.052 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.004 0.996 27 H 0.005 0.995 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.134 0.866 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.517 -22.692 -1.996 23.694 hybrid contribution 0.238 -1.077 0.742 1.329 sum 6.755 -23.769 -1.254 24.742 Atomic orbital electron populations 1.70917 1.07990 1.29816 1.48861 1.27531 0.96640 1.07055 0.92656 0.82926 0.74130 0.70881 0.78118 1.20786 1.19239 1.19325 1.22558 0.94761 0.93622 1.55094 0.93075 1.19176 0.95149 0.94652 0.93888 1.21287 0.97759 0.93315 1.00460 1.21476 0.97982 0.92968 1.01467 1.22111 0.95220 0.87967 1.01122 1.62299 1.28194 1.02082 1.33921 1.22874 0.98389 0.99879 0.90364 1.22729 0.91228 0.84313 1.02722 1.87935 1.57794 1.44497 1.41434 1.22251 0.93171 0.94236 0.86471 0.92113 1.21513 0.97522 0.96475 0.98972 1.21503 0.99180 0.98083 0.96147 1.21587 0.97508 0.93617 1.02764 1.21665 0.98447 0.99347 0.95634 1.22302 0.93510 0.91097 0.98317 0.94636 0.93609 0.99593 0.99468 0.92925 0.93388 0.92911 0.92427 0.89576 0.95217 0.94666 0.89477 0.92187 0.86563 0.91543 0.90210 0.89415 0.91259 0.91827 0.90098 0.91222 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.89 13.65 21.45 0.29 -59.60 16 2 C -0.04 -2.50 5.46 84.65 0.46 -2.04 16 3 Si 1.12 51.12 29.90 68.60 2.05 53.17 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.62 -36.80 9.11 25.60 0.23 -36.57 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.01 0.45 4.28 29.85 0.13 0.58 16 10 C -0.09 -3.80 5.15 30.60 0.16 -3.65 16 11 C -0.10 -3.51 5.16 30.59 0.16 -3.35 16 12 C 0.06 1.81 4.74 86.30 0.41 2.22 16 13 N -0.54 -14.17 4.57 -870.41 -3.97 -18.15 16 14 C 0.01 0.32 5.42 86.28 0.47 0.79 16 15 C 0.07 1.43 7.00 72.00 0.50 1.94 16 16 O -0.40 -9.45 10.51 -148.98 -1.57 -11.01 16 17 C 0.10 2.03 2.63 30.60 0.08 2.11 16 18 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 19 C -0.11 -1.69 5.61 30.58 0.17 -1.52 16 20 C -0.11 -1.38 5.92 30.60 0.18 -1.20 16 21 C -0.12 -1.65 5.92 30.66 0.18 -1.47 16 22 C -0.11 -2.18 4.98 30.64 0.15 -2.02 16 23 C 0.06 1.27 1.78 44.93 0.08 1.35 16 24 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.25 16.47 7.22 -92.71 -0.67 15.80 16 26 H -0.01 -0.82 8.01 -2.39 -0.02 -0.83 16 27 H -0.01 -0.75 8.01 -2.39 -0.02 -0.76 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 1.84 6.53 -2.39 -0.02 1.83 16 31 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.09 2.35 5.79 -2.39 -0.01 2.33 16 33 H 0.03 0.86 8.12 -2.38 -0.02 0.84 16 34 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 2.22 6.41 -2.39 -0.02 2.21 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.06 1.32 6.20 -2.39 -0.01 1.30 16 Total: -1.00 -67.82 339.29 1.19 -66.63 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.02 Total: 11.79 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 3.37 Total: -42.84 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -3.68 Total: -77.74 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.57 Total: -11.01 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.17 kcal Total: -67.82 1.19 -66.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385245039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.437 kcal (2) G-P(sol) polarization free energy of solvation -67.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds