Wall clock time and date at job start Mon Mar 30 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 C 1.50698 * 109.47039 * 179.97438 * 5 4 2 7 7 C 1.34516 * 125.78862 * 89.71983 * 6 5 4 8 8 C 1.41382 * 106.84261 * 179.89298 * 7 6 5 9 9 C 1.34515 * 106.83949 * 0.36933 * 8 7 6 10 10 O 1.34303 * 125.79319 * 270.02907 * 6 5 4 11 11 N 1.46902 * 109.46626 * 120.00063 * 2 1 3 12 12 C 1.46904 * 110.99949 * 274.99434 * 11 2 1 13 13 C 1.52997 * 109.47280 * 180.02562 * 12 11 2 14 14 O 1.42891 * 109.47187 * 65.00260 * 13 12 11 15 15 C 1.42906 * 114.00368 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47189 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00094 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99984 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47099 * 89.99930 * 20 18 16 22 22 H 1.48504 * 109.47032 * 209.99486 * 20 18 16 23 23 H 1.48497 * 109.47338 * 329.99990 * 20 18 16 24 24 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 27 27 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 28 28 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 29 29 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 30 30 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 31 31 H 1.08001 * 126.57404 * 0.02572 * 7 6 5 32 32 H 1.08003 * 126.58031 * 180.17137 * 8 7 6 33 33 H 1.07998 * 125.78762 * 179.79513 * 9 8 7 34 34 H 1.00900 * 110.99581 * 151.04678 * 11 2 1 35 35 H 1.09002 * 109.47300 * 300.00868 * 12 11 2 36 36 H 1.09006 * 109.46967 * 60.00497 * 12 11 2 37 37 H 1.09000 * 109.47386 * 185.00743 * 13 12 11 38 38 H 1.09006 * 109.47270 * 305.00554 * 13 12 11 39 39 H 1.09002 * 109.46571 * 299.99964 * 15 14 13 40 40 H 1.09000 * 109.46835 * 59.99726 * 15 14 13 41 41 H 0.97003 * 120.00183 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0673 -1.3243 -2.5437 7 6 4.2348 -0.7715 -3.7585 8 6 4.7228 -1.7904 -4.6085 9 6 4.8165 -2.9070 -3.8643 10 8 4.4182 -2.6187 -2.6145 11 7 2.0196 -0.6925 1.1995 12 6 2.0825 0.2226 2.3469 13 6 2.5961 -0.5328 3.5742 14 8 3.9444 -0.9484 3.3480 15 6 4.5221 -1.6675 4.4395 16 6 5.9371 -2.0537 4.0939 17 1 6.3536 -1.7780 3.1363 18 6 6.6998 -2.7598 4.9998 19 7 6.1925 -3.0959 6.1657 20 14 8.4536 -3.2392 4.5712 21 1 9.3810 -2.1637 5.0055 22 1 8.8043 -4.5049 5.2643 23 1 8.5699 -3.4301 3.1031 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7517 -1.7715 -1.2055 28 1 1.6055 -0.2618 -2.1370 29 1 3.8532 0.4369 -1.3573 30 1 3.9995 -1.0729 -0.4259 31 1 4.0368 0.2545 -4.0315 32 1 4.9697 -1.6921 -5.6553 33 1 5.1551 -3.8716 -4.2126 34 1 2.9173 -1.1205 1.0288 35 1 2.7589 1.0462 2.1182 36 1 1.0871 0.6164 2.5526 37 1 2.5588 0.1212 4.4454 38 1 1.9708 -1.4082 3.7501 39 1 4.5247 -1.0372 5.3288 40 1 3.9366 -2.5663 4.6329 41 1 6.7291 -3.5924 6.8033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385274398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:24 Heat of formation + Delta-G solvation = -51.206412 kcal Electronic energy + Delta-G solvation = -19968.125790 eV Core-core repulsion = 16849.201633 eV Total energy + Delta-G solvation = -3118.924156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.56816 -38.00033 -36.48408 -33.69171 -32.89319 -32.53876 -31.02378 -28.05266 -27.89096 -26.43070 -23.95585 -22.33992 -21.78021 -21.36307 -20.48691 -20.24051 -17.39733 -16.46061 -16.10822 -15.99817 -15.69520 -15.22762 -14.73867 -14.45127 -14.25670 -13.78427 -13.59588 -13.17225 -12.86095 -12.81120 -12.42854 -12.36828 -12.09147 -12.08008 -11.62287 -11.40422 -11.24091 -10.96848 -10.85095 -10.74428 -10.65777 -10.41681 -9.98352 -9.95522 -9.09509 -8.81221 -8.47311 -8.19102 -8.15590 -6.09699 -4.11410 1.71839 2.56759 2.99508 3.30984 3.36074 3.41579 4.32598 4.36258 4.51310 4.85434 4.88662 4.95980 4.99026 5.05334 5.11638 5.26906 5.40614 5.45603 5.57031 5.60138 5.69714 5.73426 5.75818 5.80839 5.91533 5.95854 6.05114 6.11855 6.16597 6.20719 6.32376 6.39082 6.47356 7.12791 7.13707 7.27717 7.45506 7.68754 7.80134 8.16603 8.58974 9.01621 9.53483 11.01842 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012512 B = 0.004738 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.245351 B = 5908.050808 C = 7898.607964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.082 3.918 3 H 0.043 0.957 4 C -0.116 4.116 5 C -0.051 4.051 6 C 0.004 3.996 7 C -0.220 4.220 8 C -0.217 4.217 9 C -0.046 4.046 10 O -0.171 6.171 11 N -0.685 5.685 12 C 0.066 3.934 13 C 0.061 3.939 14 O -0.400 6.400 15 C 0.198 3.802 16 C -0.514 4.514 17 H 0.065 0.935 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.906 3.094 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.200 0.800 34 H 0.355 0.645 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.046 0.954 39 H 0.004 0.996 40 H 0.006 0.994 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 5.637 -17.950 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 H 0.061 0.939 4 C -0.153 4.153 5 C -0.088 4.088 6 C -0.047 4.047 7 C -0.239 4.239 8 C -0.236 4.236 9 C -0.113 4.113 10 O -0.066 6.066 11 N -0.320 5.320 12 C -0.063 4.063 13 C -0.017 4.017 14 O -0.320 6.320 15 C 0.123 3.877 16 C -0.552 4.552 17 H 0.083 0.917 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.733 3.267 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.196 1.196 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.217 0.783 34 H 0.177 0.823 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.128 5.125 -17.531 20.419 hybrid contribution 1.644 0.238 -0.293 1.687 sum -7.484 5.363 -17.824 20.062 Atomic orbital electron populations 1.21778 0.94653 1.02329 1.00875 1.21520 0.95846 0.95855 0.89601 0.93908 1.21784 0.93344 1.02461 0.97756 1.20289 0.96118 0.99252 0.93139 1.22466 1.02563 0.82014 0.97631 1.21548 1.08405 1.01007 0.92929 1.21795 1.07324 0.93320 1.01145 1.24025 1.04595 1.00777 0.81948 1.84082 1.64145 1.27166 1.31241 1.60568 1.35084 1.32640 1.03752 1.21993 0.99436 0.93947 0.90960 1.22300 0.86312 0.97644 0.95408 1.87775 1.24462 1.75551 1.44199 1.20170 0.93229 0.90025 0.84244 1.21048 0.96624 1.35075 1.02502 0.91653 1.24936 0.99022 0.95691 0.94777 1.69964 1.37214 1.39436 1.07138 0.86362 0.83720 0.77887 0.78684 1.20499 1.21053 1.19624 0.92946 0.91972 0.92765 0.90495 0.91033 0.88962 0.89076 0.83736 0.83717 0.78302 0.82285 0.94819 0.90731 0.94218 0.93562 0.97854 0.97615 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.42 37.16 0.35 -1.06 16 2 C 0.08 0.94 2.65 -67.71 -0.18 0.76 16 3 H 0.04 0.48 7.80 -51.93 -0.40 0.07 16 4 C -0.12 -1.25 4.79 -26.73 -0.13 -1.37 16 5 C -0.05 -0.60 5.58 -27.88 -0.16 -0.75 16 6 C 0.00 0.05 6.58 -35.62 -0.23 -0.19 16 7 C -0.22 -2.53 10.81 -39.70 -0.43 -2.96 16 8 C -0.22 -2.32 10.91 -39.70 -0.43 -2.76 16 9 C -0.05 -0.51 12.09 29.42 0.36 -0.15 16 10 O -0.17 -2.40 10.65 5.71 0.06 -2.34 16 11 N -0.68 -10.01 6.31 -106.72 -0.67 -10.69 16 12 C 0.07 0.99 5.90 -3.82 -0.02 0.97 16 13 C 0.06 1.15 6.28 37.16 0.23 1.38 16 14 O -0.40 -9.54 9.85 -35.23 -0.35 -9.89 16 15 C 0.20 5.46 5.69 36.00 0.20 5.67 16 16 C -0.51 -15.22 9.43 -34.44 -0.32 -15.54 16 17 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 20 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.55 7.45 -51.93 -0.39 0.17 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.25 6.43 -51.93 -0.33 0.91 16 31 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 33 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.36 5.80 6.03 -39.29 -0.24 5.56 16 35 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 36 H 0.07 0.96 7.44 -51.93 -0.39 0.57 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -32.10 343.30 -7.72 -39.82 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.79 Total: 1.75 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -0.86 Total: -14.46 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.06 Total: -37.05 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.29 Total: -12.23 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.10 -7.72 -39.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385274398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.385 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds