Wall clock time and date at job start Mon Mar 30 2020 06:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.53001 * 109.47203 * 119.99641 * 2 1 3 5 5 C 1.53000 * 109.46886 * 184.99990 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.34515 * 125.79060 * 90.00255 * 6 5 4 8 8 C 1.41380 * 106.83832 * 179.97438 * 7 6 5 9 9 C 1.34506 * 106.84493 * 359.97438 * 8 7 6 10 10 O 1.34306 * 125.78568 * 269.69593 * 6 5 4 11 11 N 1.46894 * 109.47135 * 240.00537 * 2 1 3 12 12 C 1.46897 * 111.00560 * 84.99520 * 11 2 1 13 13 C 1.53003 * 109.47138 * 179.97438 * 12 11 2 14 14 O 1.42903 * 109.46838 * 65.00489 * 13 12 11 15 15 C 1.42896 * 113.99817 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47143 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00065 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00237 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99810 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00192 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46921 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47076 * 119.99907 * 20 18 16 23 23 H 1.48504 * 109.47254 * 240.00641 * 20 18 16 24 24 H 1.08996 * 109.47654 * 60.00238 * 1 2 3 25 25 H 1.09005 * 109.47243 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47476 * 299.99962 * 1 2 3 27 27 H 1.09001 * 109.46652 * 65.00335 * 4 2 1 28 28 H 1.08992 * 109.47514 * 305.00424 * 4 2 1 29 29 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 30 30 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 31 31 H 1.07996 * 126.58016 * 0.03378 * 7 6 5 32 32 H 1.08006 * 126.57610 * 179.97438 * 8 7 6 33 33 H 1.08006 * 125.79583 * 179.97438 * 9 8 7 34 34 H 1.00904 * 110.99933 * 208.95423 * 11 2 1 35 35 H 1.08996 * 109.47033 * 300.00382 * 12 11 2 36 36 H 1.08998 * 109.46787 * 60.00044 * 12 11 2 37 37 H 1.09005 * 109.46398 * 184.99731 * 13 12 11 38 38 H 1.08994 * 109.47510 * 305.00112 * 13 12 11 39 39 H 1.09005 * 109.46878 * 299.99535 * 15 14 13 40 40 H 1.08997 * 109.47119 * 59.99734 * 15 14 13 41 41 H 0.97000 * 119.99740 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 6 4.0672 -1.3240 2.5438 7 6 4.4192 -2.6204 2.6147 8 6 4.8278 -2.8616 3.9465 9 6 4.7016 -1.6982 4.6097 10 8 4.2449 -0.7692 3.7540 11 7 2.0196 -0.6924 -1.1995 12 6 2.0823 0.2227 -2.3469 13 6 2.5961 -0.5328 -3.5742 14 8 1.6511 -1.5389 -3.9443 15 6 2.0367 -2.3064 -5.0863 16 6 0.9734 -3.3319 -5.3846 17 1 0.0916 -3.3917 -4.7639 18 6 1.1263 -4.1936 -6.4499 19 7 2.2003 -4.1211 -7.2055 20 14 -0.1914 -5.4652 -6.8193 21 1 -1.2903 -5.3414 -5.8281 22 1 -0.7291 -5.2384 -8.1847 23 1 0.3975 -6.8261 -6.7387 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7516 -1.7714 1.2056 28 1 1.6054 -0.2617 2.1370 29 1 3.9994 -1.0726 0.4259 30 1 3.8531 0.4371 1.3573 31 1 4.3952 -3.3388 1.8087 32 1 5.1747 -3.8001 4.3533 33 1 4.9314 -1.5375 5.6527 34 1 2.9173 -1.1204 -1.0288 35 1 1.0869 0.6164 -2.5525 36 1 2.7587 1.0463 -2.1182 37 1 2.7270 0.1647 -4.4016 38 1 3.5519 -1.0009 -3.3389 39 1 2.1557 -1.6455 -5.9449 40 1 2.9810 -2.8113 -4.8827 41 1 2.3080 -4.7276 -7.9548 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385274399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:27 Heat of formation + Delta-G solvation = -47.576110 kcal Electronic energy + Delta-G solvation = -19691.965687 eV Core-core repulsion = 16573.198952 eV Total energy + Delta-G solvation = -3118.766735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.71156 -38.02933 -36.43714 -33.76873 -32.98797 -32.55167 -31.07530 -28.10591 -27.89811 -26.36246 -24.02528 -22.26312 -21.91488 -21.47055 -20.58092 -20.30964 -17.53814 -16.43875 -16.19046 -16.05916 -15.80181 -15.16205 -14.79849 -14.38373 -14.24178 -14.04757 -13.27266 -13.11676 -12.98468 -12.91248 -12.60937 -12.53584 -12.17301 -12.04178 -11.50566 -11.34975 -11.32601 -11.09004 -10.79879 -10.74190 -10.58372 -10.38610 -10.06855 -9.92618 -9.02190 -8.75991 -8.60232 -8.16382 -8.08132 -6.05918 -4.06534 1.56234 2.46947 2.81593 3.32816 3.39079 3.46410 4.25740 4.39875 4.40951 4.74068 4.78917 4.87185 4.89795 4.97460 5.12434 5.30473 5.30713 5.34314 5.50231 5.64439 5.67370 5.68789 5.73554 5.81696 5.86672 5.95673 5.96608 6.04787 6.13213 6.15399 6.34803 6.36025 6.43513 6.97481 7.15649 7.25773 7.49140 7.59845 7.86646 8.22598 8.67624 9.08825 9.58255 11.05877 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.003218 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.575614 B = 8698.255519 C = 9281.397622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.085 3.915 3 H 0.040 0.960 4 C -0.118 4.118 5 C -0.045 4.045 6 C -0.006 4.006 7 C -0.210 4.210 8 C -0.212 4.212 9 C -0.051 4.051 10 O -0.178 6.178 11 N -0.672 5.672 12 C 0.065 3.935 13 C 0.065 3.935 14 O -0.379 6.379 15 C 0.193 3.807 16 C -0.509 4.509 17 H 0.067 0.933 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.907 3.093 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.200 0.800 34 H 0.337 0.663 35 H 0.078 0.922 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.033 0.967 39 H 0.002 0.998 40 H 0.003 0.997 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.530 8.576 21.196 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.058 0.942 4 C -0.156 4.156 5 C -0.082 4.082 6 C -0.056 4.056 7 C -0.229 4.229 8 C -0.231 4.231 9 C -0.118 4.118 10 O -0.075 6.075 11 N -0.306 5.306 12 C -0.064 4.064 13 C -0.014 4.014 14 O -0.299 6.299 15 C 0.119 3.881 16 C -0.547 4.547 17 H 0.085 0.915 18 C -0.147 4.147 19 N -0.541 5.541 20 Si 0.734 3.266 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.165 0.835 33 H 0.217 0.783 34 H 0.157 0.843 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.020 0.980 40 H 0.021 0.979 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.757 8.513 21.028 22.995 hybrid contribution 0.675 -0.446 -0.201 0.833 sum 4.432 8.067 20.827 22.770 Atomic orbital electron populations 1.21769 0.94286 1.02789 1.00871 1.21521 0.96400 0.95353 0.89201 0.94210 1.21817 0.92978 1.02826 0.97960 1.20251 0.96559 1.00434 0.90961 1.22445 1.04046 0.93243 0.85824 1.21687 1.06710 0.96177 0.98354 1.21864 1.07117 0.99526 0.94568 1.23984 1.04316 0.87582 0.95935 1.84008 1.65614 1.39037 1.18826 1.60408 1.33477 1.33213 1.03501 1.22031 1.01250 0.92881 0.90266 1.22236 0.92761 0.91627 0.94736 1.87961 1.43975 1.47880 1.50052 1.20185 0.96007 0.89707 0.82237 1.21111 1.05561 1.15432 1.12578 0.91454 1.24956 0.96205 0.97736 0.95769 1.69979 1.27263 1.38543 1.18266 0.86296 0.81448 0.80724 0.78131 1.19439 1.20933 1.20893 0.92460 0.91638 0.93129 0.90120 0.91021 0.88691 0.90242 0.83216 0.83534 0.78302 0.84275 0.90343 0.94940 0.94268 0.94880 0.98034 0.97931 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.41 37.15 0.35 -1.29 16 2 C 0.08 0.96 2.65 -67.72 -0.18 0.78 16 3 H 0.04 0.42 7.80 -51.92 -0.40 0.01 16 4 C -0.12 -1.19 4.79 -26.73 -0.13 -1.31 16 5 C -0.04 -0.42 5.58 -27.88 -0.16 -0.58 16 6 C -0.01 -0.06 6.57 -35.62 -0.23 -0.29 16 7 C -0.21 -2.30 10.81 -39.70 -0.43 -2.73 16 8 C -0.21 -2.05 10.91 -39.71 -0.43 -2.48 16 9 C -0.05 -0.45 12.09 29.41 0.36 -0.10 16 10 O -0.18 -1.97 10.65 5.68 0.06 -1.91 16 11 N -0.67 -9.52 6.26 -106.73 -0.67 -10.19 16 12 C 0.06 0.95 5.87 -3.82 -0.02 0.93 16 13 C 0.06 1.20 6.22 37.16 0.23 1.43 16 14 O -0.38 -9.31 10.27 -35.23 -0.36 -9.68 16 15 C 0.19 5.40 5.69 36.01 0.20 5.60 16 16 C -0.51 -15.28 9.43 -34.44 -0.32 -15.61 16 17 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 20 Si 0.91 22.21 29.54 -169.99 -5.02 17.19 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.87 6.43 -51.93 -0.33 0.54 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.20 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.34 4.43 6.47 -39.29 -0.25 4.18 16 35 H 0.08 1.21 7.44 -51.93 -0.39 0.82 16 36 H 0.03 0.39 8.05 -51.93 -0.42 -0.02 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 40 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -33.18 344.02 -7.73 -40.91 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.80 Total: -0.73 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -0.86 Total: -14.16 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.07 Total: -36.81 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.30 Total: -11.59 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.18 -7.73 -40.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385274399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.663 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds