Wall clock time and date at job start Mon Mar 30 2020 06:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.53001 * 109.47203 * 119.99641 * 2 1 3 5 5 C 1.53000 * 109.46886 * 184.99990 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.34515 * 125.79060 * 90.00255 * 6 5 4 8 8 C 1.41380 * 106.83832 * 179.97438 * 7 6 5 9 9 C 1.34506 * 106.84493 * 359.97438 * 8 7 6 10 10 O 1.34306 * 125.78568 * 269.69593 * 6 5 4 11 11 N 1.46894 * 109.47135 * 240.00537 * 2 1 3 12 12 C 1.46897 * 111.00560 * 84.99520 * 11 2 1 13 13 C 1.53003 * 109.47138 * 179.97438 * 12 11 2 14 14 O 1.42903 * 109.46838 * 65.00489 * 13 12 11 15 15 C 1.42896 * 113.99817 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47143 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00065 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00237 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99810 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00192 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46921 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47076 * 119.99907 * 20 18 16 23 23 H 1.48504 * 109.47254 * 240.00641 * 20 18 16 24 24 H 1.08996 * 109.47654 * 60.00238 * 1 2 3 25 25 H 1.09005 * 109.47243 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47476 * 299.99962 * 1 2 3 27 27 H 1.09001 * 109.46652 * 65.00335 * 4 2 1 28 28 H 1.08992 * 109.47514 * 305.00424 * 4 2 1 29 29 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 30 30 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 31 31 H 1.07996 * 126.58016 * 0.03378 * 7 6 5 32 32 H 1.08006 * 126.57610 * 179.97438 * 8 7 6 33 33 H 1.08006 * 125.79583 * 179.97438 * 9 8 7 34 34 H 1.00904 * 110.99933 * 208.95423 * 11 2 1 35 35 H 1.08996 * 109.47033 * 300.00382 * 12 11 2 36 36 H 1.08998 * 109.46787 * 60.00044 * 12 11 2 37 37 H 1.09005 * 109.46398 * 184.99731 * 13 12 11 38 38 H 1.08994 * 109.47510 * 305.00112 * 13 12 11 39 39 H 1.09005 * 109.46878 * 299.99535 * 15 14 13 40 40 H 1.08997 * 109.47119 * 59.99734 * 15 14 13 41 41 H 0.97000 * 119.99740 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 6 4.0672 -1.3240 2.5438 7 6 4.4192 -2.6204 2.6147 8 6 4.8278 -2.8616 3.9465 9 6 4.7016 -1.6982 4.6097 10 8 4.2449 -0.7692 3.7540 11 7 2.0196 -0.6924 -1.1995 12 6 2.0823 0.2227 -2.3469 13 6 2.5961 -0.5328 -3.5742 14 8 1.6511 -1.5389 -3.9443 15 6 2.0367 -2.3064 -5.0863 16 6 0.9734 -3.3319 -5.3846 17 1 0.0916 -3.3917 -4.7639 18 6 1.1263 -4.1936 -6.4499 19 7 2.2003 -4.1211 -7.2055 20 14 -0.1914 -5.4652 -6.8193 21 1 -1.2903 -5.3414 -5.8281 22 1 -0.7291 -5.2384 -8.1847 23 1 0.3975 -6.8261 -6.7387 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7516 -1.7714 1.2056 28 1 1.6054 -0.2617 2.1370 29 1 3.9994 -1.0726 0.4259 30 1 3.8531 0.4371 1.3573 31 1 4.3952 -3.3388 1.8087 32 1 5.1747 -3.8001 4.3533 33 1 4.9314 -1.5375 5.6527 34 1 2.9173 -1.1204 -1.0288 35 1 1.0869 0.6164 -2.5525 36 1 2.7587 1.0463 -2.1182 37 1 2.7270 0.1647 -4.4016 38 1 3.5519 -1.0009 -3.3389 39 1 2.1557 -1.6455 -5.9449 40 1 2.9810 -2.8113 -4.8827 41 1 2.3080 -4.7276 -7.9548 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385274399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:27 Heat of formation + Delta-G solvation = -69.336991 kcal Electronic energy + Delta-G solvation = -19692.909309 eV Core-core repulsion = 16573.198952 eV Total energy + Delta-G solvation = -3119.710357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.46300 -39.20571 -38.07488 -35.09543 -34.49970 -33.71294 -32.14176 -29.68903 -28.90739 -28.05442 -24.88348 -24.44855 -22.82738 -22.65503 -21.41196 -21.15251 -18.62708 -18.26332 -17.53356 -17.13989 -17.00684 -16.62346 -16.16729 -15.92142 -15.44799 -15.15379 -14.69856 -14.37956 -14.01308 -13.74249 -13.73034 -13.69392 -13.37578 -13.09706 -13.00058 -12.81108 -12.77890 -12.52113 -12.24275 -12.21207 -12.01652 -11.60851 -11.55676 -11.22351 -10.85040 -10.84055 -10.16385 -9.35742 -9.19625 -8.30896 -6.42411 0.81550 1.40313 1.41819 1.56881 1.71039 2.11566 2.36316 3.02734 3.19380 3.30648 3.66445 3.96462 3.99144 4.13704 4.16997 4.28797 4.31939 4.37956 4.48779 4.56375 4.62514 4.66990 4.75893 4.83004 4.88625 4.96084 4.96831 5.04477 5.07182 5.12860 5.21293 5.23017 5.30973 5.46468 5.57502 5.61649 5.99473 6.20896 6.22985 6.53865 6.61392 6.89295 7.29988 8.81723 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020350 B = 0.003218 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.575614 B = 8698.255519 C = 9281.397622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 H 0.059 0.941 4 C -0.107 4.107 5 C -0.040 4.040 6 C -0.020 4.020 7 C -0.230 4.230 8 C -0.230 4.230 9 C -0.045 4.045 10 O -0.191 6.191 11 N -0.696 5.696 12 C 0.075 3.925 13 C 0.053 3.947 14 O -0.396 6.396 15 C 0.208 3.792 16 C -0.544 4.544 17 H 0.059 0.941 18 C 0.005 3.995 19 N -0.932 5.932 20 Si 0.983 3.017 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.271 1.271 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.238 0.762 34 H 0.341 0.659 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.039 0.961 39 H -0.017 1.017 40 H -0.017 1.017 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 8.862 22.446 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 H 0.076 0.924 4 C -0.145 4.145 5 C -0.077 4.077 6 C -0.070 4.070 7 C -0.249 4.249 8 C -0.249 4.249 9 C -0.112 4.112 10 O -0.088 6.088 11 N -0.331 5.331 12 C -0.054 4.054 13 C -0.024 4.024 14 O -0.315 6.315 15 C 0.133 3.867 16 C -0.581 4.581 17 H 0.077 0.923 18 C -0.193 4.193 19 N -0.571 5.571 20 Si 0.806 3.194 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.166 0.834 32 H 0.181 0.819 33 H 0.254 0.746 34 H 0.162 0.838 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.001 0.999 40 H 0.001 0.999 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.505 8.818 22.292 24.228 hybrid contribution 0.827 -0.490 -0.525 1.095 sum 4.332 8.327 21.767 23.705 Atomic orbital electron populations 1.21779 0.94786 1.01660 1.01480 1.21538 0.95906 0.96138 0.88424 0.92360 1.21690 0.93499 1.01667 0.97664 1.20217 0.95911 1.01060 0.90501 1.22638 1.04628 0.93400 0.86312 1.21918 1.07281 0.96527 0.99221 1.22176 1.07735 1.00803 0.94217 1.24750 1.02546 0.86851 0.97057 1.84006 1.65921 1.39779 1.19066 1.60359 1.34104 1.34084 1.04511 1.21922 1.01487 0.93161 0.88812 1.22622 0.92306 0.90667 0.96795 1.87916 1.45957 1.49066 1.48588 1.19792 0.94713 0.89376 0.82811 1.21411 1.06050 1.17085 1.13596 0.92298 1.25961 0.98689 0.99666 0.95017 1.70077 1.29003 1.39434 1.18610 0.85143 0.78225 0.77748 0.78329 1.18954 1.19580 1.19609 0.93566 0.93620 0.90794 0.91808 0.90042 0.88748 0.88973 0.83424 0.81894 0.74632 0.83798 0.91124 0.91251 0.93557 0.94240 0.99889 0.99904 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.41 71.98 0.68 -2.48 16 2 C 0.09 1.89 2.65 44.91 0.12 2.01 16 3 H 0.06 1.06 7.80 -2.38 -0.02 1.04 16 4 C -0.11 -2.04 4.79 30.59 0.15 -1.89 16 5 C -0.04 -0.70 5.58 29.85 0.17 -0.54 16 6 C -0.02 -0.42 6.57 24.83 0.16 -0.26 16 7 C -0.23 -4.99 10.81 22.19 0.24 -4.75 16 8 C -0.23 -4.21 10.91 22.19 0.24 -3.96 16 9 C -0.05 -0.72 12.09 66.97 0.81 0.09 16 10 O -0.19 -3.94 10.65 -2.58 -0.03 -3.97 16 11 N -0.70 -19.19 6.26 -491.59 -3.08 -22.27 16 12 C 0.08 2.12 5.87 86.30 0.51 2.63 16 13 C 0.05 1.97 6.22 71.98 0.45 2.42 16 14 O -0.40 -19.88 10.27 -148.98 -1.53 -21.41 16 15 C 0.21 12.03 5.69 71.24 0.41 12.44 16 16 C -0.54 -33.35 9.43 25.60 0.24 -33.11 16 17 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 18 C 0.00 0.28 5.46 84.65 0.46 0.74 16 19 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 20 Si 0.98 45.39 29.54 68.60 2.03 47.42 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H 0.05 1.13 7.45 -2.39 -0.02 1.11 16 25 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.67 6.43 -2.39 -0.02 1.65 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.24 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.34 8.77 6.47 -89.69 -0.58 8.19 16 35 H 0.07 2.11 7.44 -2.39 -0.02 2.10 16 36 H 0.07 1.48 8.05 -2.39 -0.02 1.46 16 37 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H -0.02 -1.00 8.14 -2.38 -0.02 -1.01 16 40 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 41 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -71.87 344.02 2.72 -69.15 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.41 Total: 14.41 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 4.63 Total: -26.67 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -2.79 Total: -78.94 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -1.56 Total: -25.38 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -71.87 2.72 -69.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385274399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.185 kcal (2) G-P(sol) polarization free energy of solvation -71.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds