Wall clock time and date at job start Mon Mar 30 2020 06:38:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52993 * 109.47110 * 2 1
4 4 C 1.52998 * 109.47110 * 179.97438 * 3 2 1
5 5 H 1.08993 * 109.47513 * 305.00394 * 4 3 2
6 6 O 1.42907 * 109.47029 * 65.00343 * 4 3 2
7 7 C 1.50700 * 109.47136 * 185.00195 * 4 3 2
8 8 C 1.40890 * 126.29136 * 279.97615 * 7 4 3
9 9 C 1.34856 * 107.41842 * 180.02562 * 8 7 4
10 10 N 1.36343 * 108.21378 * 0.02562 * 9 8 7
11 11 C 1.46500 * 125.63153 * 180.02562 * 10 9 8
12 12 C 1.52997 * 109.47473 * 90.02303 * 11 10 9
13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10
14 14 C 1.42902 * 114.00186 * 180.02562 * 13 12 11
15 15 C 1.50697 * 109.47205 * 179.97438 * 14 13 12
16 16 H 1.08008 * 120.00105 * 359.97438 * 15 14 13
17 17 C 1.37873 * 120.00129 * 180.02562 * 15 14 13
18 18 N 1.31518 * 120.00249 * 180.02562 * 17 15 14
19 19 Si 1.86803 * 119.99832 * 359.97438 * 17 15 14
20 20 H 1.48496 * 109.46987 * 90.00549 * 19 17 15
21 21 H 1.48500 * 109.47073 * 210.00312 * 19 17 15
22 22 H 1.48500 * 109.47242 * 330.00296 * 19 17 15
23 23 C 1.34850 * 126.29166 * 100.29140 * 7 4 3
24 24 H 1.08996 * 109.47727 * 59.99553 * 1 2 3
25 25 H 1.08998 * 109.47572 * 179.97438 * 1 2 3
26 26 H 1.09004 * 109.47030 * 299.99783 * 1 2 3
27 27 H 1.09005 * 109.46586 * 240.00510 * 2 1 3
28 28 H 1.09001 * 109.47300 * 120.00616 * 2 1 3
29 29 H 1.09004 * 109.46997 * 60.00197 * 3 2 1
30 30 H 1.09001 * 109.47542 * 300.00468 * 3 2 1
31 31 H 0.96702 * 113.99917 * 60.00056 * 6 4 3
32 32 H 1.08004 * 126.29267 * 359.97438 * 8 7 4
33 33 H 1.07993 * 125.88867 * 180.02562 * 9 8 7
34 34 H 1.09002 * 109.47129 * 330.02045 * 11 10 9
35 35 H 1.08998 * 109.46845 * 210.02852 * 11 10 9
36 36 H 1.09002 * 109.47153 * 59.99757 * 12 11 10
37 37 H 1.09001 * 109.46832 * 299.99948 * 12 11 10
38 38 H 1.09001 * 109.46918 * 299.99649 * 14 13 12
39 39 H 1.08999 * 109.46857 * 59.99535 * 14 13 12
40 40 H 0.97001 * 119.99927 * 179.97438 * 18 17 15
41 41 H 1.08000 * 125.89321 * 359.97438 * 23 7 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 3.5699 1.4424 0.0006
5 1 3.9330 0.8531 0.8426
6 8 4.0468 0.8729 -1.2202
7 6 4.0722 2.8579 0.1245
8 6 4.1652 3.8038 -0.9155
9 6 4.6621 4.9396 -0.3849
10 7 4.8798 4.7293 0.9445
11 6 5.4150 5.7140 1.8880
12 6 4.2618 6.5061 2.5074
13 8 4.7838 7.4670 3.4272
14 6 3.7839 8.2639 4.0653
15 6 4.4432 9.2367 5.0087
16 1 5.5184 9.2452 5.1112
17 6 3.6739 10.1150 5.7419
18 7 4.2493 10.9643 6.5648
19 14 1.8143 10.0997 5.5653
20 1 1.2312 9.1547 6.5512
21 1 1.2823 11.4639 5.8127
22 1 1.4510 9.6685 4.1915
23 6 4.5209 3.4500 1.2499
24 1 -0.3634 0.5139 -0.8899
25 1 -0.3634 -1.0276 -0.0005
26 1 -0.3633 0.5138 0.8900
27 1 1.8932 -0.5138 -0.8901
28 1 1.8933 -0.5139 0.8899
29 1 1.6766 1.9563 0.8900
30 1 1.6766 1.9564 -0.8899
31 1 3.7618 1.3473 -2.0132
32 1 3.8899 3.6477 -1.9481
33 1 4.8543 5.8574 -0.9206
34 1 6.0827 6.3961 1.3616
35 1 5.9671 5.2004 2.6750
36 1 3.5941 5.8240 3.0339
37 1 3.7097 7.0197 1.7203
38 1 3.2213 8.8136 3.3107
39 1 3.1069 7.6181 4.6245
40 1 3.7080 11.5826 7.0804
41 1 4.5832 2.9907 2.2254
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385789192.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:38:57
Heat of formation + Delta-G solvation = -66.142980 kcal
Electronic energy + Delta-G solvation = -19575.909300 eV
Core-core repulsion = 16456.337446 eV
Total energy + Delta-G solvation = -3119.571855 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.32412 -37.90170 -37.14374 -34.29246 -33.47740 -32.58856 -30.22117 -28.95131
-28.02593 -27.04432 -23.91122 -22.65673 -21.99100 -21.41982 -20.13151 -19.73859
-17.57471 -17.03632 -16.17696 -15.85812 -15.53750 -15.41921 -14.97737 -14.44296
-14.21511 -14.10394 -13.78521 -13.54932 -12.97732 -12.95567 -12.70154 -12.48008
-12.30420 -11.99347 -11.94058 -11.60985 -11.41298 -11.18950 -10.99708 -10.87587
-10.83986 -10.79216 -10.12590 -9.97961 -9.33537 -9.05551 -8.63249 -8.54768
-8.13467 -6.21664 -4.22207 2.22290 2.84590 2.87328 3.17434 3.25082
3.25473 4.26205 4.39905 4.50398 4.57961 4.77728 4.80397 4.88732
5.04844 5.06060 5.09330 5.20102 5.27957 5.34648 5.39038 5.42052
5.49825 5.62258 5.64854 5.72509 5.77788 5.85417 5.87909 6.01585
6.11839 6.14575 6.39642 6.43530 6.83786 6.91517 7.19173 7.34381
7.45267 7.54959 7.79834 8.50094 8.87836 9.36319 10.91052
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.023564 B = 0.003168 C = 0.002890
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1187.980355 B = 8837.304686 C = 9687.879819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.122 4.122
3 C -0.144 4.144
4 C 0.183 3.817
5 H 0.097 0.903
6 O -0.559 6.559
7 C -0.206 4.206
8 C -0.195 4.195
9 C -0.009 4.009
10 N -0.438 5.438
11 C 0.106 3.894
12 C 0.047 3.953
13 O -0.379 6.379
14 C 0.172 3.828
15 C -0.524 4.524
16 H 0.083 0.917
17 C 0.074 3.926
18 N -0.892 5.892
19 Si 0.876 3.124
20 H -0.273 1.273
21 H -0.280 1.280
22 H -0.267 1.267
23 C 0.001 3.999
24 H 0.052 0.948
25 H 0.052 0.948
26 H 0.053 0.947
27 H 0.066 0.934
28 H 0.060 0.940
29 H 0.070 0.930
30 H 0.064 0.936
31 H 0.372 0.628
32 H 0.131 0.869
33 H 0.161 0.839
34 H 0.098 0.902
35 H 0.098 0.902
36 H 0.045 0.955
37 H 0.045 0.955
38 H 0.005 0.995
39 H 0.001 0.999
40 H 0.268 0.732
41 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.443 -19.062 -15.324 24.858
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.160 4.160
3 C -0.181 4.181
4 C 0.123 3.877
5 H 0.115 0.885
6 O -0.364 6.364
7 C -0.213 4.213
8 C -0.220 4.220
9 C -0.139 4.139
10 N -0.113 5.113
11 C -0.016 4.016
12 C -0.031 4.031
13 O -0.298 6.298
14 C 0.097 3.903
15 C -0.562 4.562
16 H 0.101 0.899
17 C -0.128 4.128
18 N -0.530 5.530
19 Si 0.702 3.298
20 H -0.198 1.198
21 H -0.206 1.206
22 H -0.191 1.191
23 C -0.130 4.130
24 H 0.071 0.929
25 H 0.071 0.929
26 H 0.072 0.928
27 H 0.085 0.915
28 H 0.078 0.922
29 H 0.089 0.911
30 H 0.083 0.917
31 H 0.219 0.781
32 H 0.149 0.851
33 H 0.178 0.822
34 H 0.117 0.883
35 H 0.116 0.884
36 H 0.063 0.937
37 H 0.063 0.937
38 H 0.023 0.977
39 H 0.018 0.982
40 H 0.078 0.922
41 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -3.863 -19.021 -14.468 24.208
hybrid contribution -1.606 0.691 -0.307 1.775
sum -5.469 -18.330 -14.775 24.170
Atomic orbital electron populations
1.21787 0.96129 1.01400 1.01752 1.21492 0.95419 0.96694 1.02360
1.22290 0.95841 0.97007 1.03005 1.20092 0.91579 0.88713 0.87283
0.88547 1.86545 1.77433 1.56630 1.15744 1.20071 1.09773 0.97352
0.94084 1.20555 1.09185 0.93453 0.98780 1.21848 1.07690 1.00682
0.83631 1.44064 1.48846 1.10443 1.07992 1.21701 0.96361 0.90846
0.92643 1.22546 0.94899 0.92263 0.93435 1.87853 1.34970 1.49590
1.57361 1.20650 0.88004 0.89642 0.92005 1.20847 0.96600 1.16480
1.22258 0.89853 1.24757 0.98673 0.94807 0.94597 1.69867 1.35923
1.21090 1.26121 0.86852 0.85761 0.78017 0.79138 1.19807 1.20585
1.19144 1.21611 1.06513 0.85115 0.99727 0.92895 0.92921 0.92822
0.91505 0.92166 0.91085 0.91691 0.78138 0.85079 0.82190 0.88328
0.88358 0.93695 0.93687 0.97711 0.98169 0.92196 0.82262
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16
2 C -0.12 -0.97 5.83 -26.74 -0.16 -1.12 16
3 C -0.14 -1.24 4.87 -26.74 -0.13 -1.37 16
4 C 0.18 1.79 3.42 -27.88 -0.10 1.70 16
5 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16
6 O -0.56 -5.66 12.80 -35.23 -0.45 -6.11 16
7 C -0.21 -2.35 5.14 -104.82 -0.54 -2.89 16
8 C -0.20 -2.19 10.29 -39.78 -0.41 -2.60 16
9 C -0.01 -0.10 11.43 -16.75 -0.19 -0.29 16
10 N -0.44 -5.53 2.75 -117.13 -0.32 -5.85 16
11 C 0.11 1.41 6.46 -4.04 -0.03 1.38 16
12 C 0.05 0.78 6.26 37.16 0.23 1.02 16
13 O -0.38 -8.39 10.33 -35.23 -0.36 -8.76 16
14 C 0.17 4.26 4.76 36.00 0.17 4.43 16
15 C -0.52 -15.27 9.99 -34.44 -0.34 -15.61 16
16 H 0.08 2.65 8.06 -52.48 -0.42 2.22 16
17 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16
18 N -0.89 -27.07 13.96 55.43 0.77 -26.29 16
19 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16
20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16
22 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16
23 C 0.00 0.01 11.35 -16.75 -0.19 -0.18 16
24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16
26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16
27 H 0.07 0.55 7.82 -51.93 -0.41 0.14 16
28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
31 H 0.37 2.69 8.41 45.56 0.38 3.08 16
32 H 0.13 1.18 7.82 -52.48 -0.41 0.77 16
33 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16
34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16
35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16
36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16
38 H 0.01 0.13 7.20 -51.93 -0.37 -0.25 16
39 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16
40 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16
41 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16
LS Contribution 344.11 15.07 5.19 5.19
Total: -1.00 -31.97 344.11 -7.54 -39.51
By element:
Atomic # 1 Polarization: 6.51 SS G_CDS: -6.29 Total: 0.23 kcal
Atomic # 6 Polarization: -12.83 SS G_CDS: -1.41 Total: -14.24 kcal
Atomic # 7 Polarization: -32.59 SS G_CDS: 0.45 Total: -32.14 kcal
Atomic # 8 Polarization: -14.05 SS G_CDS: -0.81 Total: -14.87 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -31.97 -7.54 -39.51 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385789192.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.631 kcal
(2) G-P(sol) polarization free energy of solvation -31.973 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.604 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.143 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds