Wall clock time and date at job start Mon Mar 30 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47110 * 2 1 4 4 C 1.52998 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47513 * 305.00394 * 4 3 2 6 6 O 1.42907 * 109.47029 * 65.00343 * 4 3 2 7 7 C 1.50700 * 109.47136 * 185.00195 * 4 3 2 8 8 C 1.40890 * 126.29136 * 279.97615 * 7 4 3 9 9 C 1.34856 * 107.41842 * 180.02562 * 8 7 4 10 10 N 1.36343 * 108.21378 * 0.02562 * 9 8 7 11 11 C 1.46500 * 125.63153 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47473 * 90.02303 * 11 10 9 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00186 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47205 * 179.97438 * 14 13 12 16 16 H 1.08008 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00129 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00249 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99832 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46987 * 90.00549 * 19 17 15 21 21 H 1.48500 * 109.47073 * 210.00312 * 19 17 15 22 22 H 1.48500 * 109.47242 * 330.00296 * 19 17 15 23 23 C 1.34850 * 126.29166 * 100.29140 * 7 4 3 24 24 H 1.08996 * 109.47727 * 59.99553 * 1 2 3 25 25 H 1.08998 * 109.47572 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47030 * 299.99783 * 1 2 3 27 27 H 1.09005 * 109.46586 * 240.00510 * 2 1 3 28 28 H 1.09001 * 109.47300 * 120.00616 * 2 1 3 29 29 H 1.09004 * 109.46997 * 60.00197 * 3 2 1 30 30 H 1.09001 * 109.47542 * 300.00468 * 3 2 1 31 31 H 0.96702 * 113.99917 * 60.00056 * 6 4 3 32 32 H 1.08004 * 126.29267 * 359.97438 * 8 7 4 33 33 H 1.07993 * 125.88867 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47129 * 330.02045 * 11 10 9 35 35 H 1.08998 * 109.46845 * 210.02852 * 11 10 9 36 36 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 38 38 H 1.09001 * 109.46918 * 299.99649 * 14 13 12 39 39 H 1.08999 * 109.46857 * 59.99535 * 14 13 12 40 40 H 0.97001 * 119.99927 * 179.97438 * 18 17 15 41 41 H 1.08000 * 125.89321 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 1 3.9330 0.8531 0.8426 6 8 4.0468 0.8729 -1.2202 7 6 4.0722 2.8579 0.1245 8 6 4.1652 3.8038 -0.9155 9 6 4.6621 4.9396 -0.3849 10 7 4.8798 4.7293 0.9445 11 6 5.4150 5.7140 1.8880 12 6 4.2618 6.5061 2.5074 13 8 4.7838 7.4670 3.4272 14 6 3.7839 8.2639 4.0653 15 6 4.4432 9.2367 5.0087 16 1 5.5184 9.2452 5.1112 17 6 3.6739 10.1150 5.7419 18 7 4.2493 10.9643 6.5648 19 14 1.8143 10.0997 5.5653 20 1 1.2312 9.1547 6.5512 21 1 1.2823 11.4639 5.8127 22 1 1.4510 9.6685 4.1915 23 6 4.5209 3.4500 1.2499 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.7618 1.3473 -2.0132 32 1 3.8899 3.6477 -1.9481 33 1 4.8543 5.8574 -0.9206 34 1 6.0827 6.3961 1.3616 35 1 5.9671 5.2004 2.6750 36 1 3.5941 5.8240 3.0339 37 1 3.7097 7.0197 1.7203 38 1 3.2213 8.8136 3.3107 39 1 3.1069 7.6181 4.6245 40 1 3.7080 11.5826 7.0804 41 1 4.5832 2.9907 2.2254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385789192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:57 Heat of formation + Delta-G solvation = -66.142980 kcal Electronic energy + Delta-G solvation = -19575.909300 eV Core-core repulsion = 16456.337446 eV Total energy + Delta-G solvation = -3119.571855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.32412 -37.90170 -37.14374 -34.29246 -33.47740 -32.58856 -30.22117 -28.95131 -28.02593 -27.04432 -23.91122 -22.65673 -21.99100 -21.41982 -20.13151 -19.73859 -17.57471 -17.03632 -16.17696 -15.85812 -15.53750 -15.41921 -14.97737 -14.44296 -14.21511 -14.10394 -13.78521 -13.54932 -12.97732 -12.95567 -12.70154 -12.48008 -12.30420 -11.99347 -11.94058 -11.60985 -11.41298 -11.18950 -10.99708 -10.87587 -10.83986 -10.79216 -10.12590 -9.97961 -9.33537 -9.05551 -8.63249 -8.54768 -8.13467 -6.21664 -4.22207 2.22290 2.84590 2.87328 3.17434 3.25082 3.25473 4.26205 4.39905 4.50398 4.57961 4.77728 4.80397 4.88732 5.04844 5.06060 5.09330 5.20102 5.27957 5.34648 5.39038 5.42052 5.49825 5.62258 5.64854 5.72509 5.77788 5.85417 5.87909 6.01585 6.11839 6.14575 6.39642 6.43530 6.83786 6.91517 7.19173 7.34381 7.45267 7.54959 7.79834 8.50094 8.87836 9.36319 10.91052 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.003168 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.980355 B = 8837.304686 C = 9687.879819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.144 4.144 4 C 0.183 3.817 5 H 0.097 0.903 6 O -0.559 6.559 7 C -0.206 4.206 8 C -0.195 4.195 9 C -0.009 4.009 10 N -0.438 5.438 11 C 0.106 3.894 12 C 0.047 3.953 13 O -0.379 6.379 14 C 0.172 3.828 15 C -0.524 4.524 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.892 5.892 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.267 1.267 23 C 0.001 3.999 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.372 0.628 32 H 0.131 0.869 33 H 0.161 0.839 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.005 0.995 39 H 0.001 0.999 40 H 0.268 0.732 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.443 -19.062 -15.324 24.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.123 3.877 5 H 0.115 0.885 6 O -0.364 6.364 7 C -0.213 4.213 8 C -0.220 4.220 9 C -0.139 4.139 10 N -0.113 5.113 11 C -0.016 4.016 12 C -0.031 4.031 13 O -0.298 6.298 14 C 0.097 3.903 15 C -0.562 4.562 16 H 0.101 0.899 17 C -0.128 4.128 18 N -0.530 5.530 19 Si 0.702 3.298 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.130 4.130 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.219 0.781 32 H 0.149 0.851 33 H 0.178 0.822 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.018 0.982 40 H 0.078 0.922 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.863 -19.021 -14.468 24.208 hybrid contribution -1.606 0.691 -0.307 1.775 sum -5.469 -18.330 -14.775 24.170 Atomic orbital electron populations 1.21787 0.96129 1.01400 1.01752 1.21492 0.95419 0.96694 1.02360 1.22290 0.95841 0.97007 1.03005 1.20092 0.91579 0.88713 0.87283 0.88547 1.86545 1.77433 1.56630 1.15744 1.20071 1.09773 0.97352 0.94084 1.20555 1.09185 0.93453 0.98780 1.21848 1.07690 1.00682 0.83631 1.44064 1.48846 1.10443 1.07992 1.21701 0.96361 0.90846 0.92643 1.22546 0.94899 0.92263 0.93435 1.87853 1.34970 1.49590 1.57361 1.20650 0.88004 0.89642 0.92005 1.20847 0.96600 1.16480 1.22258 0.89853 1.24757 0.98673 0.94807 0.94597 1.69867 1.35923 1.21090 1.26121 0.86852 0.85761 0.78017 0.79138 1.19807 1.20585 1.19144 1.21611 1.06513 0.85115 0.99727 0.92895 0.92921 0.92822 0.91505 0.92166 0.91085 0.91691 0.78138 0.85079 0.82190 0.88328 0.88358 0.93695 0.93687 0.97711 0.98169 0.92196 0.82262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.97 5.83 -26.74 -0.16 -1.12 16 3 C -0.14 -1.24 4.87 -26.74 -0.13 -1.37 16 4 C 0.18 1.79 3.42 -27.88 -0.10 1.70 16 5 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 6 O -0.56 -5.66 12.80 -35.23 -0.45 -6.11 16 7 C -0.21 -2.35 5.14 -104.82 -0.54 -2.89 16 8 C -0.20 -2.19 10.29 -39.78 -0.41 -2.60 16 9 C -0.01 -0.10 11.43 -16.75 -0.19 -0.29 16 10 N -0.44 -5.53 2.75 -117.13 -0.32 -5.85 16 11 C 0.11 1.41 6.46 -4.04 -0.03 1.38 16 12 C 0.05 0.78 6.26 37.16 0.23 1.02 16 13 O -0.38 -8.39 10.33 -35.23 -0.36 -8.76 16 14 C 0.17 4.26 4.76 36.00 0.17 4.43 16 15 C -0.52 -15.27 9.99 -34.44 -0.34 -15.61 16 16 H 0.08 2.65 8.06 -52.48 -0.42 2.22 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.89 -27.07 13.96 55.43 0.77 -26.29 16 19 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 23 C 0.00 0.01 11.35 -16.75 -0.19 -0.18 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.55 7.82 -51.93 -0.41 0.14 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.37 2.69 8.41 45.56 0.38 3.08 16 32 H 0.13 1.18 7.82 -52.48 -0.41 0.77 16 33 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.01 0.13 7.20 -51.93 -0.37 -0.25 16 39 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 41 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -31.97 344.11 -7.54 -39.51 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.29 Total: 0.23 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -1.41 Total: -14.24 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.45 Total: -32.14 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.81 Total: -14.87 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.97 -7.54 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385789192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.631 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds