Wall clock time and date at job start Mon Mar 30 2020 06:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47110 * 2 1 4 4 C 1.52998 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47513 * 305.00394 * 4 3 2 6 6 O 1.42907 * 109.47029 * 65.00343 * 4 3 2 7 7 C 1.50700 * 109.47136 * 185.00195 * 4 3 2 8 8 C 1.40890 * 126.29136 * 279.97615 * 7 4 3 9 9 C 1.34856 * 107.41842 * 180.02562 * 8 7 4 10 10 N 1.36343 * 108.21378 * 0.02562 * 9 8 7 11 11 C 1.46500 * 125.63153 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47473 * 90.02303 * 11 10 9 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00186 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47205 * 179.97438 * 14 13 12 16 16 H 1.08008 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00129 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00249 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99832 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46987 * 90.00549 * 19 17 15 21 21 H 1.48500 * 109.47073 * 210.00312 * 19 17 15 22 22 H 1.48500 * 109.47242 * 330.00296 * 19 17 15 23 23 C 1.34850 * 126.29166 * 100.29140 * 7 4 3 24 24 H 1.08996 * 109.47727 * 59.99553 * 1 2 3 25 25 H 1.08998 * 109.47572 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47030 * 299.99783 * 1 2 3 27 27 H 1.09005 * 109.46586 * 240.00510 * 2 1 3 28 28 H 1.09001 * 109.47300 * 120.00616 * 2 1 3 29 29 H 1.09004 * 109.46997 * 60.00197 * 3 2 1 30 30 H 1.09001 * 109.47542 * 300.00468 * 3 2 1 31 31 H 0.96702 * 113.99917 * 60.00056 * 6 4 3 32 32 H 1.08004 * 126.29267 * 359.97438 * 8 7 4 33 33 H 1.07993 * 125.88867 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47129 * 330.02045 * 11 10 9 35 35 H 1.08998 * 109.46845 * 210.02852 * 11 10 9 36 36 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 38 38 H 1.09001 * 109.46918 * 299.99649 * 14 13 12 39 39 H 1.08999 * 109.46857 * 59.99535 * 14 13 12 40 40 H 0.97001 * 119.99927 * 179.97438 * 18 17 15 41 41 H 1.08000 * 125.89321 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4424 0.0006 5 1 3.9330 0.8531 0.8426 6 8 4.0468 0.8729 -1.2202 7 6 4.0722 2.8579 0.1245 8 6 4.1652 3.8038 -0.9155 9 6 4.6621 4.9396 -0.3849 10 7 4.8798 4.7293 0.9445 11 6 5.4150 5.7140 1.8880 12 6 4.2618 6.5061 2.5074 13 8 4.7838 7.4670 3.4272 14 6 3.7839 8.2639 4.0653 15 6 4.4432 9.2367 5.0087 16 1 5.5184 9.2452 5.1112 17 6 3.6739 10.1150 5.7419 18 7 4.2493 10.9643 6.5648 19 14 1.8143 10.0997 5.5653 20 1 1.2312 9.1547 6.5512 21 1 1.2823 11.4639 5.8127 22 1 1.4510 9.6685 4.1915 23 6 4.5209 3.4500 1.2499 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.7618 1.3473 -2.0132 32 1 3.8899 3.6477 -1.9481 33 1 4.8543 5.8574 -0.9206 34 1 6.0827 6.3961 1.3616 35 1 5.9671 5.2004 2.6750 36 1 3.5941 5.8240 3.0339 37 1 3.7097 7.0197 1.7203 38 1 3.2213 8.8136 3.3107 39 1 3.1069 7.6181 4.6245 40 1 3.7080 11.5826 7.0804 41 1 4.5832 2.9907 2.2254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385789192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:57 Heat of formation + Delta-G solvation = -86.761040 kcal Electronic energy + Delta-G solvation = -19576.803367 eV Core-core repulsion = 16456.337446 eV Total energy + Delta-G solvation = -3120.465921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21514 -38.99014 -38.46325 -35.09631 -34.95145 -34.21715 -31.18450 -30.41598 -29.17334 -28.19814 -24.81101 -24.04112 -23.69064 -22.08510 -21.03240 -20.59151 -19.15256 -18.53076 -17.38654 -17.02787 -16.64798 -16.61968 -16.49109 -15.66751 -15.32575 -14.94595 -14.75737 -14.69158 -14.28576 -14.20423 -14.04207 -13.63217 -13.12633 -13.05163 -12.93403 -12.71473 -12.65398 -12.45705 -12.36215 -12.21374 -11.87987 -11.65644 -11.48058 -11.47438 -10.98988 -10.87760 -10.54076 -9.45525 -9.01962 -8.42020 -6.51116 1.29463 1.31173 1.33460 1.43992 1.84451 2.01836 2.25063 2.90440 3.10573 3.67227 3.70619 3.91156 3.99105 4.13135 4.19641 4.22462 4.23920 4.29012 4.40260 4.45687 4.53644 4.57306 4.69466 4.72731 4.80495 4.89796 4.94674 5.00835 5.07666 5.27105 5.28361 5.35319 5.35446 5.51508 5.58387 5.82642 6.05669 6.30647 6.42919 6.51638 6.59746 6.91969 7.13086 8.74770 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.003168 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.980355 B = 8837.304686 C = 9687.879819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.135 4.135 4 C 0.186 3.814 5 H 0.095 0.905 6 O -0.570 6.570 7 C -0.208 4.208 8 C -0.199 4.199 9 C -0.023 4.023 10 N -0.444 5.444 11 C 0.117 3.883 12 C 0.045 3.955 13 O -0.401 6.401 14 C 0.182 3.818 15 C -0.550 4.550 16 H 0.034 0.966 17 C 0.015 3.985 18 N -0.939 5.939 19 Si 0.954 3.046 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.247 1.247 23 C -0.018 4.018 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.384 0.616 32 H 0.152 0.848 33 H 0.176 0.824 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.014 0.986 39 H 0.013 0.987 40 H 0.274 0.726 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.463 -20.215 -16.700 27.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.173 4.173 4 C 0.127 3.873 5 H 0.113 0.887 6 O -0.377 6.377 7 C -0.215 4.215 8 C -0.224 4.224 9 C -0.152 4.152 10 N -0.121 5.121 11 C -0.005 4.005 12 C -0.032 4.032 13 O -0.320 6.320 14 C 0.106 3.894 15 C -0.587 4.587 16 H 0.052 0.948 17 C -0.183 4.183 18 N -0.578 5.578 19 Si 0.775 3.225 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.170 1.170 23 C -0.148 4.148 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.233 0.767 32 H 0.169 0.831 33 H 0.193 0.807 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.084 0.916 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.872 -20.199 -15.874 26.353 hybrid contribution -0.868 1.001 0.073 1.327 sum -6.740 -19.199 -15.801 25.762 Atomic orbital electron populations 1.21782 0.95583 1.01885 1.01756 1.21463 0.95866 0.96113 1.02259 1.22198 0.94934 0.97442 1.02768 1.20074 0.92182 0.87795 0.87278 0.88736 1.86521 1.77718 1.57060 1.16360 1.20342 1.09157 0.98041 0.94002 1.20890 1.08587 0.93119 0.99770 1.22265 1.07803 1.01691 0.83478 1.44052 1.49511 1.10399 1.08126 1.21524 0.95084 0.90915 0.93016 1.22768 0.96453 0.91438 0.92581 1.87796 1.35096 1.50581 1.58508 1.20358 0.88024 0.89411 0.91602 1.21128 0.94764 1.18593 1.24240 0.94780 1.25816 1.05035 0.93818 0.93661 1.70019 1.38580 1.22034 1.27159 0.85632 0.77763 0.78738 0.80373 1.18327 1.19690 1.17044 1.21964 1.06995 0.85183 1.00692 0.92647 0.92243 0.93050 0.91641 0.92232 0.91758 0.91407 0.76746 0.83051 0.80680 0.87652 0.87839 0.93153 0.93122 0.96820 0.96941 0.91649 0.81180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.12 -1.70 5.83 30.59 0.18 -1.53 16 3 C -0.14 -2.13 4.87 30.59 0.15 -1.98 16 4 C 0.19 3.37 3.42 29.85 0.10 3.47 16 5 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 6 O -0.57 -10.53 12.80 -148.98 -1.91 -12.44 16 7 C -0.21 -4.41 5.14 -19.99 -0.10 -4.51 16 8 C -0.20 -4.05 10.29 22.14 0.23 -3.82 16 9 C -0.02 -0.51 11.43 83.21 0.95 0.45 16 10 N -0.44 -10.53 2.75 -524.49 -1.44 -11.97 16 11 C 0.12 2.95 6.46 86.38 0.56 3.51 16 12 C 0.05 1.45 6.26 71.98 0.45 1.90 16 13 O -0.40 -17.63 10.33 -148.98 -1.54 -19.17 16 14 C 0.18 8.85 4.76 71.24 0.34 9.19 16 15 C -0.55 -32.77 9.99 25.60 0.26 -32.51 16 16 H 0.03 2.28 8.06 -2.91 -0.02 2.26 16 17 C 0.02 0.89 5.47 84.65 0.46 1.35 16 18 N -0.94 -58.13 13.96 21.45 0.30 -57.83 16 19 Si 0.95 42.42 27.47 68.60 1.88 44.30 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.25 -10.13 6.54 99.48 0.65 -9.48 16 23 C -0.02 -0.42 11.35 83.21 0.94 0.52 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.06 0.96 7.82 -2.38 -0.02 0.94 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.38 4.77 8.41 -74.06 -0.62 4.15 16 32 H 0.15 2.33 7.82 -2.91 -0.02 2.31 16 33 H 0.18 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 39 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 40 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -69.15 344.11 2.84 -66.31 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.31 Total: 16.03 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 5.23 Total: -25.22 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -1.14 Total: -69.80 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -3.45 Total: -31.61 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.88 Total: 44.30 kcal Total: -69.15 2.84 -66.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385789192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.450 kcal (2) G-P(sol) polarization free energy of solvation -69.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds