Wall clock time and date at job start Mon Mar 30 2020 06:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.46635 * 2 1 4 4 C 1.52997 * 109.46787 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47261 * 54.99964 * 4 3 2 6 6 O 1.42905 * 109.47264 * 294.99875 * 4 3 2 7 7 C 1.50699 * 109.47078 * 174.99999 * 4 3 2 8 8 C 1.40891 * 126.29049 * 84.68844 * 7 4 3 9 9 C 1.34854 * 107.41228 * 179.83042 * 8 7 4 10 10 N 1.36340 * 108.21988 * 0.43022 * 9 8 7 11 11 C 1.46500 * 125.63357 * 179.68400 * 10 9 8 12 12 C 1.52991 * 109.47674 * 270.04662 * 11 10 9 13 13 O 1.42900 * 109.47479 * 180.02562 * 12 11 10 14 14 C 1.42902 * 113.99923 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.46884 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99698 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00012 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00119 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99868 * 0.02562 * 17 15 14 20 20 H 1.48488 * 109.47482 * 89.99692 * 19 17 15 21 21 H 1.48507 * 109.46619 * 209.99846 * 19 17 15 22 22 H 1.48501 * 109.46881 * 329.99180 * 19 17 15 23 23 C 1.34851 * 126.28886 * 264.99585 * 7 4 3 24 24 H 1.09006 * 109.47300 * 299.99757 * 1 2 3 25 25 H 1.09000 * 109.47679 * 59.99939 * 1 2 3 26 26 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46991 * 240.00270 * 2 1 3 28 28 H 1.09000 * 109.47229 * 119.99774 * 2 1 3 29 29 H 1.08998 * 109.47211 * 60.00404 * 3 2 1 30 30 H 1.09000 * 109.47128 * 299.99836 * 3 2 1 31 31 H 0.96702 * 113.99404 * 300.00214 * 6 4 3 32 32 H 1.07998 * 126.29194 * 359.96434 * 8 7 4 33 33 H 1.08009 * 125.88460 * 180.15467 * 9 8 7 34 34 H 1.09002 * 109.47284 * 30.05073 * 11 10 9 35 35 H 1.09004 * 109.46673 * 150.03975 * 11 10 9 36 36 H 1.09001 * 109.46755 * 300.00109 * 12 11 10 37 37 H 1.08996 * 109.47424 * 60.00061 * 12 11 10 38 38 H 1.09007 * 109.47238 * 299.99562 * 14 13 12 39 39 H 1.08994 * 109.47329 * 59.99824 * 14 13 12 40 40 H 0.96997 * 120.00152 * 180.02562 * 18 17 15 41 41 H 1.08002 * 125.89256 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9329 0.8533 -0.8427 6 8 4.0468 0.8731 1.2202 7 6 4.0721 2.8581 -0.1245 8 6 4.2514 3.7746 0.9304 9 6 4.7181 4.9207 0.3944 10 7 4.8244 4.7484 -0.9539 11 6 5.2881 5.7575 -1.9094 12 6 4.0945 6.5748 -2.4075 13 8 4.5468 7.5587 -3.3399 14 6 3.5043 8.3804 -3.8692 15 6 4.0917 9.3767 -4.8354 16 1 5.1547 9.3822 -5.0258 17 6 3.2719 10.2813 -5.4762 18 7 3.7845 11.1512 -6.3189 19 14 1.4332 10.2723 -5.1463 20 1 1.1297 11.1791 -4.0103 21 1 0.7108 10.7373 -6.3576 22 1 0.9977 8.8933 -4.8090 23 6 4.4270 3.4820 -1.2661 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.7617 1.3475 2.0131 32 1 4.0536 3.5921 1.9764 33 1 4.9611 5.8213 0.9388 34 1 6.0030 6.4193 -1.4206 35 1 5.7686 5.2640 -2.7542 36 1 3.3796 5.9129 -2.8963 37 1 3.6141 7.0682 -1.5627 38 1 2.7773 7.7556 -4.3882 39 1 3.0114 8.9115 -3.0550 40 1 3.2078 11.7878 -6.7695 41 1 4.4014 3.0526 -2.2567 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385789195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:00 Heat of formation + Delta-G solvation = -66.098703 kcal Electronic energy + Delta-G solvation = -19585.116243 eV Core-core repulsion = 16465.546309 eV Total energy + Delta-G solvation = -3119.569935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.32391 -37.90445 -37.14395 -34.29544 -33.47515 -32.58855 -30.23295 -28.94937 -28.00532 -27.04842 -23.91731 -22.65402 -21.99150 -21.40823 -20.14510 -19.73278 -17.58500 -17.03702 -16.17189 -15.85583 -15.53356 -15.42428 -14.98178 -14.43981 -14.22084 -14.10845 -13.78316 -13.54682 -12.98281 -12.94379 -12.70088 -12.47786 -12.29890 -11.99489 -11.91697 -11.63177 -11.40788 -11.19259 -11.00313 -10.88090 -10.84412 -10.78767 -10.13403 -9.98036 -9.33565 -9.05611 -8.63326 -8.54247 -8.12838 -6.21711 -4.22245 2.22312 2.84434 2.88092 3.17384 3.25024 3.25417 4.26160 4.38436 4.50257 4.58657 4.77622 4.80382 4.88749 5.05012 5.06594 5.09302 5.20050 5.28033 5.34618 5.39577 5.42127 5.49303 5.62279 5.65002 5.72594 5.77724 5.85410 5.88152 6.01651 6.11907 6.14651 6.39615 6.43481 6.83741 6.91603 7.19076 7.34394 7.45219 7.54916 7.79801 8.50052 8.87842 9.36279 10.91027 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023229 B = 0.003189 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.091058 B = 8777.650872 C = 9640.523689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.144 4.144 4 C 0.183 3.817 5 H 0.097 0.903 6 O -0.558 6.558 7 C -0.206 4.206 8 C -0.195 4.195 9 C -0.009 4.009 10 N -0.438 5.438 11 C 0.106 3.894 12 C 0.047 3.953 13 O -0.379 6.379 14 C 0.172 3.828 15 C -0.524 4.524 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.892 5.892 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.267 1.267 23 C 0.000 4.000 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.372 0.628 32 H 0.132 0.868 33 H 0.161 0.839 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.005 0.995 39 H 0.001 0.999 40 H 0.268 0.732 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 -19.507 14.833 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.182 4.182 4 C 0.123 3.877 5 H 0.115 0.885 6 O -0.363 6.363 7 C -0.213 4.213 8 C -0.219 4.219 9 C -0.139 4.139 10 N -0.113 5.113 11 C -0.015 4.015 12 C -0.031 4.031 13 O -0.298 6.298 14 C 0.097 3.903 15 C -0.562 4.562 16 H 0.101 0.899 17 C -0.128 4.128 18 N -0.530 5.530 19 Si 0.702 3.298 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.131 4.131 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.219 0.781 32 H 0.149 0.851 33 H 0.178 0.822 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.018 0.982 40 H 0.078 0.922 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.826 -19.460 13.963 24.117 hybrid contribution -1.596 0.719 0.446 1.806 sum -4.422 -18.741 14.409 24.049 Atomic orbital electron populations 1.21789 0.96125 1.01402 1.01759 1.21494 0.95422 0.96682 1.02358 1.22302 0.95840 0.97022 1.03015 1.20094 0.91550 0.88733 0.87283 0.88531 1.86543 1.77414 1.56626 1.15741 1.20079 1.10249 0.97402 0.93532 1.20548 1.09334 0.93614 0.98450 1.21849 1.08372 1.00736 0.82903 1.44063 1.49738 1.10858 1.06678 1.21700 0.97067 0.90077 0.92704 1.22545 0.95143 0.91854 0.93603 1.87854 1.35732 1.47131 1.59056 1.20652 0.87021 0.89464 0.93168 1.20847 0.97388 1.14481 1.23474 0.89852 1.24756 0.98699 0.94804 0.94570 1.69863 1.35867 1.19432 1.27838 0.86852 0.85520 0.78966 0.78431 1.19815 1.20578 1.19144 1.21593 1.06790 0.85298 0.99375 0.92893 0.92816 0.92919 0.92166 0.91503 0.91687 0.91083 0.78132 0.85064 0.82187 0.88325 0.88362 0.93702 0.93684 0.97711 0.98170 0.92192 0.82270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.97 5.83 -26.73 -0.16 -1.12 16 3 C -0.14 -1.25 4.88 -26.73 -0.13 -1.38 16 4 C 0.18 1.80 3.43 -27.88 -0.10 1.70 16 5 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 6 O -0.56 -5.65 12.77 -35.23 -0.45 -6.10 16 7 C -0.21 -2.35 5.18 -104.82 -0.54 -2.89 16 8 C -0.20 -2.19 10.25 -39.78 -0.41 -2.60 16 9 C -0.01 -0.10 11.43 -16.75 -0.19 -0.29 16 10 N -0.44 -5.53 2.75 -117.13 -0.32 -5.85 16 11 C 0.11 1.41 6.46 -4.05 -0.03 1.38 16 12 C 0.05 0.78 6.26 37.15 0.23 1.02 16 13 O -0.38 -8.39 10.33 -35.23 -0.36 -8.75 16 14 C 0.17 4.26 4.76 36.01 0.17 4.43 16 15 C -0.52 -15.27 9.99 -34.44 -0.34 -15.61 16 16 H 0.08 2.65 8.06 -52.49 -0.42 2.22 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 18 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 19 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 23 C 0.00 0.00 11.35 -16.75 -0.19 -0.19 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.55 7.82 -51.93 -0.41 0.14 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.37 2.69 8.30 45.56 0.38 3.07 16 32 H 0.13 1.19 7.71 -52.49 -0.40 0.78 16 33 H 0.16 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.01 0.13 7.20 -51.93 -0.37 -0.25 16 39 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 41 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -31.97 343.86 -7.54 -39.51 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.29 Total: 0.24 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -1.41 Total: -14.27 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.45 Total: -32.14 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.81 Total: -14.85 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.97 -7.54 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385789195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.584 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds