Wall clock time and date at job start Mon Mar 30 2020 06:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47612 * 2 1 4 4 C 1.53004 * 109.46773 * 120.00469 * 2 1 3 5 5 H 1.08996 * 109.47297 * 185.00117 * 4 2 1 6 6 O 1.42901 * 109.46873 * 304.99533 * 4 2 1 7 7 C 1.50700 * 109.47538 * 64.99367 * 4 2 1 8 8 C 1.40888 * 126.29169 * 280.00352 * 7 4 2 9 9 C 1.34849 * 107.41794 * 179.73433 * 8 7 4 10 10 N 1.36341 * 108.21665 * 0.42143 * 9 8 7 11 11 C 1.46500 * 125.63785 * 179.82817 * 10 9 8 12 12 C 1.52997 * 109.47473 * 269.69842 * 11 10 9 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00186 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47205 * 179.97438 * 14 13 12 16 16 H 1.08008 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00129 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00249 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99832 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46987 * 90.00549 * 19 17 15 21 21 H 1.48500 * 109.47073 * 210.00312 * 19 17 15 22 22 H 1.48500 * 109.47242 * 330.00296 * 19 17 15 23 23 C 1.34847 * 126.28863 * 99.99542 * 7 4 2 24 24 H 1.09002 * 109.46759 * 59.99470 * 1 2 3 25 25 H 1.08994 * 109.47702 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47039 * 300.00130 * 1 2 3 27 27 H 1.08996 * 109.46785 * 239.99647 * 2 1 3 28 28 H 1.09002 * 109.47354 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47491 * 300.00082 * 3 2 1 30 30 H 1.09004 * 109.47024 * 59.99861 * 3 2 1 31 31 H 0.96705 * 114.00304 * 60.00338 * 6 4 2 32 32 H 1.08005 * 126.29116 * 359.97438 * 8 7 4 33 33 H 1.08002 * 125.89837 * 180.25640 * 9 8 7 34 34 H 1.09002 * 109.47129 * 149.69584 * 11 10 9 35 35 H 1.08998 * 109.46845 * 29.70391 * 11 10 9 36 36 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 38 38 H 1.09001 * 109.46918 * 299.99649 * 14 13 12 39 39 H 1.08999 * 109.46857 * 59.99535 * 14 13 12 40 40 H 0.97001 * 119.99927 * 179.97438 * 18 17 15 41 41 H 1.07997 * 125.89423 * 0.03420 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1262 -0.6445 1.2953 6 8 1.4702 -0.1189 2.4130 7 6 1.6412 -2.1734 1.1889 8 6 0.3767 -2.7050 1.5108 9 6 0.4383 -4.0382 1.3176 10 7 1.6971 -4.3503 0.8972 11 6 2.1817 -5.6956 0.5787 12 6 2.7714 -6.3365 1.8366 13 8 3.2446 -7.6485 1.5257 14 6 3.8174 -8.3387 2.6382 15 6 4.2796 -9.7040 2.1985 16 1 4.1486 -10.0139 1.1722 17 6 4.8687 -10.5579 3.1066 18 7 5.2725 -11.7493 2.7228 19 14 5.0946 -10.0222 4.8819 20 1 3.8976 -10.4080 5.6714 21 1 6.2965 -10.6842 5.4496 22 1 5.2692 -8.5485 4.9358 23 6 2.4289 -3.2026 0.8168 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1301 1.4423 0.0005 29 1 1.6769 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 0.5040 -0.1508 2.4396 32 1 -0.4848 -2.1468 1.8465 33 1 -0.3694 -4.7383 1.4720 34 1 2.9506 -5.6320 -0.1913 35 1 1.3532 -6.3035 0.2153 36 1 2.0025 -6.4001 2.6066 37 1 3.5999 -5.7285 2.1998 38 1 4.6673 -7.7721 3.0187 39 1 3.0697 -8.4442 3.4243 40 1 5.6873 -12.3499 3.3617 41 1 3.4615 -3.1305 0.5087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385792862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:02 Heat of formation + Delta-G solvation = -60.697912 kcal Electronic energy + Delta-G solvation = -19851.174784 eV Core-core repulsion = 16731.839045 eV Total energy + Delta-G solvation = -3119.335739 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.38206 -38.30120 -37.15410 -33.89627 -33.41510 -32.55621 -29.61610 -28.99472 -27.57107 -27.24655 -25.48625 -22.80419 -21.97798 -20.62130 -20.16219 -19.64218 -17.61234 -17.02672 -16.45160 -15.66025 -15.52135 -15.27561 -15.01704 -14.55095 -14.25236 -13.93366 -13.69523 -13.14359 -12.96990 -12.85186 -12.74819 -12.44570 -12.32103 -12.23114 -11.98921 -11.44944 -11.39961 -11.19116 -11.08834 -10.96083 -10.78223 -10.77806 -10.07718 -9.96551 -9.32396 -9.04183 -8.62034 -8.52214 -8.12500 -6.20703 -4.21191 2.22488 2.85735 2.87604 3.18824 3.26452 3.27356 4.27482 4.42467 4.51582 4.61419 4.72144 4.76706 4.84558 5.05679 5.10270 5.10419 5.26057 5.33517 5.38142 5.43058 5.43984 5.49686 5.58655 5.68869 5.75668 5.78638 5.86264 5.87309 6.05206 6.09066 6.16835 6.39849 6.45341 6.85329 6.92080 7.19867 7.34957 7.46474 7.55701 7.80994 8.51154 8.88626 9.37392 10.91980 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.039434 B = 0.002968 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.879854 B = 9431.673276 C = 9644.549784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.145 4.145 4 C 0.186 3.814 5 H 0.097 0.903 6 O -0.557 6.557 7 C -0.202 4.202 8 C -0.194 4.194 9 C -0.009 4.009 10 N -0.438 5.438 11 C 0.107 3.893 12 C 0.047 3.953 13 O -0.380 6.380 14 C 0.172 3.828 15 C -0.524 4.524 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.892 5.892 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.266 1.266 23 C 0.001 3.999 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.370 0.630 32 H 0.132 0.868 33 H 0.160 0.840 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.005 0.995 39 H 0.001 0.999 40 H 0.268 0.732 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 23.599 -4.342 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.140 4.140 3 C -0.202 4.202 4 C 0.127 3.873 5 H 0.114 0.886 6 O -0.362 6.362 7 C -0.209 4.209 8 C -0.218 4.218 9 C -0.139 4.139 10 N -0.113 5.113 11 C -0.015 4.015 12 C -0.032 4.032 13 O -0.298 6.298 14 C 0.097 3.903 15 C -0.562 4.562 16 H 0.101 0.899 17 C -0.128 4.128 18 N -0.530 5.530 19 Si 0.702 3.298 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.130 4.130 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.218 0.782 32 H 0.149 0.851 33 H 0.178 0.822 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.018 0.982 40 H 0.078 0.922 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.993 23.062 -4.402 25.142 hybrid contribution -0.372 -0.021 1.073 1.135 sum -9.365 23.041 -3.329 25.093 Atomic orbital electron populations 1.21914 0.95170 1.02685 1.01401 1.21735 0.96673 0.96544 0.99007 1.21795 1.00849 0.95834 1.01719 1.20112 0.97241 0.85879 0.84105 0.88552 1.86550 1.25255 1.81075 1.43356 1.20029 0.95315 0.95321 1.10269 1.20554 0.97742 0.93434 1.10070 1.21850 0.87993 0.96829 1.07264 1.44053 1.10117 1.06445 1.50723 1.21691 1.01427 0.80163 0.98215 1.22547 0.97946 0.87178 0.95507 1.87847 1.79550 1.25005 1.37408 1.20651 0.91732 0.92891 0.85039 1.20845 1.39665 0.96289 0.99365 0.89866 1.24757 0.94766 0.94614 0.98700 1.69867 1.40354 1.07454 1.35348 0.86852 0.78429 0.79392 0.85105 1.19814 1.20594 1.19105 1.21603 0.97935 0.84476 1.08992 0.92856 0.91317 0.92866 0.90578 0.92842 0.93024 0.92155 0.78166 0.85064 0.82235 0.88404 0.88368 0.93662 0.93659 0.97689 0.98159 0.92204 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.42 37.16 0.31 -0.84 16 2 C -0.12 -1.00 2.74 -90.62 -0.25 -1.25 16 3 C -0.14 -1.10 9.09 37.15 0.34 -0.76 16 4 C 0.19 1.85 3.18 -27.88 -0.09 1.76 16 5 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 6 O -0.56 -5.91 12.70 -35.23 -0.45 -6.36 16 7 C -0.20 -2.28 4.83 -104.82 -0.51 -2.78 16 8 C -0.19 -2.11 8.40 -39.78 -0.33 -2.45 16 9 C -0.01 -0.11 11.43 -16.75 -0.19 -0.30 16 10 N -0.44 -5.46 2.75 -117.13 -0.32 -5.79 16 11 C 0.11 1.41 6.46 -4.04 -0.03 1.38 16 12 C 0.05 0.79 6.26 37.16 0.23 1.02 16 13 O -0.38 -8.45 10.33 -35.23 -0.36 -8.81 16 14 C 0.17 4.29 4.76 36.00 0.17 4.46 16 15 C -0.52 -15.32 9.99 -34.44 -0.34 -15.67 16 16 H 0.08 2.65 8.06 -52.48 -0.42 2.23 16 17 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 18 N -0.89 -27.16 13.96 55.43 0.77 -26.38 16 19 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 23 C 0.00 0.01 11.35 -16.75 -0.19 -0.18 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.56 5.78 -51.93 -0.30 0.26 16 26 H 0.05 0.35 6.72 -51.93 -0.35 0.00 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.48 7.82 -51.93 -0.41 0.08 16 31 H 0.37 2.98 6.56 45.56 0.30 3.28 16 32 H 0.13 1.17 7.56 -52.48 -0.40 0.77 16 33 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.01 0.13 7.20 -51.93 -0.37 -0.24 16 39 H 0.00 0.02 7.57 -51.93 -0.39 -0.38 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -31.93 335.30 -7.11 -39.04 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.16 Total: 0.32 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -0.97 Total: -13.56 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.45 Total: -32.17 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.81 Total: -15.17 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.93 -7.11 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385792862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.661 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds