Wall clock time and date at job start Mon Mar 30 2020 06:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47612 * 2 1 4 4 C 1.53004 * 109.46773 * 120.00469 * 2 1 3 5 5 H 1.08996 * 109.47297 * 185.00117 * 4 2 1 6 6 O 1.42901 * 109.46873 * 304.99533 * 4 2 1 7 7 C 1.50700 * 109.47538 * 64.99367 * 4 2 1 8 8 C 1.40888 * 126.29169 * 280.00352 * 7 4 2 9 9 C 1.34849 * 107.41794 * 179.73433 * 8 7 4 10 10 N 1.36341 * 108.21665 * 0.42143 * 9 8 7 11 11 C 1.46500 * 125.63785 * 179.82817 * 10 9 8 12 12 C 1.52997 * 109.47473 * 269.69842 * 11 10 9 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00186 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47205 * 179.97438 * 14 13 12 16 16 H 1.08008 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00129 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00249 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99832 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.46987 * 90.00549 * 19 17 15 21 21 H 1.48500 * 109.47073 * 210.00312 * 19 17 15 22 22 H 1.48500 * 109.47242 * 330.00296 * 19 17 15 23 23 C 1.34847 * 126.28863 * 99.99542 * 7 4 2 24 24 H 1.09002 * 109.46759 * 59.99470 * 1 2 3 25 25 H 1.08994 * 109.47702 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47039 * 300.00130 * 1 2 3 27 27 H 1.08996 * 109.46785 * 239.99647 * 2 1 3 28 28 H 1.09002 * 109.47354 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47491 * 300.00082 * 3 2 1 30 30 H 1.09004 * 109.47024 * 59.99861 * 3 2 1 31 31 H 0.96705 * 114.00304 * 60.00338 * 6 4 2 32 32 H 1.08005 * 126.29116 * 359.97438 * 8 7 4 33 33 H 1.08002 * 125.89837 * 180.25640 * 9 8 7 34 34 H 1.09002 * 109.47129 * 149.69584 * 11 10 9 35 35 H 1.08998 * 109.46845 * 29.70391 * 11 10 9 36 36 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 38 38 H 1.09001 * 109.46918 * 299.99649 * 14 13 12 39 39 H 1.08999 * 109.46857 * 59.99535 * 14 13 12 40 40 H 0.97001 * 119.99927 * 179.97438 * 18 17 15 41 41 H 1.07997 * 125.89423 * 0.03420 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1262 -0.6445 1.2953 6 8 1.4702 -0.1189 2.4130 7 6 1.6412 -2.1734 1.1889 8 6 0.3767 -2.7050 1.5108 9 6 0.4383 -4.0382 1.3176 10 7 1.6971 -4.3503 0.8972 11 6 2.1817 -5.6956 0.5787 12 6 2.7714 -6.3365 1.8366 13 8 3.2446 -7.6485 1.5257 14 6 3.8174 -8.3387 2.6382 15 6 4.2796 -9.7040 2.1985 16 1 4.1486 -10.0139 1.1722 17 6 4.8687 -10.5579 3.1066 18 7 5.2725 -11.7493 2.7228 19 14 5.0946 -10.0222 4.8819 20 1 3.8976 -10.4080 5.6714 21 1 6.2965 -10.6842 5.4496 22 1 5.2692 -8.5485 4.9358 23 6 2.4289 -3.2026 0.8168 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1301 1.4423 0.0005 29 1 1.6769 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 0.5040 -0.1508 2.4396 32 1 -0.4848 -2.1468 1.8465 33 1 -0.3694 -4.7383 1.4720 34 1 2.9506 -5.6320 -0.1913 35 1 1.3532 -6.3035 0.2153 36 1 2.0025 -6.4001 2.6066 37 1 3.5999 -5.7285 2.1998 38 1 4.6673 -7.7721 3.0187 39 1 3.0697 -8.4442 3.4243 40 1 5.6873 -12.3499 3.3617 41 1 3.4615 -3.1305 0.5087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385792862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:02 Heat of formation + Delta-G solvation = -81.398101 kcal Electronic energy + Delta-G solvation = -19852.072412 eV Core-core repulsion = 16731.839045 eV Total energy + Delta-G solvation = -3120.233366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.26112 -39.18414 -38.69357 -35.09398 -34.60248 -34.14044 -30.81869 -30.24837 -28.97320 -27.94892 -26.37205 -24.13042 -23.87091 -21.34292 -21.06367 -20.45668 -19.15575 -18.55472 -17.50366 -17.01649 -16.86715 -16.61843 -16.10382 -15.71833 -15.48853 -14.88141 -14.79015 -14.51100 -14.23716 -14.06558 -13.69793 -13.66445 -13.10174 -13.05020 -12.91592 -12.87015 -12.74133 -12.46204 -12.37223 -12.10449 -11.88355 -11.71018 -11.53045 -11.47469 -10.99179 -10.83487 -10.54490 -9.41849 -9.00131 -8.42299 -6.51236 1.29884 1.31144 1.33160 1.43701 1.86320 2.03162 2.24747 2.90127 3.10333 3.67939 3.70995 3.95561 3.99773 4.06554 4.14963 4.20679 4.24419 4.31643 4.42850 4.45632 4.56741 4.65576 4.70086 4.81985 4.84609 4.89439 4.90914 5.07395 5.12191 5.24778 5.28179 5.35079 5.43822 5.51297 5.60079 5.82400 6.07035 6.31958 6.43979 6.51436 6.59365 6.88564 7.12915 8.74410 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.039434 B = 0.002968 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.879854 B = 9431.673276 C = 9644.549784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.142 4.142 4 C 0.187 3.813 5 H 0.092 0.908 6 O -0.569 6.569 7 C -0.203 4.203 8 C -0.195 4.195 9 C -0.024 4.024 10 N -0.444 5.444 11 C 0.118 3.882 12 C 0.045 3.955 13 O -0.400 6.400 14 C 0.181 3.819 15 C -0.549 4.549 16 H 0.035 0.965 17 C 0.016 3.984 18 N -0.938 5.938 19 Si 0.953 3.047 20 H -0.258 1.258 21 H -0.272 1.272 22 H -0.248 1.248 23 C -0.020 4.020 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.381 0.619 32 H 0.151 0.849 33 H 0.176 0.824 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.013 0.987 39 H 0.013 0.987 40 H 0.274 0.726 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.602 25.609 -2.985 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.135 4.135 3 C -0.199 4.199 4 C 0.128 3.872 5 H 0.110 0.890 6 O -0.377 6.377 7 C -0.210 4.210 8 C -0.219 4.219 9 C -0.153 4.153 10 N -0.121 5.121 11 C -0.004 4.004 12 C -0.033 4.033 13 O -0.319 6.319 14 C 0.106 3.894 15 C -0.587 4.587 16 H 0.053 0.947 17 C -0.183 4.183 18 N -0.577 5.577 19 Si 0.774 3.226 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.172 1.172 23 C -0.149 4.149 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.230 0.770 32 H 0.168 0.832 33 H 0.193 0.807 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.031 0.969 40 H 0.084 0.916 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.781 25.101 -3.063 27.113 hybrid contribution -0.176 -0.611 0.552 0.843 sum -9.957 24.489 -2.511 26.555 Atomic orbital electron populations 1.21889 0.94418 1.02428 1.02178 1.21670 0.97274 0.96642 0.97884 1.21771 1.00845 0.95355 1.01972 1.20124 0.97099 0.85335 0.84657 0.89006 1.86527 1.26341 1.81074 1.43712 1.20265 0.95414 0.95831 1.09526 1.20846 0.98223 0.93388 1.09422 1.22265 0.88110 0.97629 1.07280 1.44030 1.10557 1.05980 1.51494 1.21512 1.01793 0.80662 0.96461 1.22776 0.98150 0.84704 0.97692 1.87791 1.79685 1.27590 1.36845 1.20359 0.92309 0.90998 0.85756 1.21119 1.40847 0.99077 0.97618 0.94695 1.25801 0.93826 0.94329 1.04321 1.70016 1.41133 1.08970 1.37603 0.85644 0.79072 0.79937 0.77929 1.18296 1.19665 1.17190 1.21939 0.98712 0.84621 1.09674 0.92303 0.92022 0.91908 0.91035 0.92893 0.92123 0.92496 0.76979 0.83174 0.80714 0.87821 0.87539 0.93120 0.93427 0.96948 0.96943 0.91641 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.42 71.98 0.61 -1.36 16 2 C -0.12 -1.73 2.74 -10.79 -0.03 -1.76 16 3 C -0.14 -1.93 9.09 71.98 0.65 -1.28 16 4 C 0.19 3.45 3.18 29.85 0.10 3.54 16 5 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 6 O -0.57 -11.10 12.70 -148.98 -1.89 -12.99 16 7 C -0.20 -4.26 4.83 -19.99 -0.10 -4.36 16 8 C -0.19 -3.86 8.40 22.14 0.19 -3.68 16 9 C -0.02 -0.51 11.43 83.21 0.95 0.44 16 10 N -0.44 -10.43 2.75 -524.48 -1.44 -11.87 16 11 C 0.12 2.97 6.46 86.38 0.56 3.52 16 12 C 0.04 1.45 6.26 71.98 0.45 1.90 16 13 O -0.40 -17.73 10.33 -148.98 -1.54 -19.27 16 14 C 0.18 8.93 4.76 71.24 0.34 9.27 16 15 C -0.55 -32.87 9.99 25.60 0.26 -32.61 16 16 H 0.03 2.34 8.06 -2.91 -0.02 2.32 16 17 C 0.02 0.93 5.47 84.65 0.46 1.39 16 18 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 19 Si 0.95 42.82 27.47 68.60 1.88 44.71 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.25 -10.37 6.54 99.48 0.65 -9.72 16 23 C -0.02 -0.45 11.35 83.21 0.94 0.50 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.89 5.78 -2.39 -0.01 0.88 16 26 H 0.06 0.68 6.72 -2.39 -0.02 0.67 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.82 7.82 -2.39 -0.02 0.80 16 31 H 0.38 5.35 6.56 -74.05 -0.49 4.86 16 32 H 0.15 2.30 7.56 -2.91 -0.02 2.28 16 33 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.11 2.49 8.14 -2.39 -0.02 2.48 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 39 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 40 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 41 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -69.04 335.30 3.15 -65.89 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.46 Total: 15.95 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 5.38 Total: -24.49 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -1.14 Total: -69.79 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -3.43 Total: -32.26 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.88 Total: 44.71 kcal Total: -69.04 3.15 -65.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385792862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.507 kcal (2) G-P(sol) polarization free energy of solvation -69.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds