Wall clock time and date at job start Mon Mar 30 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46973 * 2 1 4 4 C 1.53008 * 109.46742 * 119.99743 * 2 1 3 5 5 H 1.08997 * 109.47368 * 59.99779 * 4 2 1 6 6 O 1.42898 * 109.46861 * 299.99655 * 4 2 1 7 7 C 1.50700 * 109.46959 * 180.02562 * 4 2 1 8 8 C 1.40890 * 126.29136 * 84.97308 * 7 4 2 9 9 C 1.34856 * 107.41842 * 180.02562 * 8 7 4 10 10 N 1.36343 * 108.21378 * 0.02562 * 9 8 7 11 11 C 1.46500 * 125.63153 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47473 * 90.02303 * 11 10 9 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00186 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47205 * 179.97438 * 14 13 12 16 16 H 1.08008 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00129 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99722 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00218 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46964 * 89.99643 * 19 17 15 21 21 H 1.48499 * 109.47045 * 209.99599 * 19 17 15 22 22 H 1.48495 * 109.46904 * 329.99888 * 19 17 15 23 23 C 1.34850 * 126.29166 * 265.28834 * 7 4 2 24 24 H 1.09007 * 109.47132 * 300.00391 * 1 2 3 25 25 H 1.09000 * 109.47305 * 60.00041 * 1 2 3 26 26 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47279 * 239.99541 * 2 1 3 28 28 H 1.08995 * 109.47306 * 60.00172 * 3 2 1 29 29 H 1.09009 * 109.46561 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47112 * 299.99138 * 3 2 1 31 31 H 0.96701 * 114.00342 * 300.00153 * 6 4 2 32 32 H 1.08004 * 126.29267 * 359.97438 * 8 7 4 33 33 H 1.07993 * 125.88867 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47129 * 330.02045 * 11 10 9 35 35 H 1.08998 * 109.46845 * 210.02852 * 11 10 9 36 36 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 38 38 H 1.09001 * 109.46918 * 299.99649 * 14 13 12 39 39 H 1.08999 * 109.46857 * 59.99535 * 14 13 12 40 40 H 0.96998 * 119.99585 * 180.02562 * 18 17 15 41 41 H 1.08000 * 125.89321 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6766 -1.7489 1.2495 6 8 1.5636 -0.0475 2.4160 7 6 3.5469 -0.7207 1.2497 8 6 4.3804 0.3089 1.7295 9 6 5.6566 -0.0858 1.5451 10 7 5.6415 -1.3212 0.9685 11 6 6.8227 -2.1067 0.6023 12 6 7.2332 -2.9906 1.7817 13 8 8.3857 -3.7563 1.4247 14 6 8.8534 -4.6208 2.4620 15 6 10.0647 -5.3758 1.9787 16 1 10.4397 -5.2122 0.9791 17 6 10.6936 -6.2762 2.8121 18 7 10.2367 -6.4759 4.0291 19 14 12.1948 -7.2127 2.2127 20 1 13.4212 -6.4388 2.5326 21 1 12.2544 -8.5352 2.8856 22 1 12.1021 -7.4083 0.7437 23 6 4.3456 -1.7032 0.7855 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9563 0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.8490 0.8741 2.4821 32 1 4.0567 1.2431 2.1642 33 1 6.5384 0.4792 1.8086 34 1 7.6424 -1.4340 0.3498 35 1 6.5894 -2.7339 -0.2580 36 1 6.4135 -3.6633 2.0342 37 1 7.4664 -2.3632 2.6420 38 1 9.1197 -4.0276 3.3368 39 1 8.0673 -5.3276 2.7279 40 1 10.6794 -7.1091 4.6155 41 1 4.0156 -2.6331 0.3465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385792865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:05 Heat of formation + Delta-G solvation = -66.218701 kcal Electronic energy + Delta-G solvation = -19804.719351 eV Core-core repulsion = 16685.144213 eV Total energy + Delta-G solvation = -3119.575138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.32151 -38.24219 -36.94353 -33.86120 -33.37078 -32.56006 -29.51210 -28.70161 -27.34601 -26.89588 -25.41126 -22.76943 -22.33387 -20.58818 -20.10445 -19.55186 -17.56292 -16.54723 -16.40659 -15.59692 -15.38004 -15.23598 -14.86053 -14.51281 -14.19018 -13.89083 -13.62891 -13.17328 -12.94426 -12.82683 -12.60820 -12.28654 -12.19510 -11.98021 -11.89248 -11.40235 -11.19898 -11.03380 -10.94664 -10.93048 -10.80529 -10.73952 -10.17879 -10.03855 -9.23934 -8.99228 -8.44422 -8.32956 -8.05721 -6.19393 -4.22472 2.29294 2.93349 2.94566 3.25004 3.30267 3.35265 4.27776 4.45462 4.67286 4.73334 4.75868 4.82225 4.90837 5.12809 5.16502 5.17073 5.31443 5.41987 5.47057 5.48200 5.52595 5.59165 5.65685 5.72827 5.82743 5.90021 5.91010 6.02174 6.11345 6.13368 6.21406 6.45985 6.95511 6.98381 7.26089 7.29316 7.41947 7.60468 7.68548 8.02144 8.38634 8.88983 9.42676 10.92021 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.047871 B = 0.002742 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.764895 B =10208.439359 C =10294.015997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.152 4.152 4 C 0.187 3.813 5 H 0.097 0.903 6 O -0.556 6.556 7 C -0.202 4.202 8 C -0.193 4.193 9 C -0.009 4.009 10 N -0.437 5.437 11 C 0.107 3.893 12 C 0.051 3.949 13 O -0.395 6.395 14 C 0.198 3.802 15 C -0.519 4.519 16 H 0.067 0.933 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.910 3.090 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.000 4.000 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.370 0.630 32 H 0.131 0.869 33 H 0.160 0.840 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.266 0.734 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.077 14.817 -7.336 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.209 4.209 4 C 0.127 3.873 5 H 0.114 0.886 6 O -0.361 6.361 7 C -0.209 4.209 8 C -0.218 4.218 9 C -0.139 4.139 10 N -0.113 5.113 11 C -0.015 4.015 12 C -0.027 4.027 13 O -0.314 6.314 14 C 0.124 3.876 15 C -0.557 4.557 16 H 0.086 0.914 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.737 3.263 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.131 4.131 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.218 0.782 32 H 0.149 0.851 33 H 0.177 0.823 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.075 0.925 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.892 13.915 -7.332 22.360 hybrid contribution 1.040 -0.095 0.019 1.044 sum -14.853 13.821 -7.313 21.566 Atomic orbital electron populations 1.21779 0.94924 1.01750 1.01670 1.21750 0.95952 0.97340 0.98991 1.21885 1.02250 0.95527 1.01218 1.20107 0.87366 0.95849 0.83987 0.88555 1.86549 1.76343 1.29024 1.44215 1.20016 0.95473 0.96641 1.08782 1.20529 0.91892 1.00336 1.09008 1.21839 0.99122 0.87843 1.05133 1.44058 1.05898 1.14693 1.46611 1.21714 0.86191 0.95020 0.98574 1.22465 0.90711 0.94154 0.95411 1.87792 1.43019 1.57730 1.42883 1.20260 0.94325 0.87462 0.85600 1.21023 1.11350 1.22565 1.00789 0.91443 1.24967 0.98057 0.96715 0.94740 1.69964 1.40836 1.35793 1.06972 0.86297 0.82089 0.78900 0.78986 1.20372 1.20976 1.19581 1.21575 0.82478 1.00827 1.08203 0.92124 0.93088 0.92851 0.90626 0.92996 0.91335 0.93001 0.78219 0.85139 0.82275 0.88565 0.88594 0.93821 0.93832 0.97493 0.97480 0.92491 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.05 37.16 0.34 -0.80 16 2 C -0.12 -1.04 2.80 -90.62 -0.25 -1.30 16 3 C -0.15 -1.20 8.43 37.16 0.31 -0.88 16 4 C 0.19 1.93 3.24 -27.88 -0.09 1.84 16 5 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 6 O -0.56 -6.09 12.51 -35.23 -0.44 -6.53 16 7 C -0.20 -2.38 4.61 -104.82 -0.48 -2.86 16 8 C -0.19 -2.22 8.44 -39.78 -0.34 -2.56 16 9 C -0.01 -0.11 11.43 -16.75 -0.19 -0.31 16 10 N -0.44 -5.75 2.75 -117.13 -0.32 -6.07 16 11 C 0.11 1.48 6.46 -4.04 -0.03 1.46 16 12 C 0.05 0.92 6.26 37.16 0.23 1.16 16 13 O -0.39 -9.19 10.33 -35.23 -0.36 -9.56 16 14 C 0.20 5.36 5.69 36.00 0.20 5.56 16 15 C -0.52 -15.07 9.43 -34.44 -0.32 -15.40 16 16 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 19 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 C 0.00 0.00 11.35 -16.75 -0.19 -0.19 16 24 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.36 6.78 -51.93 -0.35 0.01 16 29 H 0.07 0.61 6.05 -51.92 -0.31 0.30 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.37 3.09 6.58 45.56 0.30 3.39 16 32 H 0.13 1.24 7.70 -52.48 -0.40 0.83 16 33 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -31.54 338.98 -7.42 -38.96 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.21 Total: 0.27 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.91 Total: -12.76 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.41 Total: -31.98 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.80 Total: -16.09 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.54 -7.42 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385792865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.263 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds