Wall clock time and date at job start Mon Mar 30 2020 06:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46973 * 2 1 4 4 C 1.53008 * 109.46742 * 119.99743 * 2 1 3 5 5 H 1.08997 * 109.47368 * 59.99779 * 4 2 1 6 6 O 1.42898 * 109.46861 * 299.99655 * 4 2 1 7 7 C 1.50700 * 109.46959 * 180.02562 * 4 2 1 8 8 C 1.40890 * 126.29136 * 84.97308 * 7 4 2 9 9 C 1.34856 * 107.41842 * 180.02562 * 8 7 4 10 10 N 1.36343 * 108.21378 * 0.02562 * 9 8 7 11 11 C 1.46500 * 125.63153 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47473 * 90.02303 * 11 10 9 13 13 O 1.42898 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00186 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47205 * 179.97438 * 14 13 12 16 16 H 1.08008 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00129 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99722 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00218 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46964 * 89.99643 * 19 17 15 21 21 H 1.48499 * 109.47045 * 209.99599 * 19 17 15 22 22 H 1.48495 * 109.46904 * 329.99888 * 19 17 15 23 23 C 1.34850 * 126.29166 * 265.28834 * 7 4 2 24 24 H 1.09007 * 109.47132 * 300.00391 * 1 2 3 25 25 H 1.09000 * 109.47305 * 60.00041 * 1 2 3 26 26 H 1.08997 * 109.47370 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47279 * 239.99541 * 2 1 3 28 28 H 1.08995 * 109.47306 * 60.00172 * 3 2 1 29 29 H 1.09009 * 109.46561 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47112 * 299.99138 * 3 2 1 31 31 H 0.96701 * 114.00342 * 300.00153 * 6 4 2 32 32 H 1.08004 * 126.29267 * 359.97438 * 8 7 4 33 33 H 1.07993 * 125.88867 * 180.02562 * 9 8 7 34 34 H 1.09002 * 109.47129 * 330.02045 * 11 10 9 35 35 H 1.08998 * 109.46845 * 210.02852 * 11 10 9 36 36 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 37 37 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 38 38 H 1.09001 * 109.46918 * 299.99649 * 14 13 12 39 39 H 1.08999 * 109.46857 * 59.99535 * 14 13 12 40 40 H 0.96998 * 119.99585 * 180.02562 * 18 17 15 41 41 H 1.08000 * 125.89321 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6766 -1.7489 1.2495 6 8 1.5636 -0.0475 2.4160 7 6 3.5469 -0.7207 1.2497 8 6 4.3804 0.3089 1.7295 9 6 5.6566 -0.0858 1.5451 10 7 5.6415 -1.3212 0.9685 11 6 6.8227 -2.1067 0.6023 12 6 7.2332 -2.9906 1.7817 13 8 8.3857 -3.7563 1.4247 14 6 8.8534 -4.6208 2.4620 15 6 10.0647 -5.3758 1.9787 16 1 10.4397 -5.2122 0.9791 17 6 10.6936 -6.2762 2.8121 18 7 10.2367 -6.4759 4.0291 19 14 12.1948 -7.2127 2.2127 20 1 13.4212 -6.4388 2.5326 21 1 12.2544 -8.5352 2.8856 22 1 12.1021 -7.4083 0.7437 23 6 4.3456 -1.7032 0.7855 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9563 0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.8490 0.8741 2.4821 32 1 4.0567 1.2431 2.1642 33 1 6.5384 0.4792 1.8086 34 1 7.6424 -1.4340 0.3498 35 1 6.5894 -2.7339 -0.2580 36 1 6.4135 -3.6633 2.0342 37 1 7.4664 -2.3632 2.6420 38 1 9.1197 -4.0276 3.3368 39 1 8.0673 -5.3276 2.7279 40 1 10.6794 -7.1091 4.6155 41 1 4.0156 -2.6331 0.3465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385792865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:05 Heat of formation + Delta-G solvation = -85.752756 kcal Electronic energy + Delta-G solvation = -19805.566411 eV Core-core repulsion = 16685.144213 eV Total energy + Delta-G solvation = -3120.422198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.26678 -39.15912 -38.63614 -35.15568 -34.60813 -34.10123 -30.55858 -30.06950 -28.72142 -27.92121 -26.37953 -24.61003 -23.89394 -21.35926 -21.07608 -20.42047 -18.78197 -18.50063 -17.51494 -16.98478 -16.89145 -16.53166 -16.11238 -15.80317 -15.43964 -14.93941 -14.73916 -14.42431 -14.16987 -13.84618 -13.65296 -13.61440 -13.05463 -12.96268 -12.91049 -12.85845 -12.70969 -12.52453 -12.42676 -12.12714 -12.05654 -11.68867 -11.54947 -11.38374 -10.96699 -10.84923 -10.39930 -9.41129 -8.99914 -8.37229 -6.51010 1.29657 1.39167 1.41826 1.53965 1.87958 2.03255 2.33081 2.97035 3.18847 3.67191 3.69561 3.96286 4.02553 4.05779 4.15691 4.20086 4.26090 4.31518 4.42076 4.57034 4.61513 4.65054 4.79173 4.81912 4.85609 4.90785 5.06149 5.07845 5.13783 5.25273 5.27953 5.43212 5.48670 5.51794 5.60735 5.86580 6.06908 6.31694 6.36018 6.46825 6.69966 6.88938 7.20976 8.75169 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.047871 B = 0.002742 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.764895 B =10208.439359 C =10294.015997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.149 4.149 4 C 0.188 3.812 5 H 0.091 0.909 6 O -0.568 6.568 7 C -0.202 4.202 8 C -0.194 4.194 9 C -0.025 4.025 10 N -0.445 5.445 11 C 0.122 3.878 12 C 0.048 3.952 13 O -0.402 6.402 14 C 0.211 3.789 15 C -0.551 4.551 16 H 0.067 0.933 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.987 3.013 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.262 1.262 23 C -0.021 4.021 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.381 0.619 32 H 0.150 0.850 33 H 0.175 0.825 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.038 0.962 37 H 0.040 0.960 38 H -0.013 1.013 39 H -0.013 1.013 40 H 0.272 0.728 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.969 15.409 -8.272 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.135 4.135 3 C -0.206 4.206 4 C 0.128 3.872 5 H 0.109 0.891 6 O -0.376 6.376 7 C -0.209 4.209 8 C -0.218 4.218 9 C -0.154 4.154 10 N -0.121 5.121 11 C -0.001 4.001 12 C -0.030 4.030 13 O -0.322 6.322 14 C 0.136 3.864 15 C -0.589 4.589 16 H 0.085 0.915 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.809 3.191 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.186 1.186 23 C -0.151 4.151 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.230 0.770 32 H 0.168 0.832 33 H 0.192 0.808 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.005 0.995 39 H 0.004 0.996 40 H 0.081 0.919 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.813 14.541 -8.273 23.021 hybrid contribution 0.888 -0.201 0.360 0.979 sum -14.925 14.340 -7.912 22.159 Atomic orbital electron populations 1.21753 0.94276 1.01814 1.01999 1.21680 0.96397 0.97571 0.97830 1.21853 1.01532 0.95110 1.02074 1.20122 0.86477 0.95951 0.84656 0.89098 1.86526 1.76474 1.30000 1.44551 1.20269 0.96239 0.96429 1.07988 1.20828 0.91598 1.00959 1.08425 1.22259 1.00193 0.87763 1.05176 1.44043 1.05670 1.14976 1.47453 1.21510 0.87099 0.94799 0.96647 1.22694 0.88679 0.93996 0.97597 1.87736 1.45022 1.57669 1.41735 1.19879 0.93546 0.87244 0.85771 1.21379 1.12504 1.23815 1.01162 0.91501 1.26020 1.01346 0.97307 0.94664 1.70076 1.42380 1.36348 1.08219 0.85127 0.77670 0.77475 0.78818 1.19179 1.19995 1.18618 1.21923 0.82494 1.01699 1.08944 0.92430 0.92071 0.92975 0.90900 0.92008 0.92337 0.92322 0.76988 0.83193 0.80785 0.87312 0.87537 0.94340 0.94160 0.99497 0.99563 0.91919 0.81358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.05 71.98 0.65 -1.36 16 2 C -0.12 -1.83 2.80 -10.79 -0.03 -1.86 16 3 C -0.15 -2.08 8.43 71.98 0.61 -1.47 16 4 C 0.19 3.68 3.24 29.85 0.10 3.78 16 5 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 6 O -0.57 -11.72 12.51 -148.98 -1.86 -13.59 16 7 C -0.20 -4.55 4.61 -19.99 -0.09 -4.64 16 8 C -0.19 -4.18 8.44 22.14 0.19 -3.99 16 9 C -0.02 -0.58 11.43 83.21 0.95 0.37 16 10 N -0.44 -11.31 2.75 -524.49 -1.44 -12.75 16 11 C 0.12 3.28 6.46 86.38 0.56 3.84 16 12 C 0.05 1.76 6.26 71.98 0.45 2.21 16 13 O -0.40 -19.03 10.33 -148.98 -1.54 -20.57 16 14 C 0.21 11.77 5.69 71.24 0.41 12.17 16 15 C -0.55 -32.39 9.43 25.60 0.24 -32.15 16 16 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 17 C 0.01 0.30 5.46 84.65 0.46 0.77 16 18 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 19 Si 0.99 43.65 29.54 68.60 2.03 45.68 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 C -0.02 -0.51 11.35 83.21 0.94 0.44 16 24 H 0.06 0.86 7.68 -2.38 -0.02 0.84 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 0.73 6.78 -2.39 -0.02 0.71 16 29 H 0.06 0.95 6.05 -2.38 -0.01 0.93 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.38 5.71 6.58 -74.06 -0.49 5.23 16 32 H 0.15 2.54 7.70 -2.91 -0.02 2.51 16 33 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 39 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.17 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -67.01 338.98 3.41 -63.60 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.51 Total: 15.06 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 5.43 Total: -21.90 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -1.16 Total: -68.28 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -3.40 Total: -34.16 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -67.01 3.41 -63.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385792865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.153 kcal (2) G-P(sol) polarization free energy of solvation -67.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds