Wall clock time and date at job start Mon Mar 30 2020 06:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47409 * 2 1 4 4 C 1.50699 * 109.46812 * 120.00309 * 2 1 3 5 5 H 1.07999 * 120.00168 * 120.00341 * 4 2 1 6 6 C 1.37880 * 120.00230 * 299.99387 * 4 2 1 7 7 N 1.31522 * 119.99403 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00378 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47174 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46994 * 120.00296 * 8 6 4 11 11 H 1.48500 * 109.47223 * 240.00255 * 8 6 4 12 12 N 1.46903 * 109.47060 * 239.99842 * 2 1 3 13 13 C 1.46892 * 110.99879 * 85.97524 * 12 2 1 14 14 H 1.09003 * 109.47129 * 342.76257 * 13 12 2 15 15 C 1.50696 * 109.47462 * 222.76377 * 13 12 2 16 16 C 1.33391 * 125.20606 * 139.71976 * 15 13 12 17 17 C 1.38429 * 114.92027 * 179.85909 * 16 15 13 18 18 C 1.33389 * 114.91888 * 0.43035 * 17 16 15 19 19 S 1.75882 * 109.59440 * 359.77140 * 18 17 16 20 20 C 1.53004 * 109.47144 * 102.76102 * 13 12 2 21 21 C 1.53001 * 109.46920 * 54.52671 * 20 13 12 22 22 C 1.53000 * 109.46967 * 174.52702 * 20 13 12 23 23 C 1.53000 * 109.47273 * 294.52754 * 20 13 12 24 24 H 1.08998 * 109.47409 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46775 * 300.00225 * 1 2 3 26 26 H 1.08999 * 109.46695 * 59.99756 * 1 2 3 27 27 H 0.97007 * 119.99345 * 179.97438 * 7 6 4 28 28 H 1.00901 * 110.99741 * 322.02085 * 12 2 1 29 29 H 1.07995 * 122.54040 * 0.02562 * 16 15 13 30 30 H 1.08001 * 122.53601 * 180.19833 * 17 16 15 31 31 H 1.08000 * 125.20125 * 179.79322 * 18 17 16 32 32 H 1.08999 * 109.46538 * 60.00317 * 21 20 13 33 33 H 1.08997 * 109.46658 * 179.97438 * 21 20 13 34 34 H 1.08996 * 109.46712 * 300.00044 * 21 20 13 35 35 H 1.08998 * 109.47610 * 60.00356 * 22 20 13 36 36 H 1.09001 * 109.47066 * 180.02562 * 22 20 13 37 37 H 1.08998 * 109.47260 * 299.99825 * 22 20 13 38 38 H 1.08997 * 109.47296 * 64.18421 * 23 20 13 39 39 H 1.08991 * 109.47463 * 184.18784 * 23 20 13 40 40 H 1.09008 * 109.47138 * 304.18746 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1197 4.0080 9 1 3.1482 -2.2858 3.6038 10 1 3.1472 -0.1859 4.8161 11 1 1.1677 -1.5867 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 2.1044 0.2280 -2.3410 14 1 1.5102 1.1182 -2.1348 15 6 1.5754 -0.4538 -3.5765 16 6 0.8128 0.1232 -4.5064 17 6 0.4490 -0.7020 -5.5567 18 6 0.9087 -1.9514 -5.4750 19 16 1.8630 -2.1342 -4.0089 20 6 3.5637 0.6294 -2.5653 21 6 4.4208 -0.6286 -2.7192 22 6 3.6701 1.4775 -3.8343 23 6 4.0594 1.4408 -1.3666 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7083 1.1609 3.4845 28 1 1.4401 -1.4888 -1.4191 29 1 0.5048 1.1565 -4.4459 30 1 -0.1639 -0.3609 -6.3779 31 1 0.7236 -2.7314 -6.1987 32 1 4.0676 -1.2065 -3.5732 33 1 5.4603 -0.3425 -2.8794 34 1 4.3450 -1.2327 -1.8152 35 1 3.0595 2.3737 -3.7247 36 1 4.7097 1.7632 -3.9943 37 1 3.3169 0.8995 -4.6882 38 1 4.0537 0.8131 -0.4755 39 1 5.0739 1.7898 -1.5586 40 1 3.4037 2.2977 -1.2116 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390240881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:00 Heat of formation + Delta-G solvation = 20.591363 kcal Electronic energy + Delta-G solvation = -19244.353966 eV Core-core repulsion = 16571.296066 eV Total energy + Delta-G solvation = -2673.057900 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.85814 -36.75037 -34.68573 -32.18356 -30.07253 -27.89255 -26.70521 -26.49105 -25.15599 -24.45247 -22.58015 -20.35116 -18.88805 -18.43825 -17.02049 -15.95622 -15.28666 -14.74433 -14.61989 -14.31772 -13.69588 -13.34624 -12.97571 -12.49442 -12.44379 -12.27741 -12.17315 -11.78959 -11.63065 -11.55122 -11.42098 -11.02826 -10.95124 -10.87268 -10.57207 -10.38499 -10.37109 -10.20369 -10.11098 -9.95977 -9.86105 -8.94157 -8.35475 -8.32459 -8.13942 -7.26195 -5.97310 -3.99919 1.24383 1.88588 2.29844 2.95945 3.32305 3.40447 3.45488 4.44986 4.95738 5.09822 5.20880 5.34345 5.40159 5.49077 5.70556 5.73051 5.79790 5.96243 6.02896 6.16170 6.25508 6.30760 6.33217 6.34435 6.50159 6.62098 6.62520 6.67804 6.69306 6.73995 6.86645 7.01156 7.12511 7.16623 7.38139 7.75490 7.90537 8.28527 8.51224 8.61226 9.07684 9.65355 11.09723 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023475 B = 0.006108 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.459173 B = 4583.369542 C = 4933.863063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.041 0.959 4 C -0.491 4.491 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.287 1.287 12 N -0.672 5.672 13 C 0.162 3.838 14 H 0.063 0.937 15 C -0.155 4.155 16 C -0.154 4.154 17 C -0.131 4.131 18 C -0.243 4.243 19 S 0.127 5.873 20 C -0.047 4.047 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.136 4.136 24 H 0.026 0.974 25 H 0.089 0.911 26 H 0.003 0.997 27 H 0.258 0.742 28 H 0.327 0.673 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.156 0.844 32 H 0.048 0.952 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -1.562 -14.494 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.059 0.941 4 C -0.530 4.530 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.302 5.302 13 C 0.049 3.951 14 H 0.081 0.919 15 C -0.273 4.273 16 C -0.185 4.185 17 C -0.162 4.162 18 C -0.378 4.378 19 S 0.391 5.609 20 C -0.049 4.049 21 C -0.195 4.195 22 C -0.200 4.200 23 C -0.193 4.193 24 H 0.045 0.955 25 H 0.107 0.893 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.174 0.826 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.300 -2.593 -13.515 14.152 hybrid contribution -1.677 0.935 -0.102 1.923 sum 1.623 -1.659 -13.617 13.814 Atomic orbital electron populations 1.22462 1.00912 0.99162 1.00403 1.19333 0.89407 0.94661 0.86285 0.94112 1.21165 1.29997 1.12320 0.89475 0.91904 1.24933 0.95376 0.95196 0.98970 1.69899 1.37395 1.23261 1.23151 0.86496 0.78494 0.79691 0.83046 1.19756 1.21216 1.21311 1.60978 1.57369 1.08882 1.02986 1.20222 0.94696 0.94657 0.85493 0.91940 1.25092 1.03264 0.96964 1.01988 1.20074 1.01917 1.01390 0.95090 1.20067 1.02754 0.93307 1.00071 1.25689 1.07327 1.01237 1.03573 1.84429 1.49717 1.09839 1.16926 1.20434 0.94215 0.95515 0.94702 1.21876 0.97530 0.97390 1.02733 1.21937 1.00868 0.99468 0.97696 1.21831 0.98894 0.99650 0.98946 0.95459 0.89277 0.97767 0.93197 0.85545 0.84876 0.85092 0.82611 0.93307 0.94084 0.90448 0.93277 0.93162 0.92889 0.89931 0.94049 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.93 37.16 0.33 -3.74 16 2 C 0.21 5.06 1.64 -68.86 -0.11 4.95 16 3 H 0.04 1.06 6.39 -51.93 -0.33 0.73 16 4 C -0.49 -13.13 8.84 -34.44 -0.30 -13.44 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 N -0.67 -13.59 4.73 -102.17 -0.48 -14.07 16 13 C 0.16 2.83 1.74 -68.87 -0.12 2.71 16 14 H 0.06 1.20 7.21 -51.93 -0.37 0.82 16 15 C -0.15 -2.40 3.59 -36.00 -0.13 -2.53 16 16 C -0.15 -2.19 9.25 -41.21 -0.38 -2.57 16 17 C -0.13 -1.64 10.18 -41.21 -0.42 -2.06 16 18 C -0.24 -3.00 11.23 29.04 0.33 -2.67 16 19 S 0.13 1.80 20.15 -107.50 -2.17 -0.37 16 20 C -0.05 -0.76 0.62 -154.51 -0.10 -0.86 16 21 C -0.14 -2.16 7.89 37.16 0.29 -1.86 16 22 C -0.14 -1.97 8.02 37.16 0.30 -1.68 16 23 C -0.14 -2.37 7.29 37.16 0.27 -2.10 16 24 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 26 H 0.00 0.07 7.85 -51.93 -0.41 -0.33 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.33 6.60 7.16 -39.29 -0.28 6.32 16 29 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.05 0.72 5.54 -51.93 -0.29 0.43 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.37 7.46 -51.93 -0.39 0.98 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.73 6.60 -51.93 -0.34 0.38 16 38 H 0.08 1.69 7.12 -51.93 -0.37 1.32 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.04 0.81 8.03 -51.92 -0.42 0.39 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -27.05 322.00 -8.77 -35.82 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.44 Total: 6.57 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -0.14 Total: -24.43 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.14 Total: -38.72 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.17 Total: -0.37 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.05 -8.77 -35.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390240881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.410 kcal (2) G-P(sol) polarization free energy of solvation -27.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds