Wall clock time and date at job start Mon Mar 30 2020 06:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47409 * 2 1 4 4 C 1.50699 * 109.46812 * 120.00309 * 2 1 3 5 5 H 1.07999 * 120.00168 * 120.00341 * 4 2 1 6 6 C 1.37880 * 120.00230 * 299.99387 * 4 2 1 7 7 N 1.31522 * 119.99403 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00378 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47174 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46994 * 120.00296 * 8 6 4 11 11 H 1.48500 * 109.47223 * 240.00255 * 8 6 4 12 12 N 1.46903 * 109.47060 * 239.99842 * 2 1 3 13 13 C 1.46892 * 110.99879 * 85.97524 * 12 2 1 14 14 H 1.09003 * 109.47129 * 342.76257 * 13 12 2 15 15 C 1.50696 * 109.47462 * 222.76377 * 13 12 2 16 16 C 1.33391 * 125.20606 * 139.71976 * 15 13 12 17 17 C 1.38429 * 114.92027 * 179.85909 * 16 15 13 18 18 C 1.33389 * 114.91888 * 0.43035 * 17 16 15 19 19 S 1.75882 * 109.59440 * 359.77140 * 18 17 16 20 20 C 1.53004 * 109.47144 * 102.76102 * 13 12 2 21 21 C 1.53001 * 109.46920 * 54.52671 * 20 13 12 22 22 C 1.53000 * 109.46967 * 174.52702 * 20 13 12 23 23 C 1.53000 * 109.47273 * 294.52754 * 20 13 12 24 24 H 1.08998 * 109.47409 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46775 * 300.00225 * 1 2 3 26 26 H 1.08999 * 109.46695 * 59.99756 * 1 2 3 27 27 H 0.97007 * 119.99345 * 179.97438 * 7 6 4 28 28 H 1.00901 * 110.99741 * 322.02085 * 12 2 1 29 29 H 1.07995 * 122.54040 * 0.02562 * 16 15 13 30 30 H 1.08001 * 122.53601 * 180.19833 * 17 16 15 31 31 H 1.08000 * 125.20125 * 179.79322 * 18 17 16 32 32 H 1.08999 * 109.46538 * 60.00317 * 21 20 13 33 33 H 1.08997 * 109.46658 * 179.97438 * 21 20 13 34 34 H 1.08996 * 109.46712 * 300.00044 * 21 20 13 35 35 H 1.08998 * 109.47610 * 60.00356 * 22 20 13 36 36 H 1.09001 * 109.47066 * 180.02562 * 22 20 13 37 37 H 1.08998 * 109.47260 * 299.99825 * 22 20 13 38 38 H 1.08997 * 109.47296 * 64.18421 * 23 20 13 39 39 H 1.08991 * 109.47463 * 184.18784 * 23 20 13 40 40 H 1.09008 * 109.47138 * 304.18746 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1197 4.0080 9 1 3.1482 -2.2858 3.6038 10 1 3.1472 -0.1859 4.8161 11 1 1.1677 -1.5867 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 2.1044 0.2280 -2.3410 14 1 1.5102 1.1182 -2.1348 15 6 1.5754 -0.4538 -3.5765 16 6 0.8128 0.1232 -4.5064 17 6 0.4490 -0.7020 -5.5567 18 6 0.9087 -1.9514 -5.4750 19 16 1.8630 -2.1342 -4.0089 20 6 3.5637 0.6294 -2.5653 21 6 4.4208 -0.6286 -2.7192 22 6 3.6701 1.4775 -3.8343 23 6 4.0594 1.4408 -1.3666 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7083 1.1609 3.4845 28 1 1.4401 -1.4888 -1.4191 29 1 0.5048 1.1565 -4.4459 30 1 -0.1639 -0.3609 -6.3779 31 1 0.7236 -2.7314 -6.1987 32 1 4.0676 -1.2065 -3.5732 33 1 5.4603 -0.3425 -2.8794 34 1 4.3450 -1.2327 -1.8152 35 1 3.0595 2.3737 -3.7247 36 1 4.7097 1.7632 -3.9943 37 1 3.3169 0.8995 -4.6882 38 1 4.0537 0.8131 -0.4755 39 1 5.0739 1.7898 -1.5586 40 1 3.4037 2.2977 -1.2116 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390240881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:00 Heat of formation + Delta-G solvation = 6.692125 kcal Electronic energy + Delta-G solvation = -19244.956682 eV Core-core repulsion = 16571.296066 eV Total energy + Delta-G solvation = -2673.660616 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18368 -37.93671 -36.41793 -34.05152 -31.49888 -29.43786 -28.02548 -27.75013 -27.20015 -25.82712 -23.77272 -22.20156 -20.02934 -19.72814 -18.60196 -17.60604 -16.80037 -16.31554 -15.95908 -15.79058 -15.07641 -14.82734 -14.49166 -14.15612 -13.73595 -13.53110 -13.46331 -13.29778 -13.05330 -12.93165 -12.84296 -12.78661 -12.57540 -12.41331 -12.33332 -12.12250 -11.83021 -11.75101 -11.45017 -11.43497 -11.39422 -10.89597 -10.44521 -9.45220 -9.23533 -8.92627 -8.06658 -6.15874 0.17790 0.80211 1.24849 1.41615 1.44230 1.55673 1.92441 2.45756 3.22441 3.56215 3.77464 4.08874 4.21091 4.31009 4.40895 4.58238 4.69933 4.74409 4.77211 4.83636 4.86557 4.88284 4.95555 5.03674 5.12570 5.15207 5.25527 5.28360 5.32721 5.38961 5.44325 5.48886 5.65038 5.66206 5.71416 5.77295 5.86874 6.31733 6.66854 6.82712 6.98371 7.53448 8.99118 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023475 B = 0.006108 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.459173 B = 4583.369542 C = 4933.863063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.221 3.779 3 H 0.016 0.984 4 C -0.504 4.504 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.669 5.669 13 C 0.166 3.834 14 H 0.041 0.959 15 C -0.182 4.182 16 C -0.147 4.147 17 C -0.138 4.138 18 C -0.226 4.226 19 S 0.110 5.890 20 C -0.047 4.047 21 C -0.131 4.131 22 C -0.133 4.133 23 C -0.130 4.130 24 H 0.026 0.974 25 H 0.062 0.938 26 H 0.018 0.982 27 H 0.259 0.741 28 H 0.326 0.674 29 H 0.139 0.861 30 H 0.160 0.840 31 H 0.186 0.814 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.115 -2.223 -16.505 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.113 3.887 3 H 0.033 0.967 4 C -0.542 4.542 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.299 5.299 13 C 0.055 3.945 14 H 0.058 0.942 15 C -0.300 4.300 16 C -0.178 4.178 17 C -0.168 4.168 18 C -0.362 4.362 19 S 0.373 5.627 20 C -0.048 4.048 21 C -0.189 4.189 22 C -0.190 4.190 23 C -0.187 4.187 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.144 0.856 29 H 0.157 0.843 30 H 0.177 0.823 31 H 0.203 0.797 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.495 -3.259 -15.540 16.258 hybrid contribution -1.761 1.143 0.440 2.145 sum 1.734 -2.115 -15.099 15.345 Atomic orbital electron populations 1.22287 1.00839 0.98817 0.99732 1.19022 0.89210 0.93260 0.87253 0.96656 1.21425 1.29820 1.12116 0.90884 0.92853 1.25638 0.95611 0.95866 1.01642 1.70018 1.38287 1.24362 1.23686 0.85560 0.77989 0.78672 0.79699 1.19388 1.20926 1.20905 1.60856 1.56781 1.09130 1.03091 1.20098 0.95532 0.93348 0.85556 0.94156 1.24806 1.05363 0.97936 1.01927 1.20320 1.00589 1.01928 0.94999 1.20320 1.03067 0.93061 1.00330 1.26052 1.05577 1.01925 1.02603 1.84476 1.50720 1.09002 1.18476 1.20442 0.93290 0.95937 0.95153 1.21793 0.98381 0.96828 1.01858 1.21837 1.01936 0.98997 0.96263 1.21747 1.00013 0.98739 0.98211 0.95479 0.91921 0.96303 0.93198 0.85581 0.84342 0.82262 0.79685 0.92297 0.92588 0.93006 0.93163 0.91649 0.92337 0.93610 0.91970 0.94740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.71 8.93 71.98 0.64 -7.06 16 2 C 0.22 10.99 1.64 44.17 0.07 11.06 16 3 H 0.02 0.85 6.39 -2.39 -0.02 0.83 16 4 C -0.50 -27.69 8.84 25.60 0.23 -27.46 16 5 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -53.21 11.32 21.45 0.24 -52.97 16 8 Si 0.95 44.30 29.54 68.60 2.03 46.32 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 N -0.67 -27.72 4.73 -477.16 -2.26 -29.98 16 13 C 0.17 5.87 1.74 44.17 0.08 5.95 16 14 H 0.04 1.59 7.21 -2.39 -0.02 1.57 16 15 C -0.18 -5.45 3.59 24.59 0.09 -5.36 16 16 C -0.15 -3.86 9.25 21.22 0.20 -3.66 16 17 C -0.14 -2.98 10.18 21.22 0.22 -2.76 16 18 C -0.23 -4.81 11.23 66.72 0.75 -4.06 16 19 S 0.11 2.92 20.15 -56.49 -1.14 1.78 16 20 C -0.05 -1.49 0.62 -52.18 -0.03 -1.53 16 21 C -0.13 -4.01 7.89 71.98 0.57 -3.44 16 22 C -0.13 -3.45 8.02 71.98 0.58 -2.87 16 23 C -0.13 -4.61 7.29 71.98 0.52 -4.09 16 24 H 0.03 1.27 8.13 -2.39 -0.02 1.25 16 25 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 26 H 0.02 0.82 7.85 -2.39 -0.02 0.80 16 27 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 28 H 0.33 13.40 7.16 -89.69 -0.64 12.76 16 29 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.19 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.06 1.67 5.54 -2.39 -0.01 1.66 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.84 7.46 -2.39 -0.02 1.82 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.47 6.60 -2.39 -0.02 1.45 16 38 H 0.04 1.95 7.12 -2.39 -0.02 1.93 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.03 1.26 8.03 -2.38 -0.02 1.24 16 Total: -1.00 -58.73 322.00 3.59 -55.14 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.37 Total: 23.98 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 4.35 Total: -44.27 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -2.02 Total: -82.94 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.14 Total: 1.78 kcal Total: -58.73 3.59 -55.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390240881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.828 kcal (2) G-P(sol) polarization free energy of solvation -58.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds