Wall clock time and date at job start Mon Mar 30 2020 06:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47492 * 2 1 4 4 C 1.50697 * 109.46909 * 239.99342 * 2 1 3 5 5 H 1.07999 * 120.00589 * 240.00045 * 4 2 1 6 6 C 1.37888 * 119.99748 * 60.00609 * 4 2 1 7 7 N 1.31509 * 119.99605 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99832 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47453 * 89.99522 * 8 6 4 10 10 H 1.48503 * 109.46921 * 209.99961 * 8 6 4 11 11 H 1.48504 * 109.47206 * 329.99277 * 8 6 4 12 12 N 1.46906 * 109.47258 * 119.99940 * 2 1 3 13 13 C 1.46900 * 110.99712 * 271.17510 * 12 2 1 14 14 H 1.08995 * 109.47142 * 39.13318 * 13 12 2 15 15 C 1.50699 * 109.46953 * 279.13095 * 13 12 2 16 16 C 1.33391 * 125.20438 * 139.72305 * 15 13 12 17 17 C 1.38424 * 114.92061 * 179.86244 * 16 15 13 18 18 C 1.33397 * 114.91885 * 0.42423 * 17 16 15 19 19 S 1.75882 * 109.59618 * 359.77514 * 18 17 16 20 20 C 1.53003 * 109.46929 * 159.13308 * 13 12 2 21 21 C 1.53003 * 109.46984 * 173.99172 * 20 13 12 22 22 C 1.52997 * 109.47160 * 53.98945 * 20 13 12 23 23 C 1.53002 * 109.47222 * 293.99000 * 20 13 12 24 24 H 1.09001 * 109.46974 * 304.66200 * 1 2 3 25 25 H 1.09003 * 109.47382 * 64.66316 * 1 2 3 26 26 H 1.09001 * 109.47471 * 184.66759 * 1 2 3 27 27 H 0.96998 * 119.99361 * 179.97438 * 7 6 4 28 28 H 1.00904 * 110.99657 * 35.12633 * 12 2 1 29 29 H 1.07995 * 122.53848 * 0.02562 * 16 15 13 30 30 H 1.07998 * 122.53839 * 180.20414 * 17 16 15 31 31 H 1.07999 * 125.19635 * 179.75070 * 18 17 16 32 32 H 1.09002 * 109.47122 * 59.99908 * 21 20 13 33 33 H 1.09000 * 109.46860 * 300.00321 * 21 20 13 34 34 H 1.08998 * 109.47181 * 180.02562 * 21 20 13 35 35 H 1.08998 * 109.47068 * 179.97438 * 22 20 13 36 36 H 1.08989 * 109.47263 * 299.99992 * 22 20 13 37 37 H 1.09005 * 109.47257 * 60.00167 * 22 20 13 38 38 H 1.09003 * 109.46891 * 305.32971 * 23 20 13 39 39 H 1.09001 * 109.46666 * 65.32595 * 23 20 13 40 40 H 1.08990 * 109.47210 * 185.33021 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.3447 -2.1618 -4.4122 10 1 2.4872 -0.1405 -5.1120 11 1 3.6308 -1.7568 -3.7119 12 7 2.0197 -0.6925 1.1995 13 6 2.1687 0.2422 2.3229 14 1 1.3406 0.9509 2.3182 15 6 3.4702 0.9893 2.1856 16 6 3.6431 2.2865 2.4437 17 6 4.9314 2.7535 2.2480 18 6 5.8027 1.8374 1.8224 19 16 4.9918 0.2859 1.6531 20 6 2.1649 -0.5379 3.6392 21 6 2.4693 0.4145 4.7973 22 6 3.2316 -1.6334 3.5859 23 6 0.7899 -1.1748 3.8506 24 1 -0.3633 0.5845 0.8453 25 1 -0.3634 0.4398 -0.9288 26 1 -0.3634 -1.0242 0.0836 27 1 0.7088 1.1611 -3.4844 28 1 1.4138 -1.4608 1.4461 29 1 2.8395 2.9236 2.7824 30 1 5.2092 3.7824 2.4230 31 1 6.8463 2.0206 1.6134 32 1 1.7092 1.1950 4.8353 33 1 3.4488 0.8683 4.6466 34 1 2.4670 -0.1412 5.7350 35 1 3.2292 -2.1887 4.5238 36 1 3.0148 -2.3118 2.7609 37 1 4.2112 -1.1796 3.4353 38 1 0.0203 -0.4049 3.7941 39 1 0.6132 -1.9226 3.0775 40 1 0.7567 -1.6505 4.8307 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390240884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:08 Heat of formation + Delta-G solvation = 21.138526 kcal Electronic energy + Delta-G solvation = -19294.552780 eV Core-core repulsion = 16621.518606 eV Total energy + Delta-G solvation = -2673.034173 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.88755 -36.57042 -34.80526 -32.07576 -29.84118 -28.04434 -26.99771 -26.63112 -25.12279 -24.38013 -22.41820 -20.12306 -18.91556 -18.51386 -16.50207 -16.05757 -15.13248 -15.00560 -14.72823 -14.10664 -13.83091 -13.31698 -12.88240 -12.67782 -12.26217 -12.20791 -12.04358 -12.00274 -11.64450 -11.60804 -11.50423 -11.27584 -10.95699 -10.83174 -10.70786 -10.39408 -10.33940 -10.28194 -10.08916 -10.02658 -9.76849 -8.96652 -8.30919 -8.03390 -7.74721 -7.28651 -5.93369 -3.95876 1.59799 2.29675 2.72721 3.27264 3.35058 3.41601 3.46341 4.47555 4.92388 5.02860 5.12404 5.34164 5.38424 5.49895 5.66150 5.75346 5.81753 5.92041 5.96191 5.98851 6.06348 6.08973 6.18607 6.19842 6.35853 6.41404 6.59720 6.62251 6.70259 6.73538 6.82242 6.86751 7.00097 7.12324 7.38913 7.77309 7.93067 8.31228 8.56057 8.62896 9.10754 9.68752 11.13494 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.007552 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.951416 B = 3706.919215 C = 4457.821793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.213 3.787 3 H 0.034 0.966 4 C -0.487 4.487 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.676 5.676 13 C 0.161 3.839 14 H 0.050 0.950 15 C -0.124 4.124 16 C -0.167 4.167 17 C -0.133 4.133 18 C -0.256 4.256 19 S 0.162 5.838 20 C -0.065 4.065 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.142 4.142 24 H 0.003 0.997 25 H 0.091 0.909 26 H 0.025 0.975 27 H 0.258 0.742 28 H 0.330 0.670 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.152 0.848 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 -0.290 13.188 13.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.106 3.894 3 H 0.052 0.948 4 C -0.526 4.526 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.308 5.308 13 C 0.048 3.952 14 H 0.068 0.932 15 C -0.243 4.243 16 C -0.197 4.197 17 C -0.164 4.164 18 C -0.392 4.392 19 S 0.427 5.573 20 C -0.066 4.066 21 C -0.196 4.196 22 C -0.199 4.199 23 C -0.200 4.200 24 H 0.022 0.978 25 H 0.109 0.891 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.170 0.830 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.327 -1.586 12.379 13.570 hybrid contribution -1.171 1.434 -0.398 1.894 sum 4.157 -0.152 11.981 12.683 Atomic orbital electron populations 1.22437 1.00774 0.98273 1.01335 1.19183 0.89407 0.94471 0.86368 0.94838 1.21119 1.29796 1.12200 0.89449 0.91982 1.24932 0.95477 0.95207 0.98946 1.69877 1.37511 1.23221 1.23172 0.86564 0.79272 0.79243 0.82722 1.20950 1.21480 1.19858 1.60893 1.55845 1.10563 1.03465 1.19952 0.90833 0.93410 0.90975 0.93184 1.24594 0.98876 0.96980 1.03829 1.19944 0.97610 0.94782 1.07357 1.19941 0.93012 0.99991 1.03500 1.25722 1.03581 0.98887 1.11024 1.84342 1.00009 1.09113 1.63854 1.20635 0.95917 0.95804 0.94268 1.21877 1.01941 0.98830 0.96997 1.21920 0.98669 0.98095 1.01168 1.21895 0.95948 1.00663 1.01443 0.97750 0.89055 0.95551 0.93197 0.85027 0.85479 0.85611 0.83042 0.93061 0.92149 0.93093 0.93662 0.91269 0.92082 0.92894 0.92164 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 9.02 37.16 0.34 -3.68 16 2 C 0.21 5.24 2.37 -68.86 -0.16 5.08 16 3 H 0.03 0.94 7.44 -51.93 -0.39 0.55 16 4 C -0.49 -13.30 8.84 -34.44 -0.30 -13.60 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.05 1.52 5.29 -17.82 -0.09 1.42 16 7 N -0.90 -25.84 11.29 55.43 0.63 -25.22 16 8 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.68 -13.61 4.92 -102.17 -0.50 -14.11 16 13 C 0.16 2.81 1.62 -68.86 -0.11 2.69 16 14 H 0.05 0.95 7.44 -51.93 -0.39 0.56 16 15 C -0.12 -2.19 3.30 -36.00 -0.12 -2.31 16 16 C -0.17 -2.78 9.25 -41.21 -0.38 -3.16 16 17 C -0.13 -2.06 10.18 -41.20 -0.42 -2.48 16 18 C -0.26 -3.99 11.23 29.04 0.33 -3.66 16 19 S 0.16 2.80 20.81 -107.50 -2.24 0.56 16 20 C -0.07 -0.92 0.57 -154.51 -0.09 -1.01 16 21 C -0.14 -1.75 8.01 37.16 0.30 -1.45 16 22 C -0.14 -1.96 7.89 37.16 0.29 -1.67 16 23 C -0.14 -1.83 8.20 37.16 0.30 -1.53 16 24 H 0.00 0.08 7.73 -51.93 -0.40 -0.32 16 25 H 0.09 2.44 5.96 -51.93 -0.31 2.13 16 26 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.33 6.31 5.95 -39.29 -0.23 6.07 16 29 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.15 1.97 8.06 -52.49 -0.42 1.54 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.81 6.60 -51.93 -0.34 0.47 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 1.04 7.22 -51.94 -0.38 0.66 16 37 H 0.06 0.89 5.56 -51.93 -0.29 0.60 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.81 6.66 -51.93 -0.35 0.46 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -28.32 323.24 -8.80 -37.12 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.41 Total: 5.46 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -0.12 Total: -25.37 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.12 Total: -39.33 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.24 Total: 0.56 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.32 -8.80 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390240884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.255 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds