Wall clock time and date at job start Mon Mar 30 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47492 * 2 1 4 4 C 1.50697 * 109.46909 * 239.99342 * 2 1 3 5 5 H 1.07999 * 120.00589 * 240.00045 * 4 2 1 6 6 C 1.37888 * 119.99748 * 60.00609 * 4 2 1 7 7 N 1.31509 * 119.99605 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99832 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47453 * 89.99522 * 8 6 4 10 10 H 1.48503 * 109.46921 * 209.99961 * 8 6 4 11 11 H 1.48504 * 109.47206 * 329.99277 * 8 6 4 12 12 N 1.46906 * 109.47258 * 119.99940 * 2 1 3 13 13 C 1.46900 * 110.99712 * 271.17510 * 12 2 1 14 14 H 1.08995 * 109.47142 * 39.13318 * 13 12 2 15 15 C 1.50699 * 109.46953 * 279.13095 * 13 12 2 16 16 C 1.33391 * 125.20438 * 139.72305 * 15 13 12 17 17 C 1.38424 * 114.92061 * 179.86244 * 16 15 13 18 18 C 1.33397 * 114.91885 * 0.42423 * 17 16 15 19 19 S 1.75882 * 109.59618 * 359.77514 * 18 17 16 20 20 C 1.53003 * 109.46929 * 159.13308 * 13 12 2 21 21 C 1.53003 * 109.46984 * 173.99172 * 20 13 12 22 22 C 1.52997 * 109.47160 * 53.98945 * 20 13 12 23 23 C 1.53002 * 109.47222 * 293.99000 * 20 13 12 24 24 H 1.09001 * 109.46974 * 304.66200 * 1 2 3 25 25 H 1.09003 * 109.47382 * 64.66316 * 1 2 3 26 26 H 1.09001 * 109.47471 * 184.66759 * 1 2 3 27 27 H 0.96998 * 119.99361 * 179.97438 * 7 6 4 28 28 H 1.00904 * 110.99657 * 35.12633 * 12 2 1 29 29 H 1.07995 * 122.53848 * 0.02562 * 16 15 13 30 30 H 1.07998 * 122.53839 * 180.20414 * 17 16 15 31 31 H 1.07999 * 125.19635 * 179.75070 * 18 17 16 32 32 H 1.09002 * 109.47122 * 59.99908 * 21 20 13 33 33 H 1.09000 * 109.46860 * 300.00321 * 21 20 13 34 34 H 1.08998 * 109.47181 * 180.02562 * 21 20 13 35 35 H 1.08998 * 109.47068 * 179.97438 * 22 20 13 36 36 H 1.08989 * 109.47263 * 299.99992 * 22 20 13 37 37 H 1.09005 * 109.47257 * 60.00167 * 22 20 13 38 38 H 1.09003 * 109.46891 * 305.32971 * 23 20 13 39 39 H 1.09001 * 109.46666 * 65.32595 * 23 20 13 40 40 H 1.08990 * 109.47210 * 185.33021 * 23 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.3447 -2.1618 -4.4122 10 1 2.4872 -0.1405 -5.1120 11 1 3.6308 -1.7568 -3.7119 12 7 2.0197 -0.6925 1.1995 13 6 2.1687 0.2422 2.3229 14 1 1.3406 0.9509 2.3182 15 6 3.4702 0.9893 2.1856 16 6 3.6431 2.2865 2.4437 17 6 4.9314 2.7535 2.2480 18 6 5.8027 1.8374 1.8224 19 16 4.9918 0.2859 1.6531 20 6 2.1649 -0.5379 3.6392 21 6 2.4693 0.4145 4.7973 22 6 3.2316 -1.6334 3.5859 23 6 0.7899 -1.1748 3.8506 24 1 -0.3633 0.5845 0.8453 25 1 -0.3634 0.4398 -0.9288 26 1 -0.3634 -1.0242 0.0836 27 1 0.7088 1.1611 -3.4844 28 1 1.4138 -1.4608 1.4461 29 1 2.8395 2.9236 2.7824 30 1 5.2092 3.7824 2.4230 31 1 6.8463 2.0206 1.6134 32 1 1.7092 1.1950 4.8353 33 1 3.4488 0.8683 4.6466 34 1 2.4670 -0.1412 5.7350 35 1 3.2292 -2.1887 4.5238 36 1 3.0148 -2.3118 2.7609 37 1 4.2112 -1.1796 3.4353 38 1 0.0203 -0.4049 3.7941 39 1 0.6132 -1.9226 3.0775 40 1 0.7567 -1.6505 4.8307 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390240884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:07 Heat of formation + Delta-G solvation = 6.224063 kcal Electronic energy + Delta-G solvation = -19295.199519 eV Core-core repulsion = 16621.518606 eV Total energy + Delta-G solvation = -2673.680913 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21004 -37.86136 -36.52784 -33.97148 -31.28744 -29.63063 -28.08974 -27.74706 -27.19163 -25.82417 -23.76315 -22.00830 -20.14996 -19.78625 -18.36053 -17.49359 -16.80784 -16.50790 -16.24487 -15.61397 -15.02843 -14.65069 -14.54570 -14.19037 -13.66026 -13.61259 -13.44169 -13.29124 -13.06866 -12.87059 -12.82031 -12.76579 -12.63689 -12.50927 -12.33129 -12.14544 -11.99676 -11.53371 -11.51883 -11.38545 -11.34168 -10.96084 -10.43989 -9.33146 -9.10360 -8.94764 -8.05605 -6.15059 0.30889 0.99565 1.41906 1.42907 1.43391 1.53625 2.00382 2.45672 3.23026 3.55611 3.85408 3.96466 4.10487 4.33337 4.40787 4.56470 4.69329 4.74469 4.78241 4.81508 4.86019 4.89178 4.91399 4.98182 5.09057 5.12520 5.16695 5.24839 5.32288 5.34432 5.46540 5.52158 5.57838 5.62602 5.72008 5.75213 5.89181 6.32975 6.68642 6.86821 6.99564 7.54049 8.99605 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.007552 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.951416 B = 3706.919215 C = 4457.821793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.226 3.774 3 H -0.005 1.005 4 C -0.500 4.500 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.673 5.673 13 C 0.163 3.837 14 H 0.033 0.967 15 C -0.142 4.142 16 C -0.172 4.172 17 C -0.139 4.139 18 C -0.250 4.250 19 S 0.125 5.875 20 C -0.061 4.061 21 C -0.133 4.133 22 C -0.138 4.138 23 C -0.140 4.140 24 H 0.020 0.980 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.258 0.742 28 H 0.336 0.664 29 H 0.136 0.864 30 H 0.154 0.846 31 H 0.179 0.821 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.840 -0.584 14.314 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.117 3.883 3 H 0.013 0.987 4 C -0.538 4.538 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.304 5.304 13 C 0.051 3.949 14 H 0.051 0.949 15 C -0.261 4.261 16 C -0.202 4.202 17 C -0.170 4.170 18 C -0.385 4.385 19 S 0.390 5.610 20 C -0.061 4.061 21 C -0.190 4.190 22 C -0.195 4.195 23 C -0.197 4.197 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.156 0.844 29 H 0.154 0.846 30 H 0.172 0.828 31 H 0.196 0.804 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.905 -1.890 13.524 14.878 hybrid contribution -1.326 1.577 -0.702 2.177 sum 4.579 -0.313 12.822 13.619 Atomic orbital electron populations 1.22253 1.00240 0.98734 1.00426 1.18826 0.89586 0.92346 0.87548 0.98685 1.21397 1.29612 1.12018 0.90818 0.92778 1.25654 0.95724 0.95890 1.01693 1.70010 1.38421 1.24371 1.23639 0.85636 0.78865 0.78267 0.79338 1.20135 1.21358 1.19560 1.60727 1.55431 1.10938 1.03335 1.20000 0.90329 0.92912 0.91674 0.94883 1.24649 0.98925 0.97548 1.04990 1.20230 0.98618 0.94566 1.06818 1.20248 0.92356 1.01366 1.03007 1.26033 1.04797 0.97485 1.10222 1.84389 1.00735 1.11093 1.64790 1.20627 0.96825 0.95835 0.92855 1.21817 1.01410 0.98697 0.97104 1.21880 0.98095 0.97800 1.01741 1.21884 0.94922 1.00384 1.02536 0.96111 0.91976 0.94682 0.93291 0.84363 0.84636 0.82838 0.80399 0.92870 0.93076 0.90957 0.91349 0.92806 0.92859 0.93184 0.92961 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.55 9.02 71.98 0.65 -6.90 16 2 C 0.23 11.30 2.37 44.17 0.10 11.41 16 3 H 0.00 -0.28 7.44 -2.39 -0.02 -0.29 16 4 C -0.50 -27.67 8.84 25.60 0.23 -27.44 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.44 5.29 84.66 0.45 0.89 16 7 N -0.92 -54.00 11.29 21.45 0.24 -53.76 16 8 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 N -0.67 -27.32 4.92 -477.16 -2.35 -29.67 16 13 C 0.16 5.68 1.62 44.17 0.07 5.75 16 14 H 0.03 1.27 7.44 -2.39 -0.02 1.25 16 15 C -0.14 -5.03 3.30 24.59 0.08 -4.95 16 16 C -0.17 -5.62 9.25 21.22 0.20 -5.42 16 17 C -0.14 -4.08 10.18 21.22 0.22 -3.86 16 18 C -0.25 -7.39 11.23 66.72 0.75 -6.64 16 19 S 0.13 4.32 20.81 -56.49 -1.18 3.15 16 20 C -0.06 -1.63 0.57 -52.18 -0.03 -1.66 16 21 C -0.13 -3.08 8.01 71.98 0.58 -2.51 16 22 C -0.14 -3.65 7.89 71.98 0.57 -3.08 16 23 C -0.14 -3.35 8.20 71.98 0.59 -2.76 16 24 H 0.02 0.88 7.73 -2.39 -0.02 0.86 16 25 H 0.06 3.38 5.96 -2.39 -0.01 3.36 16 26 H 0.03 1.57 8.04 -2.39 -0.02 1.55 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.34 12.84 5.95 -89.69 -0.53 12.30 16 29 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.18 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.29 6.60 -2.39 -0.02 1.27 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.05 1.58 7.22 -2.39 -0.02 1.56 16 37 H 0.05 1.50 5.56 -2.38 -0.01 1.49 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.05 1.33 6.66 -2.39 -0.02 1.31 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -60.81 323.24 3.67 -57.14 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.48 Total: 23.58 kcal Atomic # 6 Polarization: -51.62 SS G_CDS: 4.45 Total: -47.17 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -2.10 Total: -83.43 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.18 Total: 3.15 kcal Total: -60.81 3.67 -57.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390240884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.363 kcal (2) G-P(sol) polarization free energy of solvation -60.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds