Wall clock time and date at job start Mon Mar 30 2020 06:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46923 * 2 1 4 4 C 1.52999 * 109.47486 * 239.99951 * 2 1 3 5 5 C 1.50698 * 109.47005 * 64.99504 * 4 2 1 6 6 H 1.07998 * 120.00026 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99700 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99542 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00195 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46808 * 89.99963 * 9 7 5 11 11 H 1.48500 * 109.47181 * 209.99691 * 9 7 5 12 12 H 1.48494 * 109.47247 * 330.00007 * 9 7 5 13 13 C 1.50703 * 109.46802 * 119.99689 * 2 1 3 14 14 N 1.31130 * 126.54977 * 240.00012 * 13 2 1 15 15 C 1.34493 * 105.61518 * 179.97438 * 14 13 2 16 16 C 1.50707 * 126.28678 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47196 * 59.99568 * 16 15 14 18 18 C 1.52995 * 109.46654 * 299.99500 * 16 15 14 19 19 N 1.46902 * 109.46656 * 179.97438 * 16 15 14 20 20 C 1.46906 * 110.99573 * 179.97438 * 19 16 15 21 21 C 1.46898 * 111.00283 * 303.94797 * 19 16 15 22 22 N 1.29941 * 107.42482 * 0.24101 * 15 14 13 23 23 O 1.21300 * 110.24898 * 359.57861 * 22 15 14 24 24 H 1.08996 * 109.47184 * 60.00559 * 1 2 3 25 25 H 1.09000 * 109.46923 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47408 * 300.00091 * 1 2 3 27 27 H 1.08991 * 109.47105 * 185.00032 * 4 2 1 28 28 H 1.09001 * 109.46804 * 304.99558 * 4 2 1 29 29 H 0.96999 * 119.99737 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46566 * 179.97438 * 17 16 15 31 31 H 1.08995 * 109.47573 * 299.99732 * 17 16 15 32 32 H 1.09004 * 109.47253 * 60.00360 * 17 16 15 33 33 H 1.09003 * 109.47841 * 299.99908 * 18 16 15 34 34 H 1.09000 * 109.47719 * 60.00633 * 18 16 15 35 35 H 1.09001 * 109.46892 * 180.02562 * 18 16 15 36 36 H 1.08999 * 109.46692 * 180.02562 * 20 19 16 37 37 H 1.09002 * 109.46991 * 299.99841 * 20 19 16 38 38 H 1.09000 * 109.47202 * 60.00133 * 20 19 16 39 39 H 1.08997 * 109.47334 * 296.05250 * 21 19 16 40 40 H 1.09000 * 109.46674 * 56.05127 * 21 19 16 41 41 H 1.08995 * 109.47296 * 176.04950 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0806 0.9744 -2.3756 7 6 1.9934 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7992 9 14 2.9639 -1.9883 -3.9026 10 1 2.0247 -3.1327 -4.0199 11 1 3.8129 -1.9181 -5.1190 12 1 3.8255 -2.1755 -2.7077 13 6 2.0323 -0.7104 1.2305 14 7 2.7892 -0.2006 2.1723 15 6 2.9808 -1.1930 3.0595 16 6 3.7880 -1.1104 4.3295 17 6 3.1977 -0.0317 5.2398 18 6 5.2369 -0.7549 3.9905 19 7 3.7499 -2.4070 5.0190 20 6 4.5284 -2.3642 6.2641 21 6 2.3656 -2.8255 5.2774 22 7 2.3469 -2.2377 2.6178 23 8 1.7910 -1.9799 1.5709 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.1264 -0.7994 -1.2055 28 1 1.6056 -1.7198 -1.2950 29 1 1.8931 -0.0453 -5.6798 30 1 3.7813 0.0276 6.1585 31 1 3.2256 0.9305 4.7284 32 1 2.1653 -0.2850 5.4813 33 1 5.6576 -1.5234 3.3420 34 1 5.2649 0.2073 3.4791 35 1 5.8209 -0.6956 4.9090 36 1 4.4837 -3.3368 6.7541 37 1 5.5659 -2.1202 6.0356 38 1 4.1136 -1.6040 6.9260 39 1 1.8938 -2.1188 5.9600 40 1 1.8120 -2.8488 4.3387 41 1 2.3640 -3.8193 5.7249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395462347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:53 Heat of formation + Delta-G solvation = 74.046112 kcal Electronic energy + Delta-G solvation = -21140.074603 eV Core-core repulsion = 18058.874555 eV Total energy + Delta-G solvation = -3081.200048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.22853 -39.21036 -36.02360 -35.05721 -32.56929 -31.99598 -30.99993 -28.25743 -27.73252 -27.11944 -24.92037 -24.55141 -23.48339 -22.41552 -20.53273 -18.82895 -17.67763 -17.17333 -16.70131 -16.22457 -15.22295 -14.89951 -14.65647 -14.25399 -14.01256 -13.73197 -13.63353 -12.91194 -12.73784 -12.50892 -12.30247 -12.17835 -12.07390 -11.80348 -11.61968 -11.51096 -11.45525 -11.39161 -11.22406 -11.05051 -10.92217 -10.58329 -10.20727 -10.15419 -9.88955 -9.34387 -9.26749 -8.61365 -8.52702 -6.12199 -4.12148 1.53522 2.53694 3.27217 3.28777 3.36539 3.40796 3.44716 3.78863 4.39611 4.45516 4.67619 4.75836 4.99667 5.08872 5.21196 5.24422 5.32664 5.37863 5.42561 5.50627 5.59101 5.63008 5.66137 5.68771 5.72205 5.84779 5.94313 6.05114 6.10198 6.17769 6.27098 6.46258 6.51184 6.78576 6.80634 6.85063 7.02393 7.16272 7.63166 8.39981 8.54664 8.89717 9.48886 11.00202 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.031423 B = 0.004523 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.860567 B = 6189.626353 C = 6400.329371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.009 3.991 3 H 0.111 0.889 4 C -0.008 4.008 5 C -0.521 4.521 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.213 3.787 14 N -0.493 5.493 15 C 0.174 3.826 16 C 0.203 3.797 17 C -0.176 4.176 18 C -0.136 4.136 19 N -0.531 5.531 20 C 0.020 3.980 21 C 0.006 3.994 22 N -0.378 5.378 23 O 0.068 5.932 24 H 0.090 0.910 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.022 0.978 28 H 0.024 0.976 29 H 0.265 0.735 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.024 0.976 40 H 0.093 0.907 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -2.781 20.378 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.011 4.011 3 H 0.129 0.871 4 C -0.046 4.046 5 C -0.558 4.558 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.701 3.299 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.006 4.006 14 N -0.226 5.226 15 C -0.100 4.100 16 C 0.111 3.889 17 C -0.235 4.235 18 C -0.194 4.194 19 N -0.254 5.254 20 C -0.128 4.128 21 C -0.141 4.141 22 N -0.088 5.088 23 O 0.013 5.987 24 H 0.108 0.892 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.042 0.958 40 H 0.112 0.888 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.473 -3.596 20.485 21.086 hybrid contribution 0.117 -0.298 0.171 0.363 sum 3.590 -3.895 20.656 21.324 Atomic orbital electron populations 1.21797 0.92654 1.02579 1.02424 1.20112 0.96779 0.98837 0.85368 0.87091 1.19714 0.96681 0.96379 0.91809 1.20919 1.36475 1.09914 0.88535 0.90211 1.24932 0.95288 0.96865 0.95815 1.69888 1.46447 1.39099 0.98122 0.86866 0.80807 0.84306 0.77917 1.20003 1.21216 1.19087 1.29595 0.91669 0.81852 0.97489 1.71834 1.18094 1.29438 1.03233 1.25328 0.99941 0.85663 0.99031 1.19137 0.94215 0.89066 0.86458 1.22421 1.01219 0.99950 0.99925 1.21875 0.92518 1.02781 1.02255 1.62078 1.13643 1.26532 1.23192 1.22508 0.98625 1.01486 0.90194 1.22779 0.88784 0.99791 1.02792 1.74564 1.13120 1.23242 0.97876 1.85301 1.54212 1.30039 1.29119 0.89164 0.92383 0.93889 0.96005 0.95799 0.92529 0.91143 0.90455 0.92305 0.91550 0.90724 0.91359 0.91114 0.90821 0.95038 0.95754 0.88847 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.99 37.16 0.33 -1.95 16 2 C 0.01 0.18 2.81 -91.77 -0.26 -0.08 16 3 H 0.11 2.07 8.14 -51.93 -0.42 1.64 16 4 C -0.01 -0.17 3.50 -27.88 -0.10 -0.27 16 5 C -0.52 -13.74 8.96 -34.44 -0.31 -14.05 16 6 H 0.08 2.20 7.30 -52.49 -0.38 1.82 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.50 13.96 55.43 0.77 -25.73 16 9 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.21 3.93 7.02 -13.06 -0.09 3.84 16 14 N -0.49 -8.84 11.55 -9.87 -0.11 -8.95 16 15 C 0.17 2.90 6.03 -156.37 -0.94 1.96 16 16 C 0.20 2.66 0.68 -132.75 -0.09 2.57 16 17 C -0.18 -1.96 7.77 37.15 0.29 -1.67 16 18 C -0.14 -1.61 8.22 37.15 0.31 -1.30 16 19 N -0.53 -6.59 4.76 -236.76 -1.13 -7.71 16 20 C 0.02 0.18 8.82 60.07 0.53 0.71 16 21 C 0.01 0.08 8.80 60.06 0.53 0.61 16 22 N -0.38 -6.76 9.07 30.89 0.28 -6.47 16 23 O 0.07 1.28 11.31 18.12 0.20 1.48 16 24 H 0.09 1.60 6.95 -51.93 -0.36 1.24 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 28 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.07 0.63 6.40 -51.93 -0.33 0.30 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.68 6.58 -51.93 -0.34 0.34 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.62 6.40 -51.93 -0.33 0.29 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.60 6.30 -51.93 -0.33 0.27 16 38 H 0.03 0.25 6.30 -51.93 -0.33 -0.07 16 39 H 0.02 0.27 6.60 -51.93 -0.34 -0.08 16 40 H 0.09 1.36 4.91 -51.93 -0.26 1.11 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 321.88 15.07 4.85 4.85 Total: -1.00 -29.57 321.88 -6.02 -35.58 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.32 Total: -1.87 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 0.10 Total: -7.70 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.19 Total: -48.87 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.20 Total: 1.48 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.57 -6.02 -35.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395462347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.630 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds