Wall clock time and date at job start Mon Mar 30 2020 06:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46923 * 2 1 4 4 C 1.52999 * 109.47486 * 239.99951 * 2 1 3 5 5 C 1.50698 * 109.47005 * 64.99504 * 4 2 1 6 6 H 1.07998 * 120.00026 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99700 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99542 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00195 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46808 * 89.99963 * 9 7 5 11 11 H 1.48500 * 109.47181 * 209.99691 * 9 7 5 12 12 H 1.48494 * 109.47247 * 330.00007 * 9 7 5 13 13 C 1.50703 * 109.46802 * 119.99689 * 2 1 3 14 14 N 1.31130 * 126.54977 * 240.00012 * 13 2 1 15 15 C 1.34493 * 105.61518 * 179.97438 * 14 13 2 16 16 C 1.50707 * 126.28678 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47196 * 59.99568 * 16 15 14 18 18 C 1.52995 * 109.46654 * 299.99500 * 16 15 14 19 19 N 1.46902 * 109.46656 * 179.97438 * 16 15 14 20 20 C 1.46906 * 110.99573 * 179.97438 * 19 16 15 21 21 C 1.46898 * 111.00283 * 303.94797 * 19 16 15 22 22 N 1.29941 * 107.42482 * 0.24101 * 15 14 13 23 23 O 1.21300 * 110.24898 * 359.57861 * 22 15 14 24 24 H 1.08996 * 109.47184 * 60.00559 * 1 2 3 25 25 H 1.09000 * 109.46923 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47408 * 300.00091 * 1 2 3 27 27 H 1.08991 * 109.47105 * 185.00032 * 4 2 1 28 28 H 1.09001 * 109.46804 * 304.99558 * 4 2 1 29 29 H 0.96999 * 119.99737 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46566 * 179.97438 * 17 16 15 31 31 H 1.08995 * 109.47573 * 299.99732 * 17 16 15 32 32 H 1.09004 * 109.47253 * 60.00360 * 17 16 15 33 33 H 1.09003 * 109.47841 * 299.99908 * 18 16 15 34 34 H 1.09000 * 109.47719 * 60.00633 * 18 16 15 35 35 H 1.09001 * 109.46892 * 180.02562 * 18 16 15 36 36 H 1.08999 * 109.46692 * 180.02562 * 20 19 16 37 37 H 1.09002 * 109.46991 * 299.99841 * 20 19 16 38 38 H 1.09000 * 109.47202 * 60.00133 * 20 19 16 39 39 H 1.08997 * 109.47334 * 296.05250 * 21 19 16 40 40 H 1.09000 * 109.46674 * 56.05127 * 21 19 16 41 41 H 1.08995 * 109.47296 * 176.04950 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0806 0.9744 -2.3756 7 6 1.9934 -0.4018 -3.7282 8 7 1.6458 0.2777 -4.7992 9 14 2.9639 -1.9883 -3.9026 10 1 2.0247 -3.1327 -4.0199 11 1 3.8129 -1.9181 -5.1190 12 1 3.8255 -2.1755 -2.7077 13 6 2.0323 -0.7104 1.2305 14 7 2.7892 -0.2006 2.1723 15 6 2.9808 -1.1930 3.0595 16 6 3.7880 -1.1104 4.3295 17 6 3.1977 -0.0317 5.2398 18 6 5.2369 -0.7549 3.9905 19 7 3.7499 -2.4070 5.0190 20 6 4.5284 -2.3642 6.2641 21 6 2.3656 -2.8255 5.2774 22 7 2.3469 -2.2377 2.6178 23 8 1.7910 -1.9799 1.5709 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 3.1264 -0.7994 -1.2055 28 1 1.6056 -1.7198 -1.2950 29 1 1.8931 -0.0453 -5.6798 30 1 3.7813 0.0276 6.1585 31 1 3.2256 0.9305 4.7284 32 1 2.1653 -0.2850 5.4813 33 1 5.6576 -1.5234 3.3420 34 1 5.2649 0.2073 3.4791 35 1 5.8209 -0.6956 4.9090 36 1 4.4837 -3.3368 6.7541 37 1 5.5659 -2.1202 6.0356 38 1 4.1136 -1.6040 6.9260 39 1 1.8938 -2.1188 5.9600 40 1 1.8120 -2.8488 4.3387 41 1 2.3640 -3.8193 5.7249 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395462347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:52 Heat of formation + Delta-G solvation = 53.391685 kcal Electronic energy + Delta-G solvation = -21140.970246 eV Core-core repulsion = 18058.874555 eV Total energy + Delta-G solvation = -3082.095691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.59913 -40.15908 -37.60080 -36.42271 -34.49807 -33.02523 -32.45568 -29.56960 -29.07672 -27.98787 -26.15927 -25.92075 -24.60176 -24.07952 -21.96895 -20.03518 -19.16424 -19.00634 -18.08594 -17.26428 -16.51978 -16.16822 -15.91330 -15.69110 -15.36426 -14.96970 -14.72160 -14.56777 -14.00459 -13.81745 -13.41862 -13.22799 -13.16261 -13.03859 -12.96775 -12.84628 -12.66190 -12.53462 -12.49907 -12.32531 -12.21160 -11.98125 -11.87179 -11.76645 -11.68659 -11.33777 -10.75023 -10.72135 -9.38110 -8.26757 -6.29755 0.13126 1.19755 1.36224 1.39267 1.48180 1.84757 2.36225 2.36647 2.73545 3.08661 3.20125 3.66661 3.83792 4.03807 4.14529 4.20177 4.22339 4.28729 4.39539 4.53697 4.58823 4.62255 4.66317 4.68955 4.76443 4.82349 4.85956 4.93246 4.95151 5.01879 5.11896 5.12292 5.18679 5.20399 5.31388 5.46166 5.61161 5.88173 6.02461 6.27070 6.76674 7.16550 7.34105 8.88618 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.031423 B = 0.004523 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.860567 B = 6189.626353 C = 6400.329371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.017 3.983 3 H 0.111 0.889 4 C -0.003 4.003 5 C -0.516 4.516 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.942 5.942 9 Si 0.931 3.069 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.259 1.259 13 C 0.208 3.792 14 N -0.498 5.498 15 C 0.176 3.824 16 C 0.197 3.803 17 C -0.169 4.169 18 C -0.132 4.132 19 N -0.547 5.547 20 C 0.018 3.982 21 C 0.009 3.991 22 N -0.387 5.387 23 O 0.056 5.944 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.014 0.986 28 H 0.028 0.972 29 H 0.266 0.734 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.067 0.933 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 -3.555 22.848 23.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.003 4.003 3 H 0.129 0.871 4 C -0.042 4.042 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.583 5.583 9 Si 0.756 3.244 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.184 1.184 13 C -0.012 4.012 14 N -0.232 5.232 15 C -0.097 4.097 16 C 0.105 3.895 17 C -0.228 4.228 18 C -0.190 4.190 19 N -0.272 5.272 20 C -0.129 4.129 21 C -0.139 4.139 22 N -0.099 5.099 23 O 0.004 5.996 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.411 -4.378 22.964 23.790 hybrid contribution -0.181 -0.021 -0.509 0.540 sum 4.230 -4.399 22.455 23.270 Atomic orbital electron populations 1.21733 0.91097 1.03069 1.02929 1.19889 0.98049 0.98268 0.84110 0.87114 1.19587 0.96151 0.96372 0.92063 1.21188 1.35081 1.09216 0.89954 0.92489 1.25715 0.96564 1.00043 0.95690 1.70011 1.48424 1.41104 0.98717 0.85940 0.79684 0.80753 0.78008 1.19014 1.20988 1.18353 1.29373 0.92119 0.82070 0.97602 1.71839 1.17881 1.29993 1.03499 1.26086 0.99213 0.84729 0.99712 1.19404 0.94339 0.90335 0.85407 1.22375 1.01252 0.98668 1.00492 1.21869 0.92041 1.01698 1.03438 1.62079 1.13931 1.26116 1.25065 1.22611 0.98628 1.02657 0.88955 1.22705 0.88747 1.00857 1.01597 1.74628 1.13746 1.23779 0.97746 1.85292 1.54708 1.30001 1.29644 0.90610 0.91908 0.91374 0.96810 0.95411 0.92443 0.88380 0.91148 0.92876 0.93192 0.91393 0.88203 0.90114 0.89832 0.93656 0.94734 0.91504 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 8.99 71.98 0.65 -3.62 16 2 C 0.02 0.64 2.81 -11.54 -0.03 0.61 16 3 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 4 C 0.00 -0.15 3.50 29.85 0.10 -0.05 16 5 C -0.52 -27.59 8.96 25.60 0.23 -27.36 16 6 H 0.06 3.24 7.30 -2.91 -0.02 3.22 16 7 C 0.02 1.00 5.47 84.65 0.46 1.46 16 8 N -0.94 -56.67 13.96 21.45 0.30 -56.37 16 9 Si 0.93 43.59 27.47 68.60 1.88 45.47 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.26 -11.74 6.54 99.48 0.65 -11.09 16 13 C 0.21 7.52 7.02 88.38 0.62 8.14 16 14 N -0.50 -17.42 11.55 -303.23 -3.50 -20.92 16 15 C 0.18 5.68 6.03 138.47 0.83 6.51 16 16 C 0.20 4.75 0.68 2.78 0.00 4.75 16 17 C -0.17 -3.30 7.77 71.98 0.56 -2.74 16 18 C -0.13 -2.83 8.22 71.98 0.59 -2.24 16 19 N -0.55 -12.25 4.76 -902.97 -4.29 -16.55 16 20 C 0.02 0.27 8.82 127.69 1.13 1.39 16 21 C 0.01 0.20 8.80 127.69 1.12 1.32 16 22 N -0.39 -13.54 9.07 -60.35 -0.55 -14.09 16 23 O 0.06 2.05 11.31 74.90 0.85 2.90 16 24 H 0.07 2.70 6.95 -2.39 -0.02 2.69 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.01 0.63 7.20 -2.39 -0.02 0.62 16 28 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.10 1.36 6.40 -2.39 -0.02 1.35 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.10 6.58 -2.38 -0.02 1.08 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 1.47 6.40 -2.39 -0.02 1.45 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.04 6.30 -2.39 -0.02 1.02 16 38 H 0.04 0.54 6.30 -2.39 -0.02 0.52 16 39 H 0.03 0.68 6.60 -2.39 -0.02 0.67 16 40 H 0.07 1.88 4.91 -2.39 -0.01 1.87 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -63.40 321.88 1.92 -61.48 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.96 Total: 9.90 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 6.27 Total: -11.82 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -8.04 Total: -107.93 kcal Atomic # 8 Polarization: 2.05 SS G_CDS: 0.85 Total: 2.90 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -63.40 1.92 -61.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395462347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.876 kcal (2) G-P(sol) polarization free energy of solvation -63.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds