Wall clock time and date at job start Mon Mar 30 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47132 * 2 1 4 4 C 1.53002 * 109.47335 * 120.00117 * 2 1 3 5 5 C 1.50699 * 109.47145 * 294.99939 * 4 2 1 6 6 H 1.08000 * 119.99973 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00106 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00173 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99947 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46743 * 90.00236 * 9 7 5 11 11 H 1.48495 * 109.47051 * 210.00082 * 9 7 5 12 12 H 1.48500 * 109.46849 * 330.00405 * 9 7 5 13 13 C 1.50704 * 109.46745 * 240.00180 * 2 1 3 14 14 N 1.31130 * 126.54858 * 120.00297 * 13 2 1 15 15 C 1.34496 * 105.61281 * 180.02562 * 14 13 2 16 16 C 1.50699 * 126.28732 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47078 * 60.00083 * 16 15 14 18 18 C 1.52992 * 109.46956 * 299.99770 * 16 15 14 19 19 N 1.46906 * 109.46750 * 180.02562 * 16 15 14 20 20 C 1.46898 * 110.99498 * 180.02562 * 19 16 15 21 21 C 1.46897 * 110.99868 * 303.94903 * 19 16 15 22 22 N 1.29955 * 107.42496 * 0.23934 * 15 14 13 23 23 O 1.21304 * 110.24800 * 359.57791 * 22 15 14 24 24 H 1.09008 * 109.46558 * 299.99884 * 1 2 3 25 25 H 1.08999 * 109.47404 * 59.99299 * 1 2 3 26 26 H 1.09001 * 109.47346 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46983 * 54.99451 * 4 2 1 28 28 H 1.08998 * 109.46968 * 174.99770 * 4 2 1 29 29 H 0.96998 * 120.00099 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47153 * 299.99793 * 17 16 15 31 31 H 1.09001 * 109.46832 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.47261 * 59.99965 * 17 16 15 33 33 H 1.09001 * 109.47066 * 180.02562 * 18 16 15 34 34 H 1.08996 * 109.47747 * 299.99900 * 18 16 15 35 35 H 1.09002 * 109.47103 * 60.00312 * 18 16 15 36 36 H 1.08997 * 109.47334 * 60.00216 * 20 19 16 37 37 H 1.09000 * 109.47199 * 180.02562 * 20 19 16 38 38 H 1.08995 * 109.47296 * 299.99915 * 20 19 16 39 39 H 1.09004 * 109.47141 * 60.00723 * 21 19 16 40 40 H 1.09001 * 109.46689 * 180.02562 * 21 19 16 41 41 H 1.08990 * 109.47599 * 300.00086 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0570 2.4766 6 1 1.0801 0.9741 2.3758 7 6 1.9934 -0.4017 3.7282 8 7 1.6451 0.2772 4.7994 9 14 2.9638 -1.9884 3.9027 10 1 4.4172 -1.6849 3.8779 11 1 2.6166 -2.6420 5.1901 12 1 2.6291 -2.8995 2.7788 13 6 2.0323 -0.7104 -1.2305 14 7 2.7892 -0.2007 -2.1722 15 6 2.9808 -1.1931 -3.0595 16 6 3.7870 -1.1103 -4.3300 17 6 5.2360 -0.7538 -3.9921 18 6 3.1954 -0.0321 -5.2400 19 7 3.7492 -2.4071 -5.0193 20 6 4.5268 -2.3640 -6.2648 21 6 4.2231 -3.4845 -4.1403 22 7 2.3382 -2.2349 -2.6229 23 8 1.7910 -1.9801 -1.5707 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.6054 -1.7198 1.2952 28 1 3.1264 -0.7995 1.2055 29 1 1.8930 -0.0454 5.6799 30 1 5.2637 0.2084 -3.4809 31 1 5.8193 -0.6944 -4.9110 32 1 5.6575 -1.5220 -3.3437 33 1 3.7783 0.0274 -6.1592 34 1 2.1632 -0.2861 -5.4808 35 1 3.2231 0.9301 -4.7288 36 1 5.5643 -2.1194 -6.0371 37 1 4.4817 -3.3364 -6.7551 38 1 4.1112 -1.6042 -6.9265 39 1 3.5864 -3.5394 -3.2572 40 1 4.1850 -4.4332 -4.6756 41 1 5.2495 -3.2803 -3.8361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395462350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:55 Heat of formation + Delta-G solvation = 73.747604 kcal Electronic energy + Delta-G solvation = -21158.006003 eV Core-core repulsion = 18076.793010 eV Total energy + Delta-G solvation = -3081.212993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.22106 -39.20529 -36.02233 -35.05554 -32.57435 -31.99427 -30.99243 -28.24998 -27.74263 -27.10528 -24.91972 -24.55037 -23.47530 -22.41853 -20.52565 -18.83489 -17.65851 -17.18255 -16.70506 -16.21903 -15.22317 -14.88565 -14.63889 -14.21934 -14.08593 -13.71741 -13.64912 -12.83300 -12.78161 -12.49822 -12.28130 -12.23138 -12.08000 -11.81670 -11.59876 -11.54500 -11.42558 -11.41070 -11.16638 -11.03926 -10.92627 -10.52979 -10.30498 -10.15604 -9.87585 -9.33816 -9.28501 -8.62501 -8.52388 -6.13080 -4.13014 1.53806 2.53990 3.26598 3.27704 3.34909 3.38567 3.45024 3.79524 4.38224 4.45583 4.68030 4.76796 4.99357 5.10437 5.20222 5.26053 5.34475 5.38972 5.42576 5.50385 5.59850 5.62339 5.66368 5.67565 5.72861 5.86682 5.95812 6.06403 6.09690 6.18561 6.27753 6.47109 6.51833 6.78567 6.81513 6.85326 6.98842 7.16680 7.62195 8.39227 8.54886 8.89016 9.47891 10.99348 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.029882 B = 0.004664 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.795356 B = 6001.963922 C = 6368.678236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.009 3.991 3 H 0.111 0.889 4 C -0.007 4.007 5 C -0.520 4.520 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.213 3.787 14 N -0.493 5.493 15 C 0.174 3.826 16 C 0.202 3.798 17 C -0.177 4.177 18 C -0.134 4.134 19 N -0.530 5.530 20 C 0.019 3.981 21 C 0.005 3.995 22 N -0.378 5.378 23 O 0.069 5.931 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.016 0.984 29 H 0.265 0.735 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 -3.386 -19.410 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.011 4.011 3 H 0.129 0.871 4 C -0.046 4.046 5 C -0.558 4.558 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.700 3.300 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.189 1.189 13 C -0.006 4.006 14 N -0.226 5.226 15 C -0.100 4.100 16 C 0.111 3.889 17 C -0.237 4.237 18 C -0.193 4.193 19 N -0.254 5.254 20 C -0.129 4.129 21 C -0.143 4.143 22 N -0.088 5.088 23 O 0.013 5.987 24 H 0.108 0.892 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.314 -3.947 -19.962 20.801 hybrid contribution 1.427 -0.725 0.613 1.714 sum 5.741 -4.672 -19.349 20.716 Atomic orbital electron populations 1.21795 0.92587 1.02611 1.02451 1.20109 0.96849 0.98802 0.85344 0.87118 1.19715 0.96263 0.96742 0.91853 1.20923 1.36505 1.09867 0.88530 0.90187 1.24931 0.95348 0.96791 0.95823 1.69884 1.46409 1.39108 0.98130 0.86883 0.80750 0.84486 0.77888 1.20266 1.21142 1.18860 1.29594 0.91696 0.81850 0.97480 1.71837 1.18237 1.29311 1.03220 1.25326 0.99957 0.85934 0.98739 1.19133 0.92276 0.90916 0.86588 1.22432 0.95302 1.03541 1.02384 1.21861 1.01558 0.97311 0.98545 1.62122 1.54705 1.02878 1.05677 1.22510 0.95686 1.02883 0.91790 1.22798 0.98866 0.93870 0.98777 1.74576 1.12711 1.23531 0.98003 1.85307 1.54538 1.30081 1.28730 0.89178 0.93810 0.92370 0.95355 0.96532 0.92524 0.90395 0.91138 0.92194 0.91369 0.91638 0.90791 0.95018 0.91117 0.90856 0.88744 0.91345 0.95612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.99 37.16 0.33 -1.97 16 2 C 0.01 0.18 2.81 -91.77 -0.26 -0.08 16 3 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 4 C -0.01 -0.17 3.50 -27.88 -0.10 -0.27 16 5 C -0.52 -13.70 8.96 -34.44 -0.31 -14.01 16 6 H 0.08 2.21 7.30 -52.49 -0.38 1.83 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.45 13.96 55.43 0.77 -25.67 16 9 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.21 3.93 7.02 -13.05 -0.09 3.84 16 14 N -0.49 -8.83 11.55 -9.86 -0.11 -8.94 16 15 C 0.17 2.90 6.05 -156.36 -0.95 1.95 16 16 C 0.20 2.65 0.68 -132.76 -0.09 2.56 16 17 C -0.18 -2.08 7.77 37.16 0.29 -1.79 16 18 C -0.13 -1.51 8.22 37.15 0.31 -1.20 16 19 N -0.53 -6.57 4.76 -236.77 -1.13 -7.69 16 20 C 0.02 0.17 8.82 60.06 0.53 0.70 16 21 C 0.00 0.06 8.85 60.06 0.53 0.59 16 22 N -0.38 -6.76 9.06 30.90 0.28 -6.48 16 23 O 0.07 1.28 11.31 18.10 0.20 1.49 16 24 H 0.09 1.61 6.95 -51.92 -0.36 1.25 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 28 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.66 6.40 -51.93 -0.33 0.33 16 32 H 0.06 0.75 6.50 -51.93 -0.34 0.42 16 33 H 0.07 0.59 6.40 -51.93 -0.33 0.26 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.26 6.30 -51.93 -0.33 -0.07 16 37 H 0.07 0.57 8.12 -51.93 -0.42 0.14 16 38 H 0.07 0.58 6.30 -51.93 -0.33 0.25 16 39 H 0.09 1.44 5.02 -51.93 -0.26 1.18 16 40 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.03 0.31 6.41 -51.93 -0.33 -0.03 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -29.41 321.72 -6.01 -35.42 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.31 Total: -1.61 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 0.10 Total: -7.73 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.19 Total: -48.79 kcal Atomic # 8 Polarization: 1.28 SS G_CDS: 0.20 Total: 1.49 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.41 -6.01 -35.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395462350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.169 kcal (2) G-P(sol) polarization free energy of solvation -29.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds