Wall clock time and date at job start Mon Mar 30 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47132 * 2 1 4 4 C 1.53002 * 109.47335 * 120.00117 * 2 1 3 5 5 C 1.50699 * 109.47145 * 294.99939 * 4 2 1 6 6 H 1.08000 * 119.99973 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00106 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00173 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99947 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46743 * 90.00236 * 9 7 5 11 11 H 1.48495 * 109.47051 * 210.00082 * 9 7 5 12 12 H 1.48500 * 109.46849 * 330.00405 * 9 7 5 13 13 C 1.50704 * 109.46745 * 240.00180 * 2 1 3 14 14 N 1.31130 * 126.54858 * 120.00297 * 13 2 1 15 15 C 1.34496 * 105.61281 * 180.02562 * 14 13 2 16 16 C 1.50699 * 126.28732 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47078 * 60.00083 * 16 15 14 18 18 C 1.52992 * 109.46956 * 299.99770 * 16 15 14 19 19 N 1.46906 * 109.46750 * 180.02562 * 16 15 14 20 20 C 1.46898 * 110.99498 * 180.02562 * 19 16 15 21 21 C 1.46897 * 110.99868 * 303.94903 * 19 16 15 22 22 N 1.29955 * 107.42496 * 0.23934 * 15 14 13 23 23 O 1.21304 * 110.24800 * 359.57791 * 22 15 14 24 24 H 1.09008 * 109.46558 * 299.99884 * 1 2 3 25 25 H 1.08999 * 109.47404 * 59.99299 * 1 2 3 26 26 H 1.09001 * 109.47346 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46983 * 54.99451 * 4 2 1 28 28 H 1.08998 * 109.46968 * 174.99770 * 4 2 1 29 29 H 0.96998 * 120.00099 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47153 * 299.99793 * 17 16 15 31 31 H 1.09001 * 109.46832 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.47261 * 59.99965 * 17 16 15 33 33 H 1.09001 * 109.47066 * 180.02562 * 18 16 15 34 34 H 1.08996 * 109.47747 * 299.99900 * 18 16 15 35 35 H 1.09002 * 109.47103 * 60.00312 * 18 16 15 36 36 H 1.08997 * 109.47334 * 60.00216 * 20 19 16 37 37 H 1.09000 * 109.47199 * 180.02562 * 20 19 16 38 38 H 1.08995 * 109.47296 * 299.99915 * 20 19 16 39 39 H 1.09004 * 109.47141 * 60.00723 * 21 19 16 40 40 H 1.09001 * 109.46689 * 180.02562 * 21 19 16 41 41 H 1.08990 * 109.47599 * 300.00086 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0570 2.4766 6 1 1.0801 0.9741 2.3758 7 6 1.9934 -0.4017 3.7282 8 7 1.6451 0.2772 4.7994 9 14 2.9638 -1.9884 3.9027 10 1 4.4172 -1.6849 3.8779 11 1 2.6166 -2.6420 5.1901 12 1 2.6291 -2.8995 2.7788 13 6 2.0323 -0.7104 -1.2305 14 7 2.7892 -0.2007 -2.1722 15 6 2.9808 -1.1931 -3.0595 16 6 3.7870 -1.1103 -4.3300 17 6 5.2360 -0.7538 -3.9921 18 6 3.1954 -0.0321 -5.2400 19 7 3.7492 -2.4071 -5.0193 20 6 4.5268 -2.3640 -6.2648 21 6 4.2231 -3.4845 -4.1403 22 7 2.3382 -2.2349 -2.6229 23 8 1.7910 -1.9801 -1.5707 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.6054 -1.7198 1.2952 28 1 3.1264 -0.7995 1.2055 29 1 1.8930 -0.0454 5.6799 30 1 5.2637 0.2084 -3.4809 31 1 5.8193 -0.6944 -4.9110 32 1 5.6575 -1.5220 -3.3437 33 1 3.7783 0.0274 -6.1592 34 1 2.1632 -0.2861 -5.4808 35 1 3.2231 0.9301 -4.7288 36 1 5.5643 -2.1194 -6.0371 37 1 4.4817 -3.3364 -6.7551 38 1 4.1112 -1.6042 -6.9265 39 1 3.5864 -3.5394 -3.2572 40 1 4.1850 -4.4332 -4.6756 41 1 5.2495 -3.2803 -3.8361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395462350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:55 Heat of formation + Delta-G solvation = 53.233917 kcal Electronic energy + Delta-G solvation = -21158.895543 eV Core-core repulsion = 18076.793010 eV Total energy + Delta-G solvation = -3082.102533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.59268 -40.16187 -37.59950 -36.42308 -34.49919 -33.02689 -32.44785 -29.56247 -29.09517 -27.98811 -26.16054 -25.92489 -24.59848 -24.08045 -21.96507 -20.03966 -19.13716 -19.02820 -18.08843 -17.26105 -16.49756 -16.16131 -15.95026 -15.69056 -15.37960 -15.01651 -14.63793 -14.57808 -14.02694 -13.88740 -13.41092 -13.24288 -13.14571 -13.00409 -12.97508 -12.88140 -12.62440 -12.54046 -12.47042 -12.30914 -12.18012 -11.99739 -11.90443 -11.80336 -11.67167 -11.32349 -10.77153 -10.71518 -9.39904 -8.26896 -6.30007 0.13326 1.20063 1.35135 1.38647 1.47900 1.84888 2.35951 2.36301 2.73542 3.08457 3.20026 3.66508 3.83646 4.03654 4.14510 4.20032 4.21653 4.26783 4.39387 4.52459 4.58172 4.62205 4.66128 4.69233 4.77528 4.82584 4.85818 4.93407 4.95536 5.02297 5.11619 5.11955 5.16353 5.21466 5.32353 5.46169 5.61004 5.86507 6.01131 6.26924 6.76509 7.16661 7.33767 8.88483 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.029882 B = 0.004664 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.795356 B = 6001.963922 C = 6368.678236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.017 3.983 3 H 0.111 0.889 4 C -0.003 4.003 5 C -0.516 4.516 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.942 5.942 9 Si 0.930 3.070 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.252 1.252 13 C 0.208 3.792 14 N -0.498 5.498 15 C 0.176 3.824 16 C 0.196 3.804 17 C -0.171 4.171 18 C -0.130 4.130 19 N -0.543 5.543 20 C 0.018 3.982 21 C 0.007 3.993 22 N -0.387 5.387 23 O 0.055 5.945 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.013 0.987 29 H 0.266 0.734 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 -4.183 -21.877 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.003 4.003 3 H 0.129 0.871 4 C -0.041 4.041 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.583 5.583 9 Si 0.755 3.245 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.176 1.176 13 C -0.012 4.012 14 N -0.232 5.232 15 C -0.097 4.097 16 C 0.105 3.895 17 C -0.231 4.231 18 C -0.188 4.188 19 N -0.267 5.267 20 C -0.129 4.129 21 C -0.141 4.141 22 N -0.099 5.099 23 O 0.003 5.997 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.413 -4.751 -22.441 23.568 hybrid contribution 1.079 -0.437 1.294 1.741 sum 6.492 -5.188 -21.147 22.721 Atomic orbital electron populations 1.21735 0.91155 1.03034 1.02926 1.19889 0.98020 0.98276 0.84144 0.87100 1.19590 0.95999 0.96546 0.92014 1.21192 1.35112 1.09167 0.89977 0.92532 1.25723 0.96640 1.00016 0.95679 1.70010 1.48411 1.41139 0.98730 0.85956 0.79408 0.80918 0.78226 1.19776 1.20823 1.17553 1.29371 0.92169 0.82020 0.97599 1.71843 1.18013 1.29851 1.03474 1.26084 0.99278 0.84968 0.99400 1.19416 0.92492 0.92091 0.85536 1.22400 0.94667 1.02518 1.03490 1.21851 1.01388 0.96192 0.99335 1.62130 1.55935 1.02208 1.06465 1.22623 0.95891 1.04128 0.90292 1.22719 0.98322 0.94924 0.98142 1.74641 1.13351 1.23977 0.97940 1.85298 1.55015 1.30060 1.29308 0.90594 0.91387 0.91977 0.95235 0.96879 0.92453 0.91231 0.88251 0.93381 0.88325 0.92641 0.91284 0.93936 0.90070 0.89505 0.91565 0.89851 0.95207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 8.99 71.98 0.65 -3.67 16 2 C 0.02 0.64 2.81 -11.54 -0.03 0.60 16 3 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 4 C 0.00 -0.14 3.50 29.85 0.10 -0.04 16 5 C -0.52 -27.53 8.96 25.60 0.23 -27.30 16 6 H 0.06 3.21 7.30 -2.91 -0.02 3.19 16 7 C 0.02 0.97 5.47 84.65 0.46 1.43 16 8 N -0.94 -56.63 13.96 21.45 0.30 -56.33 16 9 Si 0.93 43.24 27.47 68.60 1.88 45.12 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 13 C 0.21 7.52 7.02 88.38 0.62 8.14 16 14 N -0.50 -17.37 11.55 -303.16 -3.50 -20.87 16 15 C 0.18 5.67 6.05 138.46 0.84 6.51 16 16 C 0.20 4.72 0.68 2.78 0.00 4.73 16 17 C -0.17 -3.60 7.77 71.98 0.56 -3.04 16 18 C -0.13 -2.57 8.22 71.98 0.59 -1.97 16 19 N -0.54 -12.12 4.76 -903.01 -4.30 -16.41 16 20 C 0.02 0.25 8.82 127.69 1.13 1.38 16 21 C 0.01 0.17 8.85 127.69 1.13 1.30 16 22 N -0.39 -13.55 9.06 -60.29 -0.55 -14.10 16 23 O 0.06 2.04 11.31 74.85 0.85 2.88 16 24 H 0.08 2.73 6.95 -2.38 -0.02 2.71 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.03 1.31 7.20 -2.39 -0.02 1.30 16 28 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 29 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 1.49 6.40 -2.39 -0.02 1.47 16 32 H 0.05 1.12 6.50 -2.38 -0.02 1.10 16 33 H 0.10 1.33 6.40 -2.39 -0.02 1.31 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 0.53 6.30 -2.39 -0.02 0.51 16 37 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 38 H 0.09 1.01 6.30 -2.39 -0.02 1.00 16 39 H 0.07 1.96 5.02 -2.38 -0.01 1.95 16 40 H 0.08 1.65 8.12 -2.39 -0.02 1.63 16 41 H 0.03 0.66 6.41 -2.39 -0.02 0.64 16 Total: -1.00 -63.13 321.72 1.93 -61.20 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.96 Total: 10.45 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 6.28 Total: -11.94 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -8.04 Total: -107.71 kcal Atomic # 8 Polarization: 2.04 SS G_CDS: 0.85 Total: 2.88 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Total: -63.13 1.93 -61.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395462350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.438 kcal (2) G-P(sol) polarization free energy of solvation -63.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds