Wall clock time and date at job start Mon Mar 30 2020 07:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00434 * 2 1 4 4 H 1.48500 * 109.47144 * 270.00732 * 3 2 1 5 5 H 1.48499 * 109.47108 * 30.00104 * 3 2 1 6 6 H 1.48499 * 109.47070 * 150.00393 * 3 2 1 7 7 C 1.37878 * 119.99433 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.53120 * 109.52352 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.27958 * 182.43809 * 10 9 7 12 12 N 1.46850 * 109.52059 * 59.17791 * 11 10 9 13 13 C 1.46903 * 110.99921 * 174.16333 * 12 11 10 14 14 C 1.53001 * 109.47306 * 176.22264 * 13 12 11 15 15 C 1.53004 * 109.47086 * 61.94941 * 14 13 12 16 16 C 1.53001 * 109.46831 * 180.02562 * 15 14 13 17 17 C 1.52993 * 109.46886 * 299.99669 * 16 15 14 18 18 O 1.42898 * 109.47464 * 300.00061 * 17 16 15 19 19 C 1.53004 * 109.47115 * 60.00505 * 17 16 15 20 20 C 1.52991 * 109.46840 * 299.99538 * 19 17 16 21 21 C 1.46845 * 111.20146 * 298.25724 * 12 11 10 22 22 C 1.53037 * 109.52211 * 61.74164 * 21 12 11 23 23 H 0.97004 * 119.99341 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.57449 * 300.15736 * 9 7 2 25 25 H 1.09005 * 109.50258 * 62.50287 * 10 9 7 26 26 H 1.09000 * 109.53423 * 302.39896 * 10 9 7 27 27 H 1.08999 * 109.46245 * 299.16769 * 11 10 9 28 28 H 1.08993 * 109.45766 * 179.18902 * 11 10 9 29 29 H 1.08998 * 109.47218 * 56.21775 * 13 12 11 30 30 H 1.09011 * 109.46899 * 296.22225 * 13 12 11 31 31 H 1.09000 * 109.46606 * 301.95357 * 14 13 12 32 32 H 1.09002 * 109.47242 * 59.99934 * 15 14 13 33 33 H 1.09002 * 109.46780 * 300.00448 * 15 14 13 34 34 H 1.08991 * 109.47158 * 60.00473 * 16 15 14 35 35 H 1.09000 * 109.46683 * 180.02562 * 16 15 14 36 36 H 1.09008 * 109.47082 * 180.02562 * 17 16 15 37 37 H 0.96703 * 113.99885 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.46780 * 179.97438 * 19 17 16 39 39 H 1.08993 * 109.47047 * 59.99995 * 19 17 16 40 40 H 1.09004 * 109.47449 * 299.99654 * 20 19 17 41 41 H 1.09003 * 109.47191 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.46774 * 181.76229 * 21 12 11 43 43 H 1.09003 * 109.46296 * 301.72778 * 21 12 11 44 44 H 1.09001 * 109.50222 * 180.88302 * 22 21 12 45 45 H 1.08997 * 109.50188 * 60.76448 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4399 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2448 -3.6640 -0.0005 11 6 1.4749 -4.9852 -0.0620 12 7 0.6541 -5.0186 -1.2792 13 6 0.0077 -6.3276 -1.4424 14 6 -0.9104 -6.2941 -2.6660 15 6 -0.0782 -6.0216 -3.9207 16 6 -0.9964 -5.9875 -5.1441 17 6 -1.7070 -7.3349 -5.2861 18 8 -0.7360 -8.3708 -5.4480 19 6 -2.5391 -7.6074 -4.0314 20 6 -1.6210 -7.6416 -2.8081 21 6 -0.3396 -3.9374 -1.2794 22 6 0.3761 -2.5850 -1.2543 23 1 -0.4849 0.8401 0.0004 24 1 0.6218 -2.5576 0.8877 25 1 2.8419 -3.6329 0.9109 26 1 2.9001 -3.5839 -0.8679 27 1 0.8306 -5.0711 0.8130 28 1 2.1802 -5.8160 -0.0767 29 1 -0.5800 -6.5561 -0.5533 30 1 0.7700 -7.0945 -1.5810 31 1 -1.6512 -5.5041 -2.5427 32 1 0.6627 -6.8115 -4.0439 33 1 0.4278 -5.0615 -3.8195 34 1 -1.7369 -5.1973 -5.0206 35 1 -0.4035 -5.7938 -6.0379 36 1 -2.3608 -7.3108 -6.1580 37 1 -1.1162 -9.2547 -5.5446 38 1 -3.0457 -8.5672 -4.1328 39 1 -3.2797 -6.8174 -3.9080 40 1 -0.8804 -8.4318 -2.9315 41 1 -2.2138 -7.8352 -1.9141 42 1 -0.9524 -4.0074 -2.1782 43 1 -0.9754 -4.0283 -0.3987 44 1 -0.3619 -1.7830 -1.2386 45 1 1.0014 -2.4877 -2.1417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397174605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:10 Heat of formation + Delta-G solvation = -77.903291 kcal Electronic energy + Delta-G solvation = -21600.011867 eV Core-core repulsion = 18615.763141 eV Total energy + Delta-G solvation = -2984.248725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.55176 -37.98186 -35.49872 -33.60408 -31.61380 -30.79697 -29.79659 -29.54269 -26.15924 -24.11804 -22.71282 -22.25733 -21.62396 -20.45848 -19.42688 -18.45408 -16.93556 -16.33718 -15.85577 -15.21598 -14.71484 -14.47278 -14.36164 -14.09237 -13.37102 -13.18364 -12.95102 -12.68271 -12.50642 -12.28587 -12.16056 -11.98601 -11.82133 -11.32535 -11.13668 -10.98746 -10.87835 -10.74489 -10.66486 -10.36464 -10.14761 -10.13022 -9.92934 -9.88354 -9.69184 -9.33260 -8.88894 -8.61386 -8.24155 -7.61461 -5.92760 -3.97731 3.34329 3.40790 3.44325 4.16622 4.44603 4.49450 4.71128 4.76130 4.84487 5.13824 5.30795 5.37154 5.37381 5.44626 5.56772 5.57858 5.73407 5.80019 5.83645 5.89922 5.96928 6.02346 6.07588 6.16006 6.21904 6.26102 6.28836 6.39672 6.41446 6.63147 6.67218 6.70913 6.78150 6.93438 7.15505 7.24958 7.51714 7.54945 7.70367 7.80389 7.91118 8.11560 8.22401 8.54050 9.06013 9.66344 11.13383 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.004161 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.823514 B = 6727.417309 C = 7073.214947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.532 5.532 13 C 0.061 3.939 14 C -0.087 4.087 15 C -0.100 4.100 16 C -0.115 4.115 17 C 0.105 3.895 18 O -0.561 6.561 19 C -0.150 4.150 20 C -0.108 4.108 21 C 0.053 3.947 22 C -0.103 4.103 23 H 0.258 0.742 24 H 0.019 0.981 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.021 0.979 28 H 0.055 0.945 29 H 0.022 0.978 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.371 0.629 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.018 0.982 44 H 0.090 0.910 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 -15.794 -8.005 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.256 5.256 13 C -0.067 4.067 14 C -0.106 4.106 15 C -0.138 4.138 16 C -0.152 4.152 17 C 0.046 3.954 18 O -0.366 6.366 19 C -0.188 4.188 20 C -0.146 4.146 21 C -0.074 4.074 22 C -0.141 4.141 23 H 0.068 0.932 24 H 0.037 0.963 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.217 0.783 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.036 0.964 44 H 0.108 0.892 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.852 -15.069 -8.337 17.892 hybrid contribution -0.642 0.299 0.705 0.999 sum -5.494 -14.771 -7.632 17.510 Atomic orbital electron populations 1.69889 1.05856 1.26188 1.51273 1.24963 0.94825 0.98950 0.95273 0.86644 0.79888 0.83708 0.78044 1.20743 1.21374 1.20013 1.21229 0.92875 0.90731 1.49894 0.92803 1.18683 0.92721 0.91705 0.93988 1.21670 0.98685 0.93835 1.00170 1.22092 0.95788 0.99124 0.89693 1.62021 1.23589 1.02124 1.37911 1.22096 0.96308 0.92464 0.95869 1.21263 0.97241 0.96818 0.95254 1.21364 0.97393 1.03170 0.91827 1.21591 0.99575 0.94308 0.99742 1.21807 0.89503 0.88811 0.95239 1.86567 1.35944 1.18220 1.95883 1.22216 0.98481 1.01720 0.96343 1.21452 0.98373 0.98147 0.96676 1.22354 0.93335 0.93084 0.98650 1.21646 1.00096 0.93121 0.99275 0.93186 0.96279 0.93366 0.92520 0.96054 0.92625 0.95997 0.91542 0.91016 0.91646 0.90407 0.90908 0.91610 0.93417 0.78331 0.92199 0.91157 0.91473 0.92560 0.92083 0.96374 0.89153 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 11.37 55.43 0.63 -25.06 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.21 8.56 -34.44 -0.29 -14.50 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.11 -2.28 5.32 -26.65 -0.14 -2.43 16 11 C 0.06 1.14 5.46 -3.83 -0.02 1.12 16 12 N -0.53 -9.62 4.08 -234.66 -0.96 -10.58 16 13 C 0.06 0.91 4.55 -3.82 -0.02 0.89 16 14 C -0.09 -1.15 1.70 -90.62 -0.15 -1.31 16 15 C -0.10 -1.37 4.84 -26.73 -0.13 -1.50 16 16 C -0.11 -1.34 5.66 -26.73 -0.15 -1.49 16 17 C 0.11 1.04 3.77 -26.73 -0.10 0.94 16 18 O -0.56 -5.77 11.97 -35.23 -0.42 -6.19 16 19 C -0.15 -1.39 5.64 -26.73 -0.15 -1.54 16 20 C -0.11 -1.18 5.06 -26.74 -0.14 -1.31 16 21 C 0.05 1.05 4.97 -3.83 -0.02 1.03 16 22 C -0.10 -2.47 5.12 -26.65 -0.14 -2.60 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.93 8.12 -51.93 -0.42 0.50 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 31 H 0.07 1.02 6.07 -51.93 -0.32 0.70 16 32 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 33 H 0.08 1.24 7.55 -51.93 -0.39 0.85 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.37 2.26 9.08 45.56 0.41 2.67 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.74 7.68 -51.93 -0.40 0.35 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 1.11 5.70 -51.93 -0.30 0.82 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 45 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -29.32 334.51 -10.06 -39.39 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.59 Total: 0.98 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -1.75 Total: -20.10 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.33 Total: -35.64 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.42 Total: -6.19 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.32 -10.06 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397174605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.515 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds