Wall clock time and date at job start Mon Mar 30 2020 07:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00434 * 2 1 4 4 H 1.48500 * 109.47144 * 270.00732 * 3 2 1 5 5 H 1.48499 * 109.47108 * 30.00104 * 3 2 1 6 6 H 1.48499 * 109.47070 * 150.00393 * 3 2 1 7 7 C 1.37878 * 119.99433 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00277 * 359.97438 * 7 2 1 10 10 C 1.53120 * 109.52352 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.27958 * 182.43809 * 10 9 7 12 12 N 1.46850 * 109.52059 * 59.17791 * 11 10 9 13 13 C 1.46903 * 110.99921 * 174.16333 * 12 11 10 14 14 C 1.53001 * 109.47306 * 176.22264 * 13 12 11 15 15 C 1.53004 * 109.47086 * 61.94941 * 14 13 12 16 16 C 1.53001 * 109.46831 * 180.02562 * 15 14 13 17 17 C 1.52993 * 109.46886 * 299.99669 * 16 15 14 18 18 O 1.42898 * 109.47464 * 300.00061 * 17 16 15 19 19 C 1.53004 * 109.47115 * 60.00505 * 17 16 15 20 20 C 1.52991 * 109.46840 * 299.99538 * 19 17 16 21 21 C 1.46845 * 111.20146 * 298.25724 * 12 11 10 22 22 C 1.53037 * 109.52211 * 61.74164 * 21 12 11 23 23 H 0.97004 * 119.99341 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.57449 * 300.15736 * 9 7 2 25 25 H 1.09005 * 109.50258 * 62.50287 * 10 9 7 26 26 H 1.09000 * 109.53423 * 302.39896 * 10 9 7 27 27 H 1.08999 * 109.46245 * 299.16769 * 11 10 9 28 28 H 1.08993 * 109.45766 * 179.18902 * 11 10 9 29 29 H 1.08998 * 109.47218 * 56.21775 * 13 12 11 30 30 H 1.09011 * 109.46899 * 296.22225 * 13 12 11 31 31 H 1.09000 * 109.46606 * 301.95357 * 14 13 12 32 32 H 1.09002 * 109.47242 * 59.99934 * 15 14 13 33 33 H 1.09002 * 109.46780 * 300.00448 * 15 14 13 34 34 H 1.08991 * 109.47158 * 60.00473 * 16 15 14 35 35 H 1.09000 * 109.46683 * 180.02562 * 16 15 14 36 36 H 1.09008 * 109.47082 * 180.02562 * 17 16 15 37 37 H 0.96703 * 113.99885 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.46780 * 179.97438 * 19 17 16 39 39 H 1.08993 * 109.47047 * 59.99995 * 19 17 16 40 40 H 1.09004 * 109.47449 * 299.99654 * 20 19 17 41 41 H 1.09003 * 109.47191 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.46774 * 181.76229 * 21 12 11 43 43 H 1.09003 * 109.46296 * 301.72778 * 21 12 11 44 44 H 1.09001 * 109.50222 * 180.88302 * 22 21 12 45 45 H 1.08997 * 109.50188 * 60.76448 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4399 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2448 -3.6640 -0.0005 11 6 1.4749 -4.9852 -0.0620 12 7 0.6541 -5.0186 -1.2792 13 6 0.0077 -6.3276 -1.4424 14 6 -0.9104 -6.2941 -2.6660 15 6 -0.0782 -6.0216 -3.9207 16 6 -0.9964 -5.9875 -5.1441 17 6 -1.7070 -7.3349 -5.2861 18 8 -0.7360 -8.3708 -5.4480 19 6 -2.5391 -7.6074 -4.0314 20 6 -1.6210 -7.6416 -2.8081 21 6 -0.3396 -3.9374 -1.2794 22 6 0.3761 -2.5850 -1.2543 23 1 -0.4849 0.8401 0.0004 24 1 0.6218 -2.5576 0.8877 25 1 2.8419 -3.6329 0.9109 26 1 2.9001 -3.5839 -0.8679 27 1 0.8306 -5.0711 0.8130 28 1 2.1802 -5.8160 -0.0767 29 1 -0.5800 -6.5561 -0.5533 30 1 0.7700 -7.0945 -1.5810 31 1 -1.6512 -5.5041 -2.5427 32 1 0.6627 -6.8115 -4.0439 33 1 0.4278 -5.0615 -3.8195 34 1 -1.7369 -5.1973 -5.0206 35 1 -0.4035 -5.7938 -6.0379 36 1 -2.3608 -7.3108 -6.1580 37 1 -1.1162 -9.2547 -5.5446 38 1 -3.0457 -8.5672 -4.1328 39 1 -3.2797 -6.8174 -3.9080 40 1 -0.8804 -8.4318 -2.9315 41 1 -2.2138 -7.8352 -1.9141 42 1 -0.9524 -4.0074 -2.1782 43 1 -0.9754 -4.0283 -0.3987 44 1 -0.3619 -1.7830 -1.2386 45 1 1.0014 -2.4877 -2.1417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397174605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:10 Heat of formation + Delta-G solvation = -96.336593 kcal Electronic energy + Delta-G solvation = -21600.811195 eV Core-core repulsion = 18615.763141 eV Total energy + Delta-G solvation = -2985.048053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.64401 -39.33462 -36.67555 -35.23703 -33.30051 -31.73024 -31.46615 -30.84285 -27.87725 -25.63051 -23.97109 -23.63660 -23.14141 -21.56313 -20.59380 -20.14323 -18.44400 -17.70363 -16.93966 -16.66128 -16.29901 -15.71728 -15.62810 -15.39320 -14.84048 -14.62023 -14.30101 -14.16692 -14.10275 -13.61253 -13.28185 -13.19968 -12.91355 -12.89531 -12.69654 -12.53688 -12.32257 -12.21646 -11.98687 -11.91675 -11.81810 -11.59191 -11.36879 -11.16554 -10.86218 -10.76802 -10.60409 -10.47733 -10.34512 -9.10129 -8.07446 -6.20839 1.41059 1.41660 1.51901 2.44192 3.08033 3.19430 3.46668 3.81887 3.88828 3.93405 4.21738 4.22025 4.28337 4.40924 4.41292 4.43747 4.54277 4.58624 4.64363 4.70069 4.75705 4.80053 4.88476 4.92950 4.96545 5.00688 5.08086 5.15130 5.18818 5.24441 5.25168 5.32896 5.35900 5.41843 5.55209 5.59465 5.64731 5.68110 6.01492 6.05092 6.34134 6.39408 6.42089 6.90543 7.02949 7.46770 8.97171 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.004161 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.823514 B = 6727.417309 C = 7073.214947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.044 3.956 10 C -0.099 4.099 11 C 0.066 3.934 12 N -0.537 5.537 13 C 0.062 3.938 14 C -0.083 4.083 15 C -0.093 4.093 16 C -0.118 4.118 17 C 0.108 3.892 18 O -0.579 6.579 19 C -0.146 4.146 20 C -0.103 4.103 21 C 0.069 3.931 22 C -0.093 4.093 23 H 0.260 0.740 24 H -0.014 1.014 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.019 0.981 28 H 0.084 0.916 29 H 0.027 0.973 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.389 0.611 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.008 0.992 44 H 0.060 0.940 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.742 -17.413 -8.720 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.025 3.975 10 C -0.137 4.137 11 C -0.062 4.062 12 N -0.262 5.262 13 C -0.065 4.065 14 C -0.102 4.102 15 C -0.131 4.131 16 C -0.156 4.156 17 C 0.050 3.950 18 O -0.387 6.387 19 C -0.183 4.183 20 C -0.141 4.141 21 C -0.059 4.059 22 C -0.131 4.131 23 H 0.069 0.931 24 H 0.004 0.996 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.103 0.897 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.238 0.762 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.026 0.974 44 H 0.078 0.922 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.165 -16.717 -9.056 19.702 hybrid contribution -0.523 0.787 0.929 1.325 sum -5.688 -15.930 -8.127 18.766 Atomic orbital electron populations 1.70026 1.07142 1.27008 1.51571 1.25737 0.95686 1.02312 0.94825 0.85631 0.78748 0.79503 0.78227 1.20143 1.20834 1.19387 1.21593 0.92963 0.92321 1.50344 0.93201 1.18664 0.93173 0.92611 0.93047 1.21535 0.97971 0.94117 1.00044 1.22030 0.96097 0.98197 0.89876 1.61974 1.23423 1.03219 1.37564 1.22193 0.96885 0.90587 0.96881 1.21226 0.96635 0.98224 0.94096 1.21235 0.97542 1.01112 0.93182 1.21608 0.99394 0.96127 0.98441 1.21750 0.89304 0.87628 0.96338 1.86522 1.36743 1.19507 1.95949 1.22200 0.98027 1.03118 0.94990 1.21403 0.98555 0.96228 0.97940 1.22082 0.93159 0.91694 0.98976 1.21400 0.99052 0.94784 0.97907 0.93107 0.99551 0.92990 0.93134 0.96325 0.89721 0.95525 0.90371 0.92072 0.92512 0.93327 0.90660 0.92118 0.91656 0.76164 0.89764 0.91097 0.91349 0.91891 0.90425 0.97386 0.92202 0.95285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.18 11.37 21.45 0.24 -53.93 16 2 C 0.01 0.72 5.31 84.65 0.45 1.17 16 3 Si 0.95 44.68 29.54 68.60 2.03 46.70 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.53 -30.58 8.56 25.60 0.22 -30.36 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.04 2.28 2.16 -11.46 -0.02 2.26 16 10 C -0.10 -4.30 5.32 30.65 0.16 -4.14 16 11 C 0.07 2.39 5.46 86.33 0.47 2.87 16 12 N -0.54 -19.09 4.08 -896.34 -3.66 -22.75 16 13 C 0.06 1.75 4.55 86.30 0.39 2.14 16 14 C -0.08 -2.07 1.70 -10.79 -0.02 -2.09 16 15 C -0.09 -2.47 4.84 30.60 0.15 -2.33 16 16 C -0.12 -2.62 5.66 30.59 0.17 -2.45 16 17 C 0.11 1.86 3.77 30.59 0.12 1.97 16 18 O -0.58 -10.39 11.97 -148.98 -1.78 -12.17 16 19 C -0.15 -2.23 5.64 30.59 0.17 -2.06 16 20 C -0.10 -1.97 5.06 30.59 0.15 -1.81 16 21 C 0.07 2.75 4.97 86.33 0.43 3.18 16 22 C -0.09 -4.61 5.12 30.65 0.16 -4.45 16 23 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 24 H -0.01 -0.80 8.14 -2.38 -0.02 -0.81 16 25 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 29 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.06 1.66 6.07 -2.39 -0.01 1.65 16 32 H 0.06 1.59 7.68 -2.39 -0.02 1.58 16 33 H 0.05 1.56 7.55 -2.39 -0.02 1.54 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.39 3.52 9.08 -74.06 -0.67 2.85 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.31 7.68 -2.38 -0.02 1.29 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 2.84 5.70 -2.39 -0.01 2.83 16 43 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.06 3.32 6.17 -2.39 -0.01 3.30 16 45 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -64.10 334.51 0.09 -64.00 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.27 Total: 14.23 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 3.00 Total: -36.09 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -3.42 Total: -76.68 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -1.78 Total: -12.17 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -64.10 0.09 -64.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397174605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.333 kcal (2) G-P(sol) polarization free energy of solvation -64.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds