Wall clock time and date at job start Mon Mar 30 2020 07:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00109 * 2 1 4 4 H 1.48505 * 109.46993 * 269.99568 * 3 2 1 5 5 H 1.48505 * 109.46918 * 29.99536 * 3 2 1 6 6 H 1.48498 * 109.47416 * 149.99775 * 3 2 1 7 7 C 1.37886 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99599 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.78974 * 298.20618 * 9 7 2 11 11 C 1.54595 * 110.72565 * 61.45818 * 9 7 2 12 12 C 1.53996 * 105.14255 * 140.31289 * 11 9 7 13 13 N 1.47897 * 107.05718 * 1.22127 * 12 11 9 14 14 C 1.46899 * 111.00097 * 214.15704 * 13 12 11 15 15 C 1.52994 * 109.47138 * 175.81541 * 14 13 12 16 16 H 1.09004 * 109.47318 * 300.28352 * 15 14 13 17 17 O 1.42907 * 109.47278 * 60.28406 * 15 14 13 18 18 C 1.52999 * 109.47313 * 180.28708 * 15 14 13 19 19 C 1.52998 * 109.47383 * 175.00149 * 18 15 14 20 20 C 1.54269 * 110.03016 * 292.16258 * 19 18 15 21 21 C 1.54889 * 104.19678 * 217.10271 * 20 19 18 22 22 C 1.54891 * 102.74657 * 37.94881 * 21 20 19 23 23 C 1.53879 * 110.03372 * 175.00107 * 19 18 15 24 24 C 1.48533 * 105.82068 * 334.67361 * 13 12 11 25 25 H 0.96995 * 120.00114 * 0.02562 * 1 2 3 26 26 H 1.09000 * 110.30995 * 21.39345 * 11 9 7 27 27 H 1.09010 * 110.39099 * 259.27188 * 11 9 7 28 28 H 1.09002 * 109.91280 * 241.87420 * 12 11 9 29 29 H 1.08999 * 109.91565 * 120.57845 * 12 11 9 30 30 H 1.09003 * 109.47020 * 55.81317 * 14 13 12 31 31 H 1.08997 * 109.47091 * 295.81660 * 14 13 12 32 32 H 0.96700 * 113.99290 * 60.00130 * 17 15 14 33 33 H 1.09002 * 109.46969 * 295.00070 * 18 15 14 34 34 H 1.09001 * 109.46916 * 54.99758 * 18 15 14 35 35 H 1.09002 * 110.01923 * 53.60684 * 19 18 15 36 36 H 1.08998 * 110.48886 * 335.78945 * 20 19 18 37 37 H 1.09002 * 110.48216 * 98.42790 * 20 19 18 38 38 H 1.08994 * 110.76215 * 279.63335 * 21 20 19 39 39 H 1.09006 * 110.91238 * 156.32934 * 21 20 19 40 40 H 1.09003 * 110.48523 * 203.38094 * 22 21 20 41 41 H 1.08994 * 110.60555 * 80.78722 * 22 21 20 42 42 H 1.09006 * 110.03037 * 238.57020 * 23 19 18 43 43 H 1.09001 * 110.02969 * 359.97438 * 23 19 18 44 44 H 1.09000 * 110.66527 * 157.64190 * 24 13 12 45 45 H 1.08996 * 110.66620 * 280.76376 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6401 -2.5931 0.8984 11 6 0.3797 -2.6278 -1.2700 12 6 0.5077 -4.1015 -1.6980 13 7 1.3771 -4.7679 -0.7044 14 6 2.1993 -5.8076 -1.3375 15 6 3.1570 -6.4011 -0.3025 16 1 3.7997 -5.6137 0.0915 17 8 2.4048 -6.9809 0.7653 18 6 4.0183 -7.4791 -0.9637 19 6 5.0594 -7.9848 0.0369 20 6 6.0834 -6.8721 0.3419 21 6 7.4310 -7.6232 0.4795 22 6 7.3281 -8.7132 -0.6162 23 6 5.8509 -9.1555 -0.5723 24 6 2.2271 -3.6957 -0.1263 25 1 -0.4850 0.8400 -0.0004 26 1 0.7561 -1.9717 -2.0549 27 1 -0.6594 -2.3884 -1.0437 28 1 0.9603 -4.1626 -2.6877 29 1 -0.4753 -4.5724 -1.7065 30 1 2.7730 -5.3698 -2.1545 31 1 1.5534 -6.5941 -1.7279 32 1 1.8099 -7.6906 0.4870 33 1 3.3845 -8.3080 -1.2787 34 1 4.5240 -7.0578 -1.8325 35 1 4.5689 -8.3042 0.9565 36 1 6.1269 -6.1578 -0.4803 37 1 5.8314 -6.3669 1.2743 38 1 7.5221 -8.0756 1.4670 39 1 8.2702 -6.9559 0.2829 40 1 7.9844 -9.5517 -0.3829 41 1 7.5733 -8.2985 -1.5939 42 1 5.7451 -10.0427 0.0521 43 1 5.4929 -9.3635 -1.5806 44 1 2.6043 -3.9900 0.8531 45 1 3.0493 -3.4520 -0.7989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397655530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:11 Heat of formation + Delta-G solvation = -97.268131 kcal Electronic energy + Delta-G solvation = -21090.347875 eV Core-core repulsion = 18105.259428 eV Total energy + Delta-G solvation = -2985.088448 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.34236 -39.26069 -37.53963 -35.05821 -33.07703 -32.00475 -30.10115 -29.55637 -28.52865 -26.68685 -24.95021 -22.85586 -21.61511 -21.47919 -21.10644 -20.37425 -18.45305 -17.41647 -16.87366 -16.78754 -16.64944 -16.24556 -15.73074 -15.52628 -14.99320 -14.62124 -14.27090 -14.16355 -13.92489 -13.86810 -13.19287 -12.98667 -12.91041 -12.77183 -12.57438 -12.27144 -12.10476 -12.04913 -11.92794 -11.88733 -11.78887 -11.59166 -11.49217 -11.30573 -11.21650 -11.11796 -10.84104 -10.54916 -10.51123 -9.22367 -8.14653 -6.25757 1.40007 1.40938 1.51613 2.41474 3.08331 3.17219 3.63253 3.68383 3.78664 3.85054 3.98757 4.11168 4.24942 4.32208 4.38652 4.42150 4.50888 4.59907 4.60345 4.63864 4.70720 4.77083 4.80816 4.86895 4.90128 4.94377 5.00399 5.05492 5.11120 5.16415 5.24644 5.27473 5.29517 5.31747 5.43118 5.51266 5.59341 5.61540 5.79566 5.85185 6.01725 6.29145 6.39476 6.84118 7.03591 7.42146 8.94882 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023715 B = 0.004088 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.379960 B = 6848.219075 C = 7678.570769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.054 0.946 9 C 0.042 3.958 10 H -0.003 1.003 11 C -0.093 4.093 12 C 0.042 3.958 13 N -0.517 5.517 14 C 0.015 3.985 15 C 0.116 3.884 16 H 0.075 0.925 17 O -0.564 6.564 18 C -0.132 4.132 19 C -0.085 4.085 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.118 4.118 24 C 0.061 3.939 25 H 0.261 0.739 26 H 0.033 0.967 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.092 0.908 32 H 0.382 0.618 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.870 -18.682 -4.234 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.023 3.977 10 H 0.015 0.985 11 C -0.132 4.132 12 C -0.086 4.086 13 N -0.241 5.241 14 C -0.114 4.114 15 C 0.056 3.944 16 H 0.093 0.907 17 O -0.371 6.371 18 C -0.170 4.170 19 C -0.104 4.104 20 C -0.165 4.165 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.067 4.067 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.230 0.770 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 10.731 -18.410 -3.494 21.594 hybrid contribution 0.205 1.375 -0.830 1.619 sum 10.936 -17.035 -4.324 20.700 Atomic orbital electron populations 1.70107 1.07322 1.27333 1.50894 1.25786 0.95691 1.02526 0.94588 0.85576 0.78730 0.79155 0.78330 1.19923 1.20829 1.19198 1.21434 0.92926 0.91780 1.51310 0.92803 1.19480 0.92827 0.92154 0.93253 0.98465 1.22085 0.99359 0.93356 0.98361 1.22882 0.97837 0.94346 0.93497 1.64721 1.19128 1.10819 1.29473 1.23113 0.96191 0.95836 0.96237 1.21851 0.90904 0.94586 0.87010 0.90749 1.86588 1.59430 1.55826 1.35222 1.22315 0.97797 0.98486 0.98380 1.21665 0.95112 0.95200 0.98427 1.22484 0.95510 0.97713 1.00763 1.22499 0.96744 0.97698 0.99343 1.22360 0.96517 0.98398 0.98797 1.22213 0.94837 0.97320 1.01179 1.23020 0.94796 0.91047 0.97793 0.92986 0.94764 0.94465 0.93743 0.90478 0.94365 0.88949 0.76974 0.89867 0.90787 0.91432 0.92184 0.93191 0.91534 0.91485 0.90909 0.91597 0.91464 0.91064 0.92310 0.95209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.63 12.44 21.45 0.27 -54.37 16 2 C 0.01 0.75 5.33 84.66 0.45 1.20 16 3 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.54 -30.56 8.42 25.60 0.22 -30.34 16 8 H 0.05 3.00 7.78 -2.91 -0.02 2.98 16 9 C 0.04 2.24 2.99 -10.34 -0.03 2.21 16 10 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 11 C -0.09 -4.56 5.51 31.47 0.17 -4.39 16 12 C 0.04 1.63 6.70 86.45 0.58 2.21 16 13 N -0.52 -19.53 5.22 -883.04 -4.61 -24.14 16 14 C 0.01 0.41 4.50 86.30 0.39 0.80 16 15 C 0.12 2.99 2.66 30.59 0.08 3.08 16 16 H 0.07 2.30 6.11 -2.38 -0.01 2.29 16 17 O -0.56 -15.56 12.66 -148.98 -1.89 -17.45 16 18 C -0.13 -2.46 4.02 30.59 0.12 -2.34 16 19 C -0.09 -1.61 2.88 -10.07 -0.03 -1.64 16 20 C -0.13 -2.65 5.46 31.67 0.17 -2.48 16 21 C -0.13 -2.14 6.91 31.89 0.22 -1.92 16 22 C -0.12 -1.79 6.83 31.67 0.22 -1.57 16 23 C -0.12 -1.76 6.46 31.32 0.20 -1.56 16 24 C 0.06 2.70 4.75 86.65 0.41 3.11 16 25 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.03 1.76 7.84 -2.39 -0.02 1.74 16 27 H 0.04 1.94 8.05 -2.38 -0.02 1.92 16 28 H 0.04 1.55 7.67 -2.39 -0.02 1.53 16 29 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.04 1.07 7.97 -2.39 -0.02 1.05 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.38 7.55 9.04 -74.06 -0.67 6.88 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.34 8.00 -2.39 -0.02 1.32 16 35 H 0.07 1.44 7.69 -2.39 -0.02 1.42 16 36 H 0.06 1.30 7.76 -2.39 -0.02 1.28 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.07 0.95 7.67 -2.39 -0.02 0.93 16 44 H 0.06 2.64 7.65 -2.39 -0.02 2.62 16 45 H 0.03 1.30 7.92 -2.39 -0.02 1.28 16 Total: -1.00 -64.32 345.49 -0.77 -65.09 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.26 Total: 18.14 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 3.18 Total: -33.63 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -4.35 Total: -78.51 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -1.89 Total: -17.45 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -64.32 -0.77 -65.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397655530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.178 kcal (2) G-P(sol) polarization free energy of solvation -64.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds