Wall clock time and date at job start Mon Mar 30 2020 07:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.27767 * 57.91036 * 9 7 2 11 11 C 1.54599 * 110.30739 * 295.71425 * 9 7 2 12 12 C 1.54936 * 102.92020 * 219.12954 * 11 9 7 13 13 N 1.48531 * 103.22830 * 37.41634 * 12 11 9 14 14 C 1.46904 * 111.00046 * 200.27790 * 13 12 11 15 15 C 1.52994 * 109.47282 * 307.39765 * 14 13 12 16 16 H 1.09002 * 109.46617 * 305.00087 * 15 14 13 17 17 O 1.42901 * 109.47174 * 64.99437 * 15 14 13 18 18 C 1.52999 * 109.47139 * 184.99758 * 15 14 13 19 19 C 1.53001 * 109.47074 * 174.99703 * 18 15 14 20 20 C 1.54265 * 110.03372 * 292.90973 * 19 18 15 21 21 C 1.54964 * 104.16016 * 217.13535 * 20 19 18 22 22 C 1.54889 * 102.77785 * 37.88789 * 21 20 19 23 23 C 1.53874 * 110.03446 * 175.69117 * 19 18 15 24 24 C 1.47900 * 105.81910 * 320.79115 * 13 12 11 25 25 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.09003 * 110.72311 * 337.48770 * 11 9 7 27 27 H 1.08995 * 110.72264 * 100.77265 * 11 9 7 28 28 H 1.09005 * 110.66576 * 278.98056 * 12 11 9 29 29 H 1.08997 * 110.80903 * 155.91611 * 12 11 9 30 30 H 1.08999 * 109.46747 * 67.39839 * 14 13 12 31 31 H 1.09000 * 109.46819 * 187.39317 * 14 13 12 32 32 H 0.96706 * 113.99467 * 60.00515 * 17 15 14 33 33 H 1.08994 * 109.47277 * 294.99774 * 18 15 14 34 34 H 1.09003 * 109.46717 * 54.99998 * 18 15 14 35 35 H 1.09002 * 110.01706 * 54.29886 * 19 18 15 36 36 H 1.09005 * 110.48828 * 335.78379 * 20 19 18 37 37 H 1.09007 * 110.48983 * 98.42546 * 20 19 18 38 38 H 1.08995 * 110.71867 * 279.57120 * 21 20 19 39 39 H 1.09002 * 110.92448 * 156.29689 * 21 20 19 40 40 H 1.08995 * 110.48849 * 203.40320 * 22 21 20 41 41 H 1.09001 * 110.48559 * 80.76081 * 22 21 20 42 42 H 1.08995 * 110.03675 * 238.57351 * 23 19 18 43 43 H 1.09005 * 110.02784 * 0.02562 * 23 19 18 44 44 H 1.09001 * 109.91971 * 265.98062 * 24 13 12 45 45 H 1.09003 * 110.08292 * 144.77393 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8890 -0.6506 0.8673 11 6 4.0486 -0.5652 -1.3051 12 6 5.2677 -1.4592 -1.6444 13 7 4.8134 -2.8173 -1.2501 14 6 5.9572 -3.7155 -1.0425 15 6 6.8625 -3.6817 -2.2754 16 1 6.2768 -3.9216 -3.1629 17 8 7.4272 -2.3766 -2.4161 18 6 7.9851 -4.7083 -2.1121 19 6 8.8165 -4.7632 -3.3953 20 6 7.9708 -5.3413 -4.5487 21 6 8.9728 -6.2017 -5.3593 22 6 9.8532 -6.8351 -4.2535 23 6 10.0132 -5.7123 -3.2078 24 6 4.0461 -2.6382 0.0016 25 1 -0.4850 0.8400 -0.0004 26 1 3.2995 -0.6183 -2.0952 27 1 4.3611 0.4654 -1.1370 28 1 6.1384 -1.1602 -1.0606 29 1 5.4900 -1.4225 -2.7108 30 1 6.5211 -3.3895 -0.1686 31 1 5.5968 -4.7319 -0.8840 32 1 7.9627 -2.0963 -1.6611 33 1 8.6236 -4.4188 -1.2776 34 1 7.5538 -5.6901 -1.9163 35 1 9.1688 -3.7649 -3.6547 36 1 7.1649 -5.9620 -4.1570 37 1 7.5691 -4.5384 -5.1669 38 1 9.5729 -5.5755 -6.0194 39 1 8.4529 -6.9727 -5.9280 40 1 10.8244 -7.1221 -4.6567 41 1 9.3518 -7.6973 -3.8138 42 1 10.9462 -5.1747 -3.3769 43 1 10.0013 -6.1340 -2.2027 44 1 4.6975 -2.7927 0.8618 45 1 3.2144 -3.3419 0.0347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397655533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:15 Heat of formation + Delta-G solvation = -68.719529 kcal Electronic energy + Delta-G solvation = -21113.140437 eV Core-core repulsion = 18129.289949 eV Total energy + Delta-G solvation = -2983.850488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.43970 -38.21690 -36.46797 -33.04641 -32.12173 -30.92179 -28.92675 -28.33039 -27.78325 -24.92529 -23.32755 -21.87213 -20.80177 -20.33197 -19.65805 -19.24579 -16.89613 -16.67078 -16.03572 -15.74084 -15.08281 -14.88597 -14.52561 -14.14921 -13.74891 -13.53170 -13.22075 -12.99947 -12.72494 -12.29401 -12.15328 -11.74672 -11.51641 -11.38359 -11.30111 -11.20996 -11.11712 -10.94535 -10.84664 -10.63680 -10.55365 -10.53345 -10.43706 -10.02375 -9.77121 -9.48445 -9.36479 -8.92493 -8.49929 -7.77956 -6.01542 -3.99183 3.33361 3.40916 3.42218 4.21298 4.38823 4.43598 4.47064 4.55952 4.60370 4.95576 5.06353 5.13737 5.24308 5.27204 5.33625 5.39986 5.45233 5.48037 5.52787 5.61933 5.69405 5.73653 5.75229 5.81174 5.85996 5.93663 6.03246 6.04455 6.09547 6.10797 6.13840 6.27211 6.32465 6.50668 6.67597 6.79538 6.99596 7.18215 7.25322 7.65101 7.72942 7.73719 7.84823 8.58841 9.02532 9.61136 11.11837 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.045370 B = 0.003561 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.997029 B = 7861.277218 C = 7968.763398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.294 1.294 7 C -0.502 4.502 8 H 0.074 0.926 9 C 0.004 3.996 10 H 0.029 0.971 11 C -0.135 4.135 12 C 0.053 3.947 13 N -0.513 5.513 14 C 0.015 3.985 15 C 0.108 3.892 16 H 0.106 0.894 17 O -0.554 6.554 18 C -0.141 4.141 19 C -0.087 4.087 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.122 4.122 24 C 0.054 3.946 25 H 0.262 0.738 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.030 0.970 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.077 0.923 32 H 0.366 0.634 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.021 0.979 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.809 -10.714 -6.430 24.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.221 1.221 7 C -0.540 4.540 8 H 0.093 0.907 9 C -0.015 4.015 10 H 0.047 0.953 11 C -0.174 4.174 12 C -0.074 4.074 13 N -0.237 5.237 14 C -0.114 4.114 15 C 0.048 3.952 16 H 0.124 0.876 17 O -0.359 6.359 18 C -0.180 4.180 19 C -0.106 4.106 20 C -0.159 4.159 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.160 4.160 24 C -0.073 4.073 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.213 0.787 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.039 0.961 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.006 -10.874 -7.392 23.940 hybrid contribution 1.164 1.214 1.295 2.123 sum 21.170 -9.660 -6.097 24.055 Atomic orbital electron populations 1.69907 1.06248 1.26794 1.51291 1.24993 0.94648 0.98961 0.94609 0.86894 0.79942 0.83791 0.78484 1.20213 1.19227 1.22114 1.21063 0.88346 0.94422 1.50211 0.90746 1.19991 0.97327 0.91062 0.93113 0.95334 1.23025 0.96738 0.96685 1.00921 1.23205 0.95535 0.88201 1.00478 1.64800 1.18605 1.09881 1.30430 1.22971 0.92975 0.99038 0.96432 1.21996 0.92042 0.82148 0.98968 0.87578 1.86704 1.69765 1.32948 1.46492 1.22388 0.97679 1.00260 0.97645 1.21701 0.94755 0.99487 0.94640 1.22478 0.97696 0.99082 0.96606 1.22510 0.97575 0.98912 0.97375 1.22354 0.99579 0.97988 0.96337 1.22236 0.98106 0.96510 0.99123 1.22930 0.96322 1.00007 0.88058 0.92773 0.90678 0.93666 0.95180 0.90207 0.95283 0.90510 0.78686 0.91958 0.90996 0.90414 0.91466 0.91476 0.91734 0.91789 0.92080 0.91789 0.92134 0.91931 0.96106 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.88 22.15 24.86 -169.99 -4.23 17.93 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.27 -6.45 6.40 56.52 0.36 -6.08 16 6 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 7 C -0.50 -14.35 8.96 -34.44 -0.31 -14.66 16 8 H 0.07 2.30 7.59 -52.49 -0.40 1.90 16 9 C 0.00 0.11 2.43 -90.41 -0.22 -0.11 16 10 H 0.03 0.70 7.09 -51.93 -0.37 0.33 16 11 C -0.14 -3.01 4.94 -24.87 -0.12 -3.13 16 12 C 0.05 0.98 4.69 -1.90 -0.01 0.97 16 13 N -0.51 -9.47 5.40 -230.45 -1.24 -10.72 16 14 C 0.02 0.21 4.85 -3.82 -0.02 0.19 16 15 C 0.11 1.27 2.83 -26.73 -0.08 1.20 16 16 H 0.11 1.41 7.34 -51.93 -0.38 1.03 16 17 O -0.55 -6.86 9.29 -35.23 -0.33 -7.18 16 18 C -0.14 -1.31 4.02 -26.73 -0.11 -1.42 16 19 C -0.09 -0.78 2.88 -89.50 -0.26 -1.04 16 20 C -0.12 -1.11 5.42 -25.03 -0.14 -1.24 16 21 C -0.13 -1.01 6.91 -24.70 -0.17 -1.18 16 22 C -0.13 -0.94 6.83 -25.07 -0.17 -1.11 16 23 C -0.12 -0.96 6.46 -25.61 -0.17 -1.13 16 24 C 0.05 1.12 6.35 -2.75 -0.02 1.11 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.07 1.81 7.86 -51.93 -0.41 1.40 16 27 H 0.04 0.98 6.17 -51.93 -0.32 0.66 16 28 H 0.03 0.51 6.96 -51.93 -0.36 0.15 16 29 H 0.08 1.45 7.05 -51.93 -0.37 1.09 16 30 H 0.03 0.40 7.81 -51.93 -0.41 -0.01 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.37 3.56 8.68 45.56 0.40 3.96 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.65 8.02 -51.93 -0.42 0.23 16 35 H 0.08 0.78 7.71 -51.93 -0.40 0.38 16 36 H 0.07 0.63 7.77 -51.93 -0.40 0.22 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 44 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 45 H 0.08 1.69 7.39 -51.93 -0.38 1.31 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -30.74 333.28 -9.44 -40.18 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.57 Total: 1.73 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -1.88 Total: -19.63 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.47 Total: -38.05 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.33 Total: -7.18 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.23 Total: 17.93 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.74 -9.44 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397655533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.539 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds