Wall clock time and date at job start Mon Mar 30 2020 07:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.27767 * 57.91036 * 9 7 2 11 11 C 1.54599 * 110.30739 * 295.71425 * 9 7 2 12 12 C 1.54936 * 102.92020 * 219.12954 * 11 9 7 13 13 N 1.48531 * 103.22830 * 37.41634 * 12 11 9 14 14 C 1.46904 * 111.00046 * 200.27790 * 13 12 11 15 15 C 1.52994 * 109.47282 * 307.39765 * 14 13 12 16 16 H 1.09002 * 109.46617 * 305.00087 * 15 14 13 17 17 O 1.42901 * 109.47174 * 64.99437 * 15 14 13 18 18 C 1.52999 * 109.47139 * 184.99758 * 15 14 13 19 19 C 1.53001 * 109.47074 * 174.99703 * 18 15 14 20 20 C 1.54265 * 110.03372 * 292.90973 * 19 18 15 21 21 C 1.54964 * 104.16016 * 217.13535 * 20 19 18 22 22 C 1.54889 * 102.77785 * 37.88789 * 21 20 19 23 23 C 1.53874 * 110.03446 * 175.69117 * 19 18 15 24 24 C 1.47900 * 105.81910 * 320.79115 * 13 12 11 25 25 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.09003 * 110.72311 * 337.48770 * 11 9 7 27 27 H 1.08995 * 110.72264 * 100.77265 * 11 9 7 28 28 H 1.09005 * 110.66576 * 278.98056 * 12 11 9 29 29 H 1.08997 * 110.80903 * 155.91611 * 12 11 9 30 30 H 1.08999 * 109.46747 * 67.39839 * 14 13 12 31 31 H 1.09000 * 109.46819 * 187.39317 * 14 13 12 32 32 H 0.96706 * 113.99467 * 60.00515 * 17 15 14 33 33 H 1.08994 * 109.47277 * 294.99774 * 18 15 14 34 34 H 1.09003 * 109.46717 * 54.99998 * 18 15 14 35 35 H 1.09002 * 110.01706 * 54.29886 * 19 18 15 36 36 H 1.09005 * 110.48828 * 335.78379 * 20 19 18 37 37 H 1.09007 * 110.48983 * 98.42546 * 20 19 18 38 38 H 1.08995 * 110.71867 * 279.57120 * 21 20 19 39 39 H 1.09002 * 110.92448 * 156.29689 * 21 20 19 40 40 H 1.08995 * 110.48849 * 203.40320 * 22 21 20 41 41 H 1.09001 * 110.48559 * 80.76081 * 22 21 20 42 42 H 1.08995 * 110.03675 * 238.57351 * 23 19 18 43 43 H 1.09005 * 110.02784 * 0.02562 * 23 19 18 44 44 H 1.09001 * 109.91971 * 265.98062 * 24 13 12 45 45 H 1.09003 * 110.08292 * 144.77393 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8890 -0.6506 0.8673 11 6 4.0486 -0.5652 -1.3051 12 6 5.2677 -1.4592 -1.6444 13 7 4.8134 -2.8173 -1.2501 14 6 5.9572 -3.7155 -1.0425 15 6 6.8625 -3.6817 -2.2754 16 1 6.2768 -3.9216 -3.1629 17 8 7.4272 -2.3766 -2.4161 18 6 7.9851 -4.7083 -2.1121 19 6 8.8165 -4.7632 -3.3953 20 6 7.9708 -5.3413 -4.5487 21 6 8.9728 -6.2017 -5.3593 22 6 9.8532 -6.8351 -4.2535 23 6 10.0132 -5.7123 -3.2078 24 6 4.0461 -2.6382 0.0016 25 1 -0.4850 0.8400 -0.0004 26 1 3.2995 -0.6183 -2.0952 27 1 4.3611 0.4654 -1.1370 28 1 6.1384 -1.1602 -1.0606 29 1 5.4900 -1.4225 -2.7108 30 1 6.5211 -3.3895 -0.1686 31 1 5.5968 -4.7319 -0.8840 32 1 7.9627 -2.0963 -1.6611 33 1 8.6236 -4.4188 -1.2776 34 1 7.5538 -5.6901 -1.9163 35 1 9.1688 -3.7649 -3.6547 36 1 7.1649 -5.9620 -4.1570 37 1 7.5691 -4.5384 -5.1669 38 1 9.5729 -5.5755 -6.0194 39 1 8.4529 -6.9727 -5.9280 40 1 10.8244 -7.1221 -4.6567 41 1 9.3518 -7.6973 -3.8138 42 1 10.9462 -5.1747 -3.3769 43 1 10.0013 -6.1340 -2.2027 44 1 4.6975 -2.7927 0.8618 45 1 3.2144 -3.3419 0.0347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397655533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:14 Heat of formation + Delta-G solvation = -90.048046 kcal Electronic energy + Delta-G solvation = -21114.065311 eV Core-core repulsion = 18129.289949 eV Total energy + Delta-G solvation = -2984.775361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52104 -39.28735 -37.56710 -34.94904 -33.32377 -32.31362 -30.02327 -29.57804 -28.91420 -26.41615 -24.78745 -22.92083 -21.83185 -21.37244 -21.10417 -20.34754 -19.00900 -17.64520 -17.06158 -16.71884 -16.39623 -16.08146 -15.76539 -15.64009 -14.86399 -14.80714 -14.44083 -14.17367 -14.13265 -13.80105 -13.36386 -13.09750 -12.94243 -12.76277 -12.52135 -12.18423 -12.08992 -11.93356 -11.86350 -11.84237 -11.74860 -11.57436 -11.48416 -11.39501 -11.29277 -11.20376 -11.01386 -10.73483 -10.43877 -9.19830 -8.28428 -6.31142 1.33649 1.35245 1.45535 2.34805 3.04045 3.13249 3.54168 3.68226 3.78838 3.84108 4.00803 4.08025 4.20975 4.30862 4.33323 4.38065 4.49202 4.53448 4.60976 4.63330 4.75637 4.79548 4.81501 4.84673 4.88972 4.95947 4.98915 5.03280 5.06509 5.12350 5.17598 5.27808 5.30110 5.33204 5.37999 5.45647 5.49292 5.52303 5.63180 5.71902 6.12284 6.27361 6.37631 6.74179 6.90017 7.32877 8.88732 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.045370 B = 0.003561 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.997029 B = 7861.277218 C = 7968.763398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.009 3.991 3 Si 0.946 3.054 4 H -0.266 1.266 5 H -0.244 1.244 6 H -0.293 1.293 7 C -0.509 4.509 8 H 0.030 0.970 9 C -0.001 4.001 10 H 0.031 0.969 11 C -0.136 4.136 12 C 0.069 3.931 13 N -0.530 5.530 14 C 0.015 3.985 15 C 0.117 3.883 16 H 0.089 0.911 17 O -0.566 6.566 18 C -0.131 4.131 19 C -0.084 4.084 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.120 4.120 24 C 0.062 3.938 25 H 0.265 0.735 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.380 0.620 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.191 -10.565 -6.324 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.188 4.188 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.168 1.168 6 H -0.220 1.220 7 C -0.547 4.547 8 H 0.048 0.952 9 C -0.020 4.020 10 H 0.049 0.951 11 C -0.175 4.175 12 C -0.058 4.058 13 N -0.255 5.255 14 C -0.113 4.113 15 C 0.058 3.942 16 H 0.107 0.893 17 O -0.373 6.373 18 C -0.169 4.169 19 C -0.103 4.103 20 C -0.162 4.162 21 C -0.164 4.164 22 C -0.162 4.162 23 C -0.157 4.157 24 C -0.066 4.066 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.229 0.771 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 23.421 -10.744 -7.283 26.777 hybrid contribution 0.051 1.069 1.249 1.645 sum 23.471 -9.675 -6.034 26.094 Atomic orbital electron populations 1.70064 1.08273 1.27955 1.53164 1.25904 0.95437 1.03130 0.94282 0.85836 0.79355 0.78576 0.79182 1.19133 1.16771 1.21986 1.21353 0.91113 0.92795 1.49454 0.95170 1.19969 0.94145 0.93703 0.94181 0.95057 1.22916 0.97744 0.98006 0.98803 1.23091 0.94354 0.87194 1.01143 1.64706 1.20898 1.10611 1.29279 1.23096 0.91909 0.98229 0.98116 1.21836 0.92354 0.82910 0.97074 0.89348 1.86669 1.70050 1.33133 1.47485 1.22287 0.96850 0.99535 0.98252 1.21653 0.95072 0.99266 0.94286 1.22485 0.97973 0.98868 0.96873 1.22518 0.97432 0.98878 0.97548 1.22363 0.99922 0.97886 0.95998 1.22220 0.97628 0.96330 0.99572 1.22689 0.96450 0.97219 0.90222 0.92631 0.93493 0.92721 0.92695 0.89745 0.93756 0.89932 0.77102 0.90550 0.90530 0.91369 0.91835 0.92758 0.91675 0.91428 0.91175 0.91591 0.91716 0.91306 0.93808 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 2 C 0.01 0.53 5.46 84.65 0.46 0.99 16 3 Si 0.95 45.49 24.86 68.60 1.71 47.19 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.24 -10.74 6.40 99.48 0.64 -10.11 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.51 -29.99 8.96 25.60 0.23 -29.76 16 8 H 0.03 1.98 7.59 -2.91 -0.02 1.96 16 9 C 0.00 -0.03 2.43 -10.66 -0.03 -0.06 16 10 H 0.03 1.47 7.09 -2.39 -0.02 1.46 16 11 C -0.14 -5.86 4.94 31.80 0.16 -5.70 16 12 C 0.07 2.38 4.69 86.65 0.41 2.79 16 13 N -0.53 -18.70 5.40 -883.02 -4.76 -23.46 16 14 C 0.01 0.38 4.85 86.30 0.42 0.80 16 15 C 0.12 2.50 2.83 30.59 0.09 2.58 16 16 H 0.09 2.23 7.34 -2.39 -0.02 2.21 16 17 O -0.57 -12.28 9.29 -148.98 -1.38 -13.66 16 18 C -0.13 -2.05 4.02 30.59 0.12 -1.92 16 19 C -0.08 -1.32 2.88 -10.07 -0.03 -1.35 16 20 C -0.12 -2.12 5.42 31.69 0.17 -1.95 16 21 C -0.13 -1.82 6.91 31.91 0.22 -1.60 16 22 C -0.12 -1.58 6.83 31.67 0.22 -1.36 16 23 C -0.12 -1.57 6.46 31.32 0.20 -1.37 16 24 C 0.06 2.52 6.35 86.45 0.55 3.07 16 25 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 26 H 0.05 2.25 7.86 -2.39 -0.02 2.24 16 27 H 0.05 2.22 6.17 -2.39 -0.01 2.20 16 28 H 0.05 1.63 6.96 -2.38 -0.02 1.62 16 29 H 0.08 2.87 7.05 -2.39 -0.02 2.85 16 30 H 0.04 1.02 7.81 -2.39 -0.02 1.00 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.38 5.87 8.68 -74.05 -0.64 5.23 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.16 8.02 -2.39 -0.02 1.14 16 35 H 0.07 1.22 7.71 -2.39 -0.02 1.20 16 36 H 0.06 1.11 7.77 -2.38 -0.02 1.10 16 37 H 0.05 1.04 8.14 -2.38 -0.02 1.03 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.83 7.67 -2.38 -0.02 0.81 16 44 H 0.04 1.56 7.57 -2.39 -0.02 1.55 16 45 H 0.05 2.35 7.39 -2.39 -0.02 2.33 16 Total: -1.00 -67.83 333.28 -0.73 -68.56 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.23 Total: 17.22 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 3.19 Total: -34.84 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -4.47 Total: -84.47 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.38 Total: -13.66 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.71 Total: 47.19 kcal Total: -67.83 -0.73 -68.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397655533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.489 kcal (2) G-P(sol) polarization free energy of solvation -67.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds