Wall clock time and date at job start Mon Mar 30 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.28329 * 299.31962 * 9 7 2 11 11 C 1.54252 * 110.32707 * 61.44962 * 9 7 2 12 12 C 1.54381 * 105.06115 * 118.89819 * 11 9 7 13 13 N 1.48550 * 104.59608 * 23.85351 * 12 11 9 14 14 C 1.46904 * 111.00104 * 200.96055 * 13 12 11 15 15 C 1.52993 * 109.47004 * 290.12534 * 14 13 12 16 16 H 1.09003 * 109.47406 * 59.99874 * 15 14 13 17 17 O 1.42903 * 109.47429 * 299.99606 * 15 14 13 18 18 C 1.53008 * 109.47103 * 180.02562 * 15 14 13 19 19 C 1.52993 * 109.46913 * 185.00072 * 18 15 14 20 20 C 1.54272 * 110.03399 * 292.16421 * 19 18 15 21 21 C 1.54889 * 104.19536 * 217.11031 * 20 19 18 22 22 C 1.54884 * 102.75189 * 37.93992 * 21 20 19 23 23 C 1.53880 * 110.02888 * 175.00190 * 19 18 15 24 24 C 1.48568 * 104.22266 * 320.51863 * 13 12 11 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.09008 * 110.32538 * 237.79353 * 11 9 7 27 27 H 1.09000 * 110.32754 * 0.02562 * 11 9 7 28 28 H 1.09006 * 110.41381 * 142.63571 * 12 11 9 29 29 H 1.08998 * 110.41100 * 265.07324 * 12 11 9 30 30 H 1.09001 * 109.46731 * 50.12874 * 14 13 12 31 31 H 1.09003 * 109.47141 * 170.12246 * 14 13 12 32 32 H 0.96701 * 114.00010 * 300.00700 * 17 15 14 33 33 H 1.08997 * 109.46619 * 305.00100 * 18 15 14 34 34 H 1.08998 * 109.47000 * 64.99670 * 18 15 14 35 35 H 1.08997 * 110.02376 * 53.61080 * 19 18 15 36 36 H 1.08998 * 110.48216 * 335.78396 * 20 19 18 37 37 H 1.09000 * 110.48648 * 98.43156 * 20 19 18 38 38 H 1.09006 * 110.75774 * 279.62684 * 21 20 19 39 39 H 1.09003 * 110.91563 * 156.33023 * 21 20 19 40 40 H 1.08997 * 110.49138 * 203.38067 * 22 21 20 41 41 H 1.09001 * 110.59966 * 80.79343 * 22 21 20 42 42 H 1.09001 * 110.02951 * 238.56606 * 23 19 18 43 43 H 1.08990 * 110.03399 * 359.97438 * 23 19 18 44 44 H 1.08997 * 110.40978 * 280.70442 * 24 13 12 45 45 H 1.08994 * 110.41273 * 158.26535 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6282 -2.5759 0.8918 11 6 0.3850 -2.6178 -1.2703 12 6 0.9186 -3.8668 -2.0042 13 7 1.5555 -4.6833 -0.9391 14 6 2.5222 -5.6311 -1.5094 15 6 1.7746 -6.7168 -2.2859 16 1 1.1986 -6.2576 -3.0894 17 8 0.8910 -7.4111 -1.4031 18 6 2.7814 -7.7043 -2.8794 19 6 2.0448 -8.7173 -3.7580 20 6 1.1536 -9.6248 -2.8849 21 6 1.2599 -11.0180 -3.5533 22 6 2.7448 -11.0753 -3.9899 23 6 3.0566 -9.6397 -4.4605 24 6 2.2352 -3.6864 -0.0723 25 1 -0.4850 -0.8401 -0.0004 26 1 -0.6629 -2.7547 -1.0030 27 1 0.5051 -1.7323 -1.8945 28 1 0.0979 -4.4166 -2.4651 29 1 1.6548 -3.5808 -2.7554 30 1 3.1962 -5.1015 -2.1827 31 1 3.0981 -6.0903 -0.7059 32 1 1.3360 -7.8451 -0.6624 33 1 3.5098 -7.1622 -3.4823 34 1 3.2949 -8.2282 -2.0732 35 1 1.4372 -8.1970 -4.4984 36 1 1.5320 -9.6619 -1.8634 37 1 0.1220 -9.2730 -2.8982 38 1 0.6001 -11.0827 -4.4186 39 1 1.0364 -11.8104 -2.8389 40 1 2.8746 -11.7821 -4.8095 41 1 3.3818 -11.3476 -3.1483 42 1 2.9394 -9.5676 -5.5418 43 1 4.0722 -9.3653 -4.1758 44 1 3.1774 -3.3721 -0.5211 45 1 2.4059 -4.1003 0.9215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397655537.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:17 Heat of formation + Delta-G solvation = -80.334909 kcal Electronic energy + Delta-G solvation = -21001.560631 eV Core-core repulsion = 18017.206462 eV Total energy + Delta-G solvation = -2984.354168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.30156 -38.11511 -36.43959 -33.47467 -31.97653 -30.38389 -28.78456 -28.22486 -27.51236 -24.55384 -23.57213 -21.69463 -20.82257 -20.33419 -19.64563 -19.42692 -16.93452 -16.42321 -15.90624 -15.49131 -15.22941 -14.82810 -14.29932 -14.03922 -13.77231 -13.48793 -13.44662 -12.93367 -12.82274 -12.10752 -11.70242 -11.58816 -11.53342 -11.34864 -11.28914 -11.03351 -10.97915 -10.86054 -10.74257 -10.64995 -10.54002 -10.43810 -10.36690 -10.10729 -9.86735 -9.63577 -9.32451 -8.44978 -8.30570 -7.83963 -6.32279 -4.04612 3.43483 3.44928 3.63920 4.20388 4.47093 4.48809 4.53822 4.59897 4.74419 4.92195 5.15533 5.19453 5.28337 5.31765 5.40353 5.44011 5.51815 5.52745 5.55083 5.68210 5.71946 5.75595 5.77909 5.85498 5.90022 5.97877 5.99915 6.11683 6.15199 6.22154 6.24348 6.28531 6.35708 6.43777 6.73195 6.92747 6.98663 7.33233 7.47084 7.60500 7.71762 7.88511 8.28907 8.43874 8.90629 9.67953 11.06596 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.051797 B = 0.003275 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.441730 B = 8547.498172 C = 8715.390163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.019 3.981 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.597 4.597 8 H 0.047 0.953 9 C 0.034 3.966 10 H 0.024 0.976 11 C -0.113 4.113 12 C 0.038 3.962 13 N -0.504 5.504 14 C 0.012 3.988 15 C 0.116 3.884 16 H 0.093 0.907 17 O -0.543 6.543 18 C -0.144 4.144 19 C -0.087 4.087 20 C -0.105 4.105 21 C -0.131 4.131 22 C -0.124 4.124 23 C -0.123 4.123 24 C 0.046 3.954 25 H 0.274 0.726 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.366 0.634 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.034 0.966 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.467 -19.638 -7.612 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.185 4.185 3 Si 0.895 3.105 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.635 4.635 8 H 0.065 0.935 9 C 0.015 3.985 10 H 0.042 0.958 11 C -0.151 4.151 12 C -0.090 4.090 13 N -0.228 5.228 14 C -0.117 4.117 15 C 0.056 3.944 16 H 0.111 0.889 17 O -0.347 6.347 18 C -0.183 4.183 19 C -0.105 4.105 20 C -0.143 4.143 21 C -0.169 4.169 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.081 4.081 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.212 0.788 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.435 -18.079 -7.737 20.159 hybrid contribution 1.480 -1.362 -0.185 2.020 sum 5.914 -19.441 -7.922 21.811 Atomic orbital electron populations 1.70763 1.06797 1.31177 1.45956 1.25764 0.96583 1.02439 0.93762 0.83579 0.74917 0.75562 0.76431 1.20764 1.21606 1.21501 1.22017 0.93850 0.91490 1.56169 0.93494 1.19506 0.92907 0.92672 0.93435 0.95810 1.22498 0.98432 0.95123 0.99077 1.23089 0.97689 0.94822 0.93418 1.65373 1.26477 1.14605 1.16307 1.22966 0.94671 0.95824 0.98287 1.21860 0.90655 0.90118 0.91769 0.88920 1.86625 1.36461 1.71079 1.40492 1.22419 0.98431 0.97614 0.99793 1.21704 0.96163 0.95639 0.97030 1.22373 1.00271 0.93200 0.98421 1.22576 0.96149 0.97957 1.00172 1.22345 0.96796 0.96619 1.00444 1.22248 0.99150 0.94805 0.99853 1.23167 0.96878 0.92375 0.95657 0.91483 0.93710 0.91441 0.91791 0.95117 0.94568 0.91317 0.78766 0.91371 0.91622 0.91287 0.91641 0.91087 0.91897 0.91940 0.92194 0.91904 0.92141 0.91927 0.94739 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.45 13.27 55.43 0.74 -26.71 16 2 C 0.02 0.55 5.09 -17.82 -0.09 0.45 16 3 Si 1.07 25.19 29.90 -169.99 -5.08 20.10 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.60 -16.80 8.37 -34.44 -0.29 -17.09 16 8 H 0.05 1.31 7.58 -52.48 -0.40 0.92 16 9 C 0.03 0.87 2.65 -90.39 -0.24 0.63 16 10 H 0.02 0.66 8.04 -51.93 -0.42 0.24 16 11 C -0.11 -2.69 5.03 -25.35 -0.13 -2.81 16 12 C 0.04 0.75 5.74 -2.19 -0.01 0.74 16 13 N -0.50 -9.64 5.24 -229.97 -1.20 -10.84 16 14 C 0.01 0.18 4.47 -3.83 -0.02 0.16 16 15 C 0.12 1.47 2.96 -26.73 -0.08 1.39 16 16 H 0.09 1.30 7.26 -51.93 -0.38 0.93 16 17 O -0.54 -7.17 10.76 -35.23 -0.38 -7.55 16 18 C -0.14 -1.44 4.15 -26.73 -0.11 -1.55 16 19 C -0.09 -0.83 2.93 -89.50 -0.26 -1.09 16 20 C -0.11 -1.00 4.74 -25.07 -0.12 -1.12 16 21 C -0.13 -1.09 6.91 -24.74 -0.17 -1.26 16 22 C -0.12 -0.98 6.83 -25.08 -0.17 -1.15 16 23 C -0.12 -1.03 6.46 -25.61 -0.17 -1.20 16 24 C 0.05 1.01 6.02 -2.18 -0.01 1.00 16 25 H 0.27 8.20 6.00 -40.82 -0.25 7.95 16 26 H 0.04 1.06 7.92 -51.92 -0.41 0.65 16 27 H 0.07 1.75 7.24 -51.93 -0.38 1.38 16 28 H 0.06 1.20 7.76 -51.93 -0.40 0.79 16 29 H 0.03 0.60 7.82 -51.93 -0.41 0.20 16 30 H 0.04 0.55 7.88 -51.93 -0.41 0.14 16 31 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 32 H 0.37 3.83 8.62 45.56 0.39 4.22 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.61 8.00 -51.93 -0.42 0.19 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.61 6.85 -51.93 -0.36 0.25 16 37 H 0.07 0.77 7.89 -51.93 -0.41 0.36 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 44 H 0.03 0.76 7.56 -51.93 -0.39 0.37 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -30.16 340.19 -10.29 -40.45 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.62 Total: 2.33 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -1.87 Total: -22.90 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.47 Total: -37.56 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.38 Total: -7.55 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.10 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.16 -10.29 -40.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397655537.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.885 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds